RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 RPRD2Q5VT52 1461 aaKnown RBP7.47□□□□□ -1.21
ATXN3-239ENST00000556315 CEP152O94986 1710 aa7.47□□□□□ -1.21
ATXN3-239ENST00000556315 DCCP43146 1447 aa7.46□□□□□ -1.21
ATXN3-239ENST00000556315 VPS8Q8N3P4 1428 aa7.46□□□□□ -1.21
ATXN3-239ENST00000556315 MAGEB6P1A0A0J9YX57 407 aa7.46□□□□□ -1.22
ATXN3-239ENST00000556315 MAN1A2O60476 641 aa7.46□□□□□ -1.22
ATXN3-239ENST00000556315 ERFEQ4G0M1 354 aa7.46□□□□□ -1.22
ATXN3-239ENST00000556315 SH3D19Q5HYK7 790 aa7.46□□□□□ -1.22
ATXN3-239ENST00000556315 PDXDC2PQ6P474 469 aa7.46□□□□□ -1.22
ATXN3-239ENST00000556315 DDX17Q92841 729 aaKnown RBP7.46□□□□□ -1.22
ATXN3-239ENST00000556315 SOS2Q07890 1332 aaPredicted RBP7.46□□□□□ -1.22
ATXN3-239ENST00000556315 PNPLA6Q8IY17 1366 aa7.46□□□□□ -1.22
ATXN3-239ENST00000556315 UPP2O95045 317 aa7.45□□□□□ -1.22
ATXN3-239ENST00000556315 BMP2P12643 396 aa7.45□□□□□ -1.22
ATXN3-239ENST00000556315 SKIV2LQ15477 1246 aaKnown RBP7.45□□□□□ -1.22
ATXN3-239ENST00000556315 PPP2R2DQ66LE6 453 aa7.45□□□□□ -1.22
ATXN3-239ENST00000556315 CCDC116Q8IYX3 515 aa7.45□□□□□ -1.22
ATXN3-239ENST00000556315 PCMTD1Q96MG8 357 aaPredicted RBP7.45□□□□□ -1.22
ATXN3-239ENST00000556315 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.45□□□□□ -1.22
ATXN3-239ENST00000556315 PTPRUQ92729 1446 aa7.44□□□□□ -1.22
ATXN3-239ENST00000556315 LRRN4Q8WUT4 740 aa7.44□□□□□ -1.22
ATXN3-239ENST00000556315 TSEN34Q9BSV6 310 aaKnown RBP7.44□□□□□ -1.22
ATXN3-239ENST00000556315 GTF3C3Q9Y5Q9 886 aa7.44□□□□□ -1.22
ATXN3-239ENST00000556315 SHPRHQ149N8 1683 aa7.44□□□□□ -1.22
ATXN3-239ENST00000556315 MST1RQ04912 1400 aa7.44□□□□□ -1.22
ATXN3-239ENST00000556315 ANKRD50Q9ULJ7 1429 aa7.44□□□□□ -1.22
ATXN3-239ENST00000556315 DIP2AQ14689 1571 aa7.43□□□□□ -1.22
ATXN3-239ENST00000556315 PPFIA3O75145 1194 aa7.43□□□□□ -1.22
ATXN3-239ENST00000556315 CARD14Q9BXL6 1004 aa7.43□□□□□ -1.22
ATXN3-239ENST00000556315 FKBPLQ9UIM3 349 aa7.43□□□□□ -1.22
ATXN3-239ENST00000556315 DNMT3LQ9UJW3 386 aa7.43□□□□□ -1.22
ATXN3-239ENST00000556315 ZC3H4Q9UPT8 1303 aaKnown RBP7.43□□□□□ -1.22
ATXN3-239ENST00000556315 ASXL1Q8IXJ9 1541 aa7.42□□□□□ -1.22
ATXN3-239ENST00000556315 SRCAPQ6ZRS2 3230 aa7.42□□□□□ -1.22
ATXN3-239ENST00000556315 LOC105371045A0A1W2PR82 267 aa7.42□□□□□ -1.22
ATXN3-239ENST00000556315 FAM50AQ14320 339 aaKnown RBP7.42□□□□□ -1.22
ATXN3-239ENST00000556315 PPP1R26Q5T8A7 1209 aaPredicted RBP7.42□□□□□ -1.22
ATXN3-239ENST00000556315 Q6ZVU0 165 aa7.42□□□□□ -1.22
ATXN3-239ENST00000556315 GJD4Q96KN9 370 aaPredicted RBP7.42□□□□□ -1.22
ATXN3-239ENST00000556315 ORAI2Q96SN7 254 aa7.42□□□□□ -1.22
ATXN3-239ENST00000556315 ARHGAP9Q9BRR9 750 aa7.42□□□□□ -1.22
ATXN3-239ENST00000556315 CHD2O14647 1828 aaKnown RBP7.42□□□□□ -1.22
ATXN3-239ENST00000556315 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.41□□□□□ -1.22
ATXN3-239ENST00000556315 SF3B2Q13435 895 aaKnown RBP7.41□□□□□ -1.22
ATXN3-239ENST00000556315 ZNF326Q5BKZ1 582 aaKnown RBP7.41□□□□□ -1.22
ATXN3-239ENST00000556315 PROCA1Q8NCQ7 364 aaPredicted RBP7.41□□□□□ -1.22
ATXN3-239ENST00000556315 OCSTAMPQ9BR26 566 aa7.41□□□□□ -1.22
ATXN3-239ENST00000556315 CDV3Q9UKY7 258 aaKnown RBP7.41□□□□□ -1.22
ATXN3-239ENST00000556315 METP08581 1390 aa7.41□□□□□ -1.22
ATXN3-239ENST00000556315 ATRNO75882 1429 aa7.41□□□□□ -1.22
ATXN3-239ENST00000556315 PTCH1Q13635 1447 aa7.41□□□□□ -1.22
ATXN3-239ENST00000556315 NR6A1Q15406 480 aa7.4□□□□□ -1.22
ATXN3-239ENST00000556315 KCTD15Q96SI1 283 aaPredicted RBP7.4□□□□□ -1.22
ATXN3-239ENST00000556315 PGPEP1Q9NXJ5 209 aa7.4□□□□□ -1.22
ATXN3-239ENST00000556315 GPSM3Q9Y4H4 160 aa7.4□□□□□ -1.22
ATXN3-239ENST00000556315 TRPM2O94759 1503 aa7.4□□□□□ -1.22
ATXN3-239ENST00000556315 TMEM131LA2VDJ0 1609 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 SETBP1Q9Y6X0 1596 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 ADGRL2O95490 1459 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 C1orf167Q5SNV9 1468 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 ADGRL3Q9HAR2 1447 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 TTLL8A6PVC2 850 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 SPINT1O43278 529 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 CBLBQ13191 982 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.39□□□□□ -1.23
ATXN3-239ENST00000556315 UNC5CLQ8IV45 518 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 SLC10A4Q96EP9 437 aa7.39□□□□□ -1.23
ATXN3-239ENST00000556315 PTPN23Q9H3S7 1636 aa7.38□□□□□ -1.23
ATXN3-239ENST00000556315 NUP155O75694 1391 aa7.38□□□□□ -1.23
ATXN3-239ENST00000556315 NPHP3Q7Z494 1330 aa7.38□□□□□ -1.23
ATXN3-239ENST00000556315 ESCO1Q5FWF5 840 aa7.38□□□□□ -1.23
ATXN3-239ENST00000556315 DEFB132Q7Z7B7 95 aa7.38□□□□□ -1.23
ATXN3-239ENST00000556315 ZBTB33Q86T24 672 aa7.38□□□□□ -1.23
ATXN3-239ENST00000556315 BCL9LQ86UU0 1499 aa7.37□□□□□ -1.23
ATXN3-239ENST00000556315 BLMP54132 1417 aaPredicted RBP7.37□□□□□ -1.23
ATXN3-239ENST00000556315 PTK2Q05397 1052 aa7.37□□□□□ -1.23
ATXN3-239ENST00000556315 DHX9Q08211 1270 aaKnown RBP7.37□□□□□ -1.23
ATXN3-239ENST00000556315 INTS6LQ5JSJ4 861 aaKnown RBP7.37□□□□□ -1.23
ATXN3-239ENST00000556315 FOXO3O43524 673 aa7.36□□□□□ -1.23
ATXN3-239ENST00000556315 PTSQ03393 145 aa7.36□□□□□ -1.23
ATXN3-239ENST00000556315 ERICH6Q7L0X2 663 aa7.36□□□□□ -1.23
ATXN3-239ENST00000556315 SEPT12Q8IYM1 358 aa7.36□□□□□ -1.23
ATXN3-239ENST00000556315 LRPPRCP42704 1394 aaKnown RBP7.35□□□□□ -1.23
ATXN3-239ENST00000556315 AP1G2O75843 785 aa7.35□□□□□ -1.23
ATXN3-239ENST00000556315 GPR161Q8N6U8 529 aaKnown RBP7.35□□□□□ -1.23
ATXN3-239ENST00000556315 ADAM32Q8TC27 787 aa7.35□□□□□ -1.23
ATXN3-239ENST00000556315 EPS8L1Q8TE68 723 aa7.35□□□□□ -1.23
ATXN3-239ENST00000556315 NANOS1Q8WY41 292 aaKnown RBP7.35□□□□□ -1.23
ATXN3-239ENST00000556315 ROBO2Q9HCK4 1378 aa7.34□□□□□ -1.23
ATXN3-239ENST00000556315 FIGNL2A6NMB9 653 aa7.34□□□□□ -1.23
ATXN3-239ENST00000556315 BAG6P46379 1132 aa7.34□□□□□ -1.23
ATXN3-239ENST00000556315 KRT76Q01546 638 aa7.34□□□□□ -1.23
ATXN3-239ENST00000556315 XPCQ01831 940 aaPredicted RBP7.34□□□□□ -1.23
ATXN3-239ENST00000556315 VPS72Q15906 364 aa7.34□□□□□ -1.23
ATXN3-239ENST00000556315 KRT27Q7Z3Y8 459 aa7.34□□□□□ -1.23
ATXN3-239ENST00000556315 NHSL1Q5SYE7 1610 aa7.34□□□□□ -1.24
ATXN3-239ENST00000556315 ROCK1Q13464 1354 aa7.33□□□□□ -1.24
ATXN3-239ENST00000556315 MYOM2P54296 1465 aa7.33□□□□□ -1.24
ATXN3-239ENST00000556315 SLC35F4A4IF30 521 aa7.33□□□□□ -1.24
ATXN3-239ENST00000556315 HMX1Q9NP08 348 aaPredicted RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms