RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 KLHL34Q8N239 644 aa12.65□□□□□ -0.38
PSEN1-213ENST00000555386 MTFR1LQ9H019 292 aa12.65□□□□□ -0.38
PSEN1-213ENST00000555386 SPON1Q9HCB6 807 aa12.65□□□□□ -0.38
PSEN1-213ENST00000555386 A0A087WZG4 1122 aa12.65□□□□□ -0.38
PSEN1-213ENST00000555386 BICDL1Q6ZP65 573 aa12.65□□□□□ -0.38
PSEN1-213ENST00000555386 PPP1R1BQ9UD71 204 aaPredicted RBP12.65□□□□□ -0.38
PSEN1-213ENST00000555386 GYS1P13807 737 aa12.64□□□□□ -0.39
PSEN1-213ENST00000555386 PDIA6Q15084 440 aa12.64□□□□□ -0.39
PSEN1-213ENST00000555386 TTLL7Q6ZT98 887 aa12.64□□□□□ -0.39
PSEN1-213ENST00000555386 SLC16A10Q8TF71 515 aa12.64□□□□□ -0.39
PSEN1-213ENST00000555386 ZBTB3Q9H5J0 574 aa12.64□□□□□ -0.39
PSEN1-213ENST00000555386 USP42Q9H9J4 1324 aaKnown RBP12.63□□□□□ -0.39
PSEN1-213ENST00000555386 HOXB7P09629 217 aa12.63□□□□□ -0.39
PSEN1-213ENST00000555386 CCDC30Q5VVM6 783 aa12.63□□□□□ -0.39
PSEN1-213ENST00000555386 KIF6Q6ZMV9 814 aa12.63□□□□□ -0.39
PSEN1-213ENST00000555386 XAGE3Q8WTP9 111 aa12.63□□□□□ -0.39
PSEN1-213ENST00000555386 DDX21Q9NR30 783 aaKnown RBP eCLIP12.63□□□□□ -0.39
PSEN1-213ENST00000555386 NARFQ9UHQ1 456 aa12.63□□□□□ -0.39
PSEN1-213ENST00000555386 VAMP4O75379 141 aa12.62□□□□□ -0.39
PSEN1-213ENST00000555386 MMP10P09238 476 aa12.62□□□□□ -0.39
PSEN1-213ENST00000555386 POLD1P28340 1107 aa12.62□□□□□ -0.39
PSEN1-213ENST00000555386 COPS6Q7L5N1 327 aa12.62□□□□□ -0.39
PSEN1-213ENST00000555386 ZNF428Q96B54 188 aa12.62□□□□□ -0.39
PSEN1-213ENST00000555386 STK31Q9BXU1 1019 aa12.62□□□□□ -0.39
PSEN1-213ENST00000555386 DBF4Q9UBU7 674 aaPredicted RBP12.62□□□□□ -0.39
PSEN1-213ENST00000555386 U3KPZ7 1027 aaPredicted RBP12.62□□□□□ -0.39
PSEN1-213ENST00000555386 FAM177BA6PVY3 158 aa12.61□□□□□ -0.39
PSEN1-213ENST00000555386 CAMTA2O94983 1202 aa12.61□□□□□ -0.39
PSEN1-213ENST00000555386 PHAXQ9H814 394 aaKnown RBP12.61□□□□□ -0.39
PSEN1-213ENST00000555386 ERBB4Q15303 1308 aa12.61□□□□□ -0.39
PSEN1-213ENST00000555386 NUP98P52948 1817 aa12.61□□□□□ -0.39
PSEN1-213ENST00000555386 GOLGB1Q14789 3259 aaKnown RBP12.61□□□□□ -0.39
PSEN1-213ENST00000555386 PTGER2P43116 358 aa12.6□□□□□ -0.39
PSEN1-213ENST00000555386 HLFQ16534 295 aa12.6□□□□□ -0.39
PSEN1-213ENST00000555386 NLGN1Q8N2Q7 840 aa12.6□□□□□ -0.39
PSEN1-213ENST00000555386 BCL2L13Q9BXK5 485 aa12.6□□□□□ -0.39
PSEN1-213ENST00000555386 BCL2L12Q9HB09 334 aa12.6□□□□□ -0.39
PSEN1-213ENST00000555386 CACNA1FO60840 1977 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 TBC1D9BQ66K14 1250 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 HYPKQ9NX55 129 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 RBM19Q9Y4C8 960 aaKnown RBP12.59□□□□□ -0.39
PSEN1-213ENST00000555386 SCN7AQ01118 1682 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 BCORQ6W2J9 1755 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 NPHP1O15259 732 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 GPTP24298 496 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 G2E3Q7L622 706 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 LRP10Q7Z4F1 713 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 ZNF652Q9Y2D9 606 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 PARP3Q9Y6F1 533 aa12.59□□□□□ -0.39
PSEN1-213ENST00000555386 MAP3K15Q6ZN16 1313 aa12.58□□□□□ -0.39
PSEN1-213ENST00000555386 DDR1Q08345 913 aa12.58□□□□□ -0.4
PSEN1-213ENST00000555386 NFIXQ14938 502 aa12.58□□□□□ -0.4
PSEN1-213ENST00000555386 TRMT2AQ8IZ69 625 aaKnown RBP12.58□□□□□ -0.4
PSEN1-213ENST00000555386 CCDC24Q8N4L8 307 aa12.58□□□□□ -0.4
PSEN1-213ENST00000555386 CHMP4AQ9BY43 222 aa12.58□□□□□ -0.4
PSEN1-213ENST00000555386 NIP7Q9Y221 180 aaKnown RBP eCLIP12.58□□□□□ -0.4
PSEN1-213ENST00000555386 RIC3Q7Z5B4 369 aa12.57□□□□□ -0.4
PSEN1-213ENST00000555386 SETDB2Q96T68 719 aa12.57□□□□□ -0.4
PSEN1-213ENST00000555386 SGIP1Q9BQI5 828 aa12.57□□□□□ -0.4
PSEN1-213ENST00000555386 RCAN3Q9UKA8 241 aa12.57□□□□□ -0.4
PSEN1-213ENST00000555386 AFDNP55196 1824 aaKnown RBP12.57□□□□□ -0.4
PSEN1-213ENST00000555386 RRP1P56182 461 aaKnown RBP12.56□□□□□ -0.4
PSEN1-213ENST00000555386 FKBP5Q13451 457 aaPredicted RBP12.56□□□□□ -0.4
PSEN1-213ENST00000555386 ANKRD13DQ6ZTN6 518 aa12.56□□□□□ -0.4
PSEN1-213ENST00000555386 WWC3Q9ULE0 1092 aa12.56□□□□□ -0.4
PSEN1-213ENST00000555386 ARFGEF2Q9Y6D5 1785 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 LRP5O75197 1615 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 ATP5J2-PTCD1G3V325 749 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 POLRMTO00411 1230 aaKnown RBP12.55□□□□□ -0.4
PSEN1-213ENST00000555386 SERPINB2P05120 415 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 TM4SF1P30408 202 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 FLIIQ13045 1269 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 B4GALNT3Q6L9W6 998 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 SSH1Q8WYL5 1049 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 FHDC1Q9C0D6 1143 aaPredicted RBP12.55□□□□□ -0.4
PSEN1-213ENST00000555386 SMC4Q9NTJ3 1288 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 COL24A1Q17RW2 1714 aa12.55□□□□□ -0.4
PSEN1-213ENST00000555386 ERVV-1B6SEH8 477 aa12.54□□□□□ -0.4
PSEN1-213ENST00000555386 DDX58O95786 925 aaKnown RBP12.54□□□□□ -0.4
PSEN1-213ENST00000555386 CLEC4GQ6UXB4 293 aa12.54□□□□□ -0.4
PSEN1-213ENST00000555386 GIGYF2Q6Y7W6 1299 aaKnown RBP12.54□□□□□ -0.4
PSEN1-213ENST00000555386 PLBD2Q8NHP8 589 aa12.54□□□□□ -0.4
PSEN1-213ENST00000555386 MAP3K2Q9Y2U5 619 aa12.54□□□□□ -0.4
PSEN1-213ENST00000555386 ANKRD36CQ5JPF3 1778 aa12.54□□□□□ -0.4
PSEN1-213ENST00000555386 PI4KAP2A4QPH2 592 aa12.53□□□□□ -0.4
PSEN1-213ENST00000555386 GTF2E1P29083 439 aaPredicted RBP12.53□□□□□ -0.4
PSEN1-213ENST00000555386 NBPF5PQ86XG9 351 aaPredicted RBP12.53□□□□□ -0.4
PSEN1-213ENST00000555386 PI4KAP1Q8N8J0 262 aa12.53□□□□□ -0.4
PSEN1-213ENST00000555386 MYD88Q99836 296 aa12.53□□□□□ -0.4
PSEN1-213ENST00000555386 CARMIL3Q8ND23 1372 aa12.53□□□□□ -0.4
PSEN1-213ENST00000555386 F6X3S4 739 aa12.53□□□□□ -0.4
PSEN1-213ENST00000555386 RTL5Q5HYW3 569 aaPredicted RBP12.53□□□□□ -0.4
PSEN1-213ENST00000555386 MRPL50Q8N5N7 158 aaKnown RBP12.53□□□□□ -0.4
PSEN1-213ENST00000555386 CCDC136Q96JN2 1154 aa12.53□□□□□ -0.4
PSEN1-213ENST00000555386 UTRNP46939 3433 aa12.52□□□□□ -0.41
PSEN1-213ENST00000555386 UBN2Q6ZU65 1347 aa12.52□□□□□ -0.41
PSEN1-213ENST00000555386 TCIRG1Q13488 830 aa12.52□□□□□ -0.41
PSEN1-213ENST00000555386 SLC4A10Q6U841 1118 aa12.52□□□□□ -0.41
PSEN1-213ENST00000555386 KSR2Q6VAB6 950 aa12.52□□□□□ -0.41
PSEN1-213ENST00000555386 NUTM1Q86Y26 1132 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms