RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 DKK1O94907 266 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 SKIP12755 728 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 SMPD1P17405 629 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 BLOC1S3Q6QNY0 202 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 SLC6A16Q9GZN6 736 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 C9orf84Q5VXU9 1444 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 KDM5DQ9BY66 1539 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 ARHGEF12Q9NZN5 1544 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 CEP170Q5SW79 1584 aa3.29□□□□□ -1.88
PRPF39-207ENST00000554439 S1PR4O95977 384 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 SERPINB4P48594 390 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 NCOA4Q13772 614 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 CLP1Q92989 425 aaKnown RBP3.28□□□□□ -1.88
PRPF39-207ENST00000554439 MAP10Q9P2G4 905 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 MKRN1Q9UHC7 482 aaKnown RBP3.28□□□□□ -1.88
PRPF39-207ENST00000554439 TRPM1Q7Z4N2 1603 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 WNT7AO00755 349 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 ZNF16P17020 682 aaPredicted RBP3.28□□□□□ -1.88
PRPF39-207ENST00000554439 ARID4AP29374 1257 aaPredicted RBP3.28□□□□□ -1.88
PRPF39-207ENST00000554439 PPP2R1AP30153 589 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 WDR43Q15061 677 aaKnown RBP eCLIP3.28□□□□□ -1.889e-15■□□□□ 10.1
PRPF39-207ENST00000554439 CDC42BPAQ5VT25 1732 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 FAM43AQ8N2R8 423 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 MRRFQ96E11 262 aaKnown RBP3.28□□□□□ -1.88
PRPF39-207ENST00000554439 CEP126Q9P2H0 1117 aa3.28□□□□□ -1.88
PRPF39-207ENST00000554439 COL17A1Q9UMD9 1497 aaPredicted RBP3.28□□□□□ -1.88
PRPF39-207ENST00000554439 MAGI2Q86UL8 1455 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 ERBINQ96RT1 1412 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 ZNF521Q96K83 1311 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 APAF1O14727 1248 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 SLURP2P0DP57 97 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 CLDN10P78369 228 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 SLFN5Q08AF3 891 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 ITSN2Q9NZM3 1697 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 A2MP01023 1474 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 ACTN4O43707 911 aaKnown RBP3.27□□□□□ -1.89
PRPF39-207ENST00000554439 NR1I2O75469 434 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 TSPY4P0CV99 314 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 TSPY10P0CW01 314 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 MARSP56192 900 aaKnown RBP3.27□□□□□ -1.89
PRPF39-207ENST00000554439 KCNH2Q12809 1159 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 TSGA10IPQ3SY00 556 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 PANK1Q8TE04 598 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 THAP11Q96EK4 314 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 PLA2R1Q13018 1463 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 CCDC144AA2RUR9 1427 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 TMF1P82094 1093 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 BRICD5Q6PL45 260 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 USB1Q9BQ65 265 aaKnown RBP3.27□□□□□ -1.89
PRPF39-207ENST00000554439 PANK2Q9BZ23 570 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 TNNQ9UQP3 1299 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 KNSTRNQ9Y448 316 aa3.27□□□□□ -1.89
PRPF39-207ENST00000554439 FAM135AQ9P2D6 1515 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 ZC3H4Q9UPT8 1303 aaKnown RBP3.26□□□□□ -1.89
PRPF39-207ENST00000554439 ADCY10Q96PN6 1610 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 ERCC3P19447 782 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 RASA1P20936 1047 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 NPAS4Q8IUM7 802 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 ANKMY2Q8IV38 441 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.26□□□□□ -1.89
PRPF39-207ENST00000554439 PLPP7Q8NBV4 271 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 FAM200AQ8TCP9 573 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 SIRT1Q96EB6 747 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 PLEKHH2Q8IVE3 1493 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 PTPRGP23470 1445 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 EIF4G3O43432 1585 aaKnown RBP3.26□□□□□ -1.89
PRPF39-207ENST00000554439 PLEKHD1A6NEE1 506 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 ATP5J2-PTCD1G3V325 749 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 IRS1P35568 1242 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 ECM1Q16610 540 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 OCLNQ16625 522 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 Q3C1V9 767 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 KMT5BQ4FZB7 885 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 TRMT2AQ8IZ69 625 aaKnown RBP3.26□□□□□ -1.89
PRPF39-207ENST00000554439 C1orf216Q8TAB5 229 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 CDCA7Q9BWT1 371 aaPredicted RBP3.26□□□□□ -1.89
PRPF39-207ENST00000554439 BCL2L13Q9BXK5 485 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 KRTAP4-9Q9BYQ8 210 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 ANTXR1Q9H6X2 564 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 KIAA1024Q9UPX6 916 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 PRDM15P57071 1507 aaPredicted RBP3.26□□□□□ -1.89
PRPF39-207ENST00000554439 MYO5CQ9NQX4 1742 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 NLRP1Q9C000 1473 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 WDR7Q9Y4E6 1490 aa3.26□□□□□ -1.89
PRPF39-207ENST00000554439 GPRASP1Q5JY77 1395 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 VIRMAQ69YN4 1812 aaKnown RBP3.25□□□□□ -1.89
PRPF39-207ENST00000554439 PPEF1O14829 653 aaPredicted RBP3.25□□□□□ -1.89
PRPF39-207ENST00000554439 RNF40O75150 1001 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 XRCC6P12956 609 aaKnown RBP eCLIP3.25□□□□□ -1.89
PRPF39-207ENST00000554439 ATP2B4P23634 1241 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 DPYDQ12882 1025 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 PTPRNQ16849 979 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 SWI5Q1ZZU3 235 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 INSRP06213 1382 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 EIF3AQ14152 1382 aaKnown RBP3.25□□□□□ -1.89
PRPF39-207ENST00000554439 NKTRP30414 1462 aaKnown RBP3.25□□□□□ -1.89
PRPF39-207ENST00000554439 ZBTB7BO15156 539 aaPredicted RBP3.25□□□□□ -1.89
PRPF39-207ENST00000554439 RLBP1P12271 317 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 CANXP27824 592 aaKnown RBP3.25□□□□□ -1.89
PRPF39-207ENST00000554439 OGFOD1Q8N543 542 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms