RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 LIAT1Q6ZQX7 453 aa9.21□□□□□ -0.94
VIPAS39-205ENST00000553691 BTG4Q9NY30 223 aa9.21□□□□□ -0.94
VIPAS39-205ENST00000553691 PCDHGC3Q9UN70 934 aa9.21□□□□□ -0.94
VIPAS39-205ENST00000553691 FCF1Q9Y324 198 aaKnown RBP9.21□□□□□ -0.94
VIPAS39-205ENST00000553691 SALL2Q9Y467 1007 aaPredicted RBP9.21□□□□□ -0.94
VIPAS39-205ENST00000553691 COL14A1Q05707 1796 aaKnown RBP9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 CASZ1Q86V15 1759 aa9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 FAM83GA6ND36 823 aa9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 USB1Q9BQ65 265 aaKnown RBP9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 TBC1D2Q9BYX2 928 aa9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 GPBP1L1Q9HC44 474 aaPredicted RBP9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 V9GY48 417 aaPredicted RBP9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 ACEP12821 1306 aa9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 SBNO2Q9Y2G9 1366 aa9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 PPIP5K1Q6PFW1 1433 aa9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 PIK3C2AO00443 1686 aa9.2□□□□□ -0.94
VIPAS39-205ENST00000553691 SHANK3Q9BYB0 1731 aa9.19□□□□□ -0.94
VIPAS39-205ENST00000553691 LMO7Q8WWI1 1683 aa9.19□□□□□ -0.94
VIPAS39-205ENST00000553691 C6orf229H3BNL8 230 aa9.18□□□□□ -0.94
VIPAS39-205ENST00000553691 USP19O94966 1318 aa9.18□□□□□ -0.94
VIPAS39-205ENST00000553691 USP6P35125 1406 aa9.18□□□□□ -0.94
VIPAS39-205ENST00000553691 MSS51Q4VC12 460 aa9.18□□□□□ -0.94
VIPAS39-205ENST00000553691 MON2Q7Z3U7 1717 aa9.18□□□□□ -0.94
VIPAS39-205ENST00000553691 NGDNQ8NEJ9 315 aaKnown RBP9.18□□□□□ -0.94
VIPAS39-205ENST00000553691 CD163L1Q9NR16 1453 aa9.18□□□□□ -0.94
VIPAS39-205ENST00000553691 SLIT3O75094 1523 aa9.17□□□□□ -0.94
VIPAS39-205ENST00000553691 CPSF1Q10570 1443 aaKnown RBP9.17□□□□□ -0.94
VIPAS39-205ENST00000553691 TONSLQ96HA7 1378 aa9.17□□□□□ -0.94
VIPAS39-205ENST00000553691 PDE3BQ13370 1112 aa9.17□□□□□ -0.94
VIPAS39-205ENST00000553691 USP54Q70EL1 1684 aa9.16□□□□□ -0.94
VIPAS39-205ENST00000553691 THSD7AQ9UPZ6 1657 aa9.16□□□□□ -0.94
VIPAS39-205ENST00000553691 SPATA31A5Q5VU36 1347 aa9.16□□□□□ -0.94
VIPAS39-205ENST00000553691 SPATA31A7Q8IWB4 1347 aa9.16□□□□□ -0.94
VIPAS39-205ENST00000553691 SRPK2P78362 688 aaKnown RBP9.16□□□□□ -0.94
VIPAS39-205ENST00000553691 CSPP1Q1MSJ5 1256 aa9.16□□□□□ -0.94
VIPAS39-205ENST00000553691 COL18A1P39060 1754 aa9.16□□□□□ -0.94
VIPAS39-205ENST00000553691 GFRA3O60609 400 aa9.15□□□□□ -0.94
VIPAS39-205ENST00000553691 TPRNQ4KMQ1 711 aa9.15□□□□□ -0.94
VIPAS39-205ENST00000553691 SPRYD7Q5W111 196 aa9.15□□□□□ -0.94
VIPAS39-205ENST00000553691 CCDC24Q8N4L8 307 aa9.15□□□□□ -0.94
VIPAS39-205ENST00000553691 TESK2Q96S53 571 aa9.15□□□□□ -0.94
VIPAS39-205ENST00000553691 CABP1Q9NZU7 370 aa9.15□□□□□ -0.94
VIPAS39-205ENST00000553691 PCDHB15Q9Y5E8 787 aa9.15□□□□□ -0.94
VIPAS39-205ENST00000553691 GOLGB1Q14789 3259 aaKnown RBP9.15□□□□□ -0.94
VIPAS39-205ENST00000553691 BRD4O60885 1362 aaPredicted RBP9.14□□□□□ -0.95
VIPAS39-205ENST00000553691 CPDO75976 1380 aa9.14□□□□□ -0.95
VIPAS39-205ENST00000553691 KIAA0232Q92628 1395 aa9.14□□□□□ -0.95
VIPAS39-205ENST00000553691 EVC2Q86UK5 1308 aa9.14□□□□□ -0.95
VIPAS39-205ENST00000553691 RSBN1LQ6PCB5 846 aaPredicted RBP9.14□□□□□ -0.95
VIPAS39-205ENST00000553691 ZNF697Q5TEC3 545 aa9.13□□□□□ -0.95
VIPAS39-205ENST00000553691 NUTM2GQ5VZR2 741 aa9.13□□□□□ -0.95
VIPAS39-205ENST00000553691 RIC3Q7Z5B4 369 aa9.13□□□□□ -0.95
VIPAS39-205ENST00000553691 RETREG3Q86VR2 466 aa9.13□□□□□ -0.95
VIPAS39-205ENST00000553691 CARD11Q9BXL7 1154 aa9.13□□□□□ -0.95
VIPAS39-205ENST00000553691 KDM4CQ9H3R0 1056 aa9.13□□□□□ -0.95
VIPAS39-205ENST00000553691 PRDM11Q9NQV5 511 aa9.13□□□□□ -0.95
VIPAS39-205ENST00000553691 NFAT5O94916 1531 aa9.13□□□□□ -0.95
VIPAS39-205ENST00000553691 DXOO77932 396 aaKnown RBP9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 ZBTB7AO95365 584 aa9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 MMP16P51512 607 aa9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 GPR162Q16538 588 aa9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 SYT17Q9BSW7 474 aa9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 FHDC1Q9C0D6 1143 aaPredicted RBP9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 STRN4Q9NRL3 753 aa9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 USP35Q9P2H5 1018 aa9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 LIMD1Q9UGP4 676 aa9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 PDZRN3Q9UPQ7 1066 aa9.12□□□□□ -0.95
VIPAS39-205ENST00000553691 C11orf95C9JLR9 678 aaPredicted RBP9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 TNFRSF10AO00220 468 aa9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 JUNDP17535 347 aa9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 EVA1CP58658 441 aa9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 CHRNA2Q15822 529 aa9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 MYSM1Q5VVJ2 828 aa9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 TRIM67Q6ZTA4 783 aa9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 ZNF598Q86UK7 904 aaKnown RBP9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 ABTB2Q8N961 1025 aa9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 RGPD3A6NKT7 1758 aaPredicted RBP9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 RGPD4Q7Z3J3 1758 aa9.11□□□□□ -0.95
VIPAS39-205ENST00000553691 SPATA31A1Q5TZJ5 1347 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 TTC21BQ7Z4L5 1316 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 CLSPNQ9HAW4 1339 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 COL5A2P05997 1499 aaPredicted RBP9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 RGPD5Q99666 1765 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 SPTLC1O15269 473 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 GCP02774 474 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 ZC3H6P61129 1189 aaKnown RBP9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 FOXC1Q12948 553 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 MTMR2Q13614 643 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 DIXDC1Q155Q3 683 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 Q6ZNB5 142 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 PRR7Q8TB68 274 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 CCER1Q8TC90 406 aaPredicted RBP9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 FAM117AQ9C073 453 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 POLR3EQ9NVU0 708 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 WNK3Q9BYP7 1800 aa9.1□□□□□ -0.95
VIPAS39-205ENST00000553691 ST20-MTHFSA0A0A6YYL1 179 aa9.09□□□□□ -0.95
VIPAS39-205ENST00000553691 ZBTB24O43167 697 aaPredicted RBP9.09□□□□□ -0.95
VIPAS39-205ENST00000553691 PUS7Q96PZ0 661 aaKnown RBP9.09□□□□□ -0.95
VIPAS39-205ENST00000553691 A0A1W2PP64 1363 aa9.09□□□□□ -0.95
VIPAS39-205ENST00000553691 USP31Q70CQ4 1352 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms