RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 IFIT3O14879 490 aaKnown RBP13.37□□□□□ -0.27
SYNE2-208ENST00000553289 TRIM21P19474 475 aaKnown RBP13.37□□□□□ -0.27
SYNE2-208ENST00000553289 UBE2HP62256 183 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 NUCB1Q02818 461 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 BICDL1Q6ZP65 573 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 IFNL2Q8IZJ0 200 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 PAF1Q8N7H5 531 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 GBP2P32456 591 aaPredicted RBP13.37□□□□□ -0.27
SYNE2-208ENST00000553289 ZSCAN16Q9H4T2 348 aaPredicted RBP13.37□□□□□ -0.27
SYNE2-208ENST00000553289 POTEB2H3BUK9 544 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 USO1O60763 962 aaKnown RBP13.37□□□□□ -0.27
SYNE2-208ENST00000553289 GJB2P29033 226 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 FSIP1Q8NA03 581 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 TTC21AQ8NDW8 1320 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 CCDC194A0A1B0GVG4 234 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 CENPHQ9H3R5 247 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 CGNQ9P2M7 1197 aaKnown RBP13.37□□□□□ -0.27
SYNE2-208ENST00000553289 MAP3K2Q9Y2U5 619 aa13.37□□□□□ -0.27
SYNE2-208ENST00000553289 YEATS4O95619 227 aa13.36□□□□□ -0.27
SYNE2-208ENST00000553289 ANAPC15P60006 121 aa13.36□□□□□ -0.27
SYNE2-208ENST00000553289 CACNA2D4Q7Z3S7 1137 aa13.36□□□□□ -0.27
SYNE2-208ENST00000553289 CWC25Q9NXE8 425 aaPredicted RBP13.36□□□□□ -0.27
SYNE2-208ENST00000553289 CRACR2BQ8N4Y2 399 aaPredicted RBP13.36□□□□□ -0.27
SYNE2-208ENST00000553289 USHBP1Q8N6Y0 703 aa13.36□□□□□ -0.27
SYNE2-208ENST00000553289 DCAF8L1A6NGE4 600 aa13.36□□□□□ -0.27
SYNE2-208ENST00000553289 BAG4O95429 457 aaKnown RBP13.36□□□□□ -0.27
SYNE2-208ENST00000553289 KIF5BP33176 963 aa13.36□□□□□ -0.27
SYNE2-208ENST00000553289 NEK1Q96PY6 1258 aa13.36□□□□□ -0.27
SYNE2-208ENST00000553289 EHMT1Q9H9B1 1298 aa13.36□□□□□ -0.27
SYNE2-208ENST00000553289 FBXO3Q9UK99 471 aa13.36□□□□□ -0.27
SYNE2-208ENST00000553289 RANBP6O60518 1105 aaKnown RBP13.35□□□□□ -0.27
SYNE2-208ENST00000553289 AMPD3Q01432 767 aa13.35□□□□□ -0.27
SYNE2-208ENST00000553289 PIBF1Q8WXW3 757 aa13.35□□□□□ -0.27
SYNE2-208ENST00000553289 KIF4BQ2VIQ3 1234 aa13.35□□□□□ -0.27
SYNE2-208ENST00000553289 PUS7Q96PZ0 661 aaKnown RBP13.35□□□□□ -0.27
SYNE2-208ENST00000553289 LDHCP07864 332 aa13.35□□□□□ -0.27
SYNE2-208ENST00000553289 IARSP41252 1262 aaKnown RBP13.35□□□□□ -0.27
SYNE2-208ENST00000553289 FAM193AP78312 1265 aa13.35□□□□□ -0.27
SYNE2-208ENST00000553289 PPP1R42Q7Z4L9 355 aa13.35□□□□□ -0.27
SYNE2-208ENST00000553289 TAX1BP1Q86VP1 789 aa13.35□□□□□ -0.27
SYNE2-208ENST00000553289 KDM5BQ9UGL1 1544 aa13.35□□□□□ -0.27
SYNE2-208ENST00000553289 NLRP5P59047 1200 aa13.35□□□□□ -0.27
SYNE2-208ENST00000553289 CDC5LQ99459 802 aaKnown RBP13.35□□□□□ -0.27
SYNE2-208ENST00000553289 KLHL10Q6JEL2 608 aa13.34□□□□□ -0.27
SYNE2-208ENST00000553289 NCOA7Q8NI08 942 aa13.34□□□□□ -0.27
SYNE2-208ENST00000553289 CUL5Q93034 780 aa13.34□□□□□ -0.27
SYNE2-208ENST00000553289 UQCRFS1P1P0C7P4 283 aa13.34□□□□□ -0.27
SYNE2-208ENST00000553289 USP25Q9UHP3 1055 aa13.34□□□□□ -0.27
SYNE2-208ENST00000553289 GPATCH8Q9UKJ3 1502 aaKnown RBP13.34□□□□□ -0.27
SYNE2-208ENST00000553289 URI1O94763 535 aaPredicted RBP13.34□□□□□ -0.27
SYNE2-208ENST00000553289 ZFYP08048 801 aaPredicted RBP13.34□□□□□ -0.27
SYNE2-208ENST00000553289 PAFAH1B1P43034 410 aa13.34□□□□□ -0.27
SYNE2-208ENST00000553289 FAM114A1Q8IWE2 563 aa13.34□□□□□ -0.27
SYNE2-208ENST00000553289 PHF23Q9BUL5 403 aaPredicted RBP13.34□□□□□ -0.27
SYNE2-208ENST00000553289 DUOX2Q9NRD8 1548 aa13.34□□□□□ -0.27
SYNE2-208ENST00000553289 USP16Q9Y5T5 823 aa13.34□□□□□ -0.27
SYNE2-208ENST00000553289 ANKRD62A6NC57 917 aa13.33□□□□□ -0.27
SYNE2-208ENST00000553289 SNRPA1P09661 255 aaKnown RBP13.33□□□□□ -0.27
SYNE2-208ENST00000553289 MATR3P43243 847 aaKnown RBP eCLIP13.33□□□□□ -0.27
SYNE2-208ENST00000553289 IGHDP01880 384 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 TNNT1P13805 278 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 CCDC150Q8NCX0 1101 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 LRRC27Q9C0I9 530 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 ANKIB1Q9P2G1 1089 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 SHTN1A0MZ66 631 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 ITSN2Q9NZM3 1697 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 BMP15O95972 392 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 GUCY1B3Q02153 619 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 PPP4R3AQ6IN85 833 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 RHPN1Q8TCX5 695 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 TCP11L1Q9NUJ3 509 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 PI4KAP2A4QPH2 592 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 GOLIM4O00461 696 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 ALDH1L1O75891 902 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 CKAP2LQ8IYA6 745 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 PI4KAP1Q8N8J0 262 aa13.33□□□□□ -0.28
SYNE2-208ENST00000553289 ORC3Q9UBD5 711 aaPredicted RBP13.33□□□□□ -0.28
SYNE2-208ENST00000553289 SPTY2D1Q68D10 685 aaPredicted RBP13.32□□□□□ -0.28
SYNE2-208ENST00000553289 NUP88Q99567 741 aaPredicted RBP13.32□□□□□ -0.28
SYNE2-208ENST00000553289 POLR3AO14802 1390 aaPredicted RBP13.32□□□□□ -0.28
SYNE2-208ENST00000553289 EIF2AK4Q9P2K8 1649 aaKnown RBP13.32□□□□□ -0.28
SYNE2-208ENST00000553289 PDE4BQ07343 736 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 TMEM67Q5HYA8 995 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 CALML4Q96GE6 196 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 ACEP12821 1306 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 FOXO3O43524 673 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 FBXO31Q5XUX0 539 aaPredicted RBP13.32□□□□□ -0.28
SYNE2-208ENST00000553289 CCDC102BQ68D86 513 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 LDHAL6AQ6ZMR3 332 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 ANKRD44Q8N8A2 993 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 ZNF165P49910 485 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 CCT2P78371 535 aaKnown RBP13.32□□□□□ -0.28
SYNE2-208ENST00000553289 UGGT2Q9NYU1 1516 aa13.32□□□□□ -0.28
SYNE2-208ENST00000553289 ZSCAN22P10073 491 aaPredicted RBP13.31□□□□□ -0.28
SYNE2-208ENST00000553289 METAP2P50579 478 aaKnown RBP eCLIP13.31□□□□□ -0.28
SYNE2-208ENST00000553289 SNX21Q969T3 373 aa13.31□□□□□ -0.28
SYNE2-208ENST00000553289 CCDC178Q5BJE1 867 aa13.31□□□□□ -0.28
SYNE2-208ENST00000553289 ALS2CR12Q96Q35 445 aa13.31□□□□□ -0.28
SYNE2-208ENST00000553289 NAA15Q9BXJ9 866 aaKnown RBP13.31□□□□□ -0.28
SYNE2-208ENST00000553289 PARD3Q8TEW0 1356 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms