RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 CDK2AP1O14519 115 aa4.34□□□□□ -1.71
LIMA1-207ENST00000551486 EFSO43281 561 aa4.34□□□□□ -1.71
LIMA1-207ENST00000551486 EIF4G2P78344 907 aaKnown RBP eCLIP4.34□□□□□ -1.71
LIMA1-207ENST00000551486 TNFRSF25Q93038 417 aa4.34□□□□□ -1.71
LIMA1-207ENST00000551486 GOPCQ9HD26 462 aa4.34□□□□□ -1.71
LIMA1-207ENST00000551486 PCMTD2Q9NV79 361 aa4.34□□□□□ -1.71
LIMA1-207ENST00000551486 ALBP02768 609 aa4.33□□□□□ -1.72
LIMA1-207ENST00000551486 NID1P14543 1247 aa4.33□□□□□ -1.72
LIMA1-207ENST00000551486 ADH7P40394 386 aa4.33□□□□□ -1.72
LIMA1-207ENST00000551486 IRAK1P51617 712 aa4.33□□□□□ -1.72
LIMA1-207ENST00000551486 KRTAP5-3Q6L8H2 238 aa4.33□□□□□ -1.72
LIMA1-207ENST00000551486 GPBP1L1Q9HC44 474 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-207ENST00000551486 PRM3Q9NNZ6 103 aa4.33□□□□□ -1.72
LIMA1-207ENST00000551486 STRN4Q9NRL3 753 aa4.33□□□□□ -1.72
LIMA1-207ENST00000551486 SERTAD1Q9UHV2 236 aa4.33□□□□□ -1.72
LIMA1-207ENST00000551486 A0A0A0MRY4 1105 aa4.32□□□□□ -1.72
LIMA1-207ENST00000551486 A6NJY4 79 aa4.32□□□□□ -1.72
LIMA1-207ENST00000551486 STAU1O95793 577 aaKnown RBP4.32□□□□□ -1.72
LIMA1-207ENST00000551486 SELPP16109 830 aa4.32□□□□□ -1.72
LIMA1-207ENST00000551486 COL9A3Q14050 684 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-207ENST00000551486 C8orf86Q6ZUL3 223 aa4.32□□□□□ -1.72
LIMA1-207ENST00000551486 SLC51AQ86UW1 340 aa4.32□□□□□ -1.72
LIMA1-207ENST00000551486 MDFIQ99750 246 aa4.32□□□□□ -1.72
LIMA1-207ENST00000551486 KRTAP4-11Q9BYQ6 195 aa4.32□□□□□ -1.72
LIMA1-207ENST00000551486 HCN2Q9UL51 889 aa4.32□□□□□ -1.72
LIMA1-207ENST00000551486 STARD13Q9Y3M8 1113 aa4.32□□□□□ -1.72
LIMA1-207ENST00000551486 SOCS7O14512 581 aa4.31□□□□□ -1.72
LIMA1-207ENST00000551486 BACH1O14867 736 aa4.31□□□□□ -1.72
LIMA1-207ENST00000551486 SCNN1DP51172 638 aa4.31□□□□□ -1.72
LIMA1-207ENST00000551486 SPEM2Q0P670 501 aa4.31□□□□□ -1.72
LIMA1-207ENST00000551486 LRRC69Q6ZNQ3 347 aa4.31□□□□□ -1.72
LIMA1-207ENST00000551486 BANK1Q8NDB2 785 aa4.31□□□□□ -1.72
LIMA1-207ENST00000551486 FMNL2Q96PY5 1086 aa4.31□□□□□ -1.72
LIMA1-207ENST00000551486 SLC4A9Q96Q91 983 aa4.31□□□□□ -1.72
LIMA1-207ENST00000551486 GPC6Q9Y625 555 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-207ENST00000551486 MAP7D1Q3KQU3 841 aa4.3□□□□□ -1.72
LIMA1-207ENST00000551486 KRTAP4-5Q9BYR2 181 aa4.3□□□□□ -1.72
LIMA1-207ENST00000551486 SFSWAPQ12872 951 aaKnown RBP4.29□□□□□ -1.72
LIMA1-207ENST00000551486 MTFR1Q15390 333 aa4.29□□□□□ -1.72
LIMA1-207ENST00000551486 TSGA10IPQ3SY00 556 aa4.29□□□□□ -1.72
LIMA1-207ENST00000551486 SHISA2Q6UWI4 295 aa4.29□□□□□ -1.72
LIMA1-207ENST00000551486 C20orf204Q6ZNR8 217 aa4.29□□□□□ -1.72
LIMA1-207ENST00000551486 PHTF2Q8N3S3 785 aa4.29□□□□□ -1.72
LIMA1-207ENST00000551486 SLC30A3Q99726 388 aa4.29□□□□□ -1.72
LIMA1-207ENST00000551486 JPH1Q9HDC5 661 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-207ENST00000551486 ANKIB1Q9P2G1 1089 aa4.29□□□□□ -1.72
LIMA1-207ENST00000551486 TBC1D8BQ0IIM8 1120 aa4.28□□□□□ -1.72
LIMA1-207ENST00000551486 FZD5Q13467 585 aa4.28□□□□□ -1.72
LIMA1-207ENST00000551486 L3MBTL2Q969R5 705 aa4.28□□□□□ -1.72
LIMA1-207ENST00000551486 SSBP4Q9BWG4 385 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-207ENST00000551486 UBE2OQ9C0C9 1292 aaKnown RBP4.28□□□□□ -1.72
LIMA1-207ENST00000551486 IGFLR1Q9H665 355 aa4.28□□□□□ -1.72
LIMA1-207ENST00000551486 ZNF232Q9UNY5 417 aa4.28□□□□□ -1.72
LIMA1-207ENST00000551486 IQSEC3Q9UPP2 1182 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-207ENST00000551486 KCNH4Q9UQ05 1017 aa4.28□□□□□ -1.72
LIMA1-207ENST00000551486 RNF114Q9Y508 228 aa4.28□□□□□ -1.72
LIMA1-207ENST00000551486 PARP3Q9Y6F1 533 aa4.28□□□□□ -1.72
LIMA1-207ENST00000551486 PTCD1O75127 700 aaKnown RBP4.27□□□□□ -1.73
LIMA1-207ENST00000551486 NOS2P35228 1153 aa4.27□□□□□ -1.73
LIMA1-207ENST00000551486 TXLNAP40222 546 aa4.27□□□□□ -1.73
LIMA1-207ENST00000551486 FMR1NBQ8N0W7 255 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-207ENST00000551486 DTWD1Q8N5C7 304 aa4.27□□□□□ -1.73
LIMA1-207ENST00000551486 RHPN1Q8TCX5 695 aa4.27□□□□□ -1.73
LIMA1-207ENST00000551486 WFDC12Q8WWY7 111 aa4.27□□□□□ -1.73
LIMA1-207ENST00000551486 CEP63Q96MT8 703 aa4.27□□□□□ -1.73
LIMA1-207ENST00000551486 CHMP3Q9Y3E7 222 aa4.27□□□□□ -1.73
LIMA1-207ENST00000551486 RGS9O75916 674 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-207ENST00000551486 TAL1P17542 331 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-207ENST00000551486 SSTR4P31391 388 aa4.26□□□□□ -1.73
LIMA1-207ENST00000551486 IREB2P48200 963 aaKnown RBP4.26□□□□□ -1.73
LIMA1-207ENST00000551486 TEAD4Q15561 434 aa4.26□□□□□ -1.73
LIMA1-207ENST00000551486 DMRTC2Q8IXT2 367 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-207ENST00000551486 ZNF295-AS1Q8N0V1 137 aa4.26□□□□□ -1.73
LIMA1-207ENST00000551486 NUDT8Q8WV74 236 aa4.26□□□□□ -1.73
LIMA1-207ENST00000551486 BHMTQ93088 406 aa4.26□□□□□ -1.73
LIMA1-207ENST00000551486 EFCC1Q9HA90 598 aa4.26□□□□□ -1.73
LIMA1-207ENST00000551486 BRD7Q9NPI1 651 aa4.26□□□□□ -1.73
LIMA1-207ENST00000551486 CHIC2Q9UKJ5 165 aa4.26□□□□□ -1.73
LIMA1-207ENST00000551486 TMEM229AB2RXF0 380 aa4.25□□□□□ -1.73
LIMA1-207ENST00000551486 EML1O00423 815 aa4.25□□□□□ -1.73
LIMA1-207ENST00000551486 KCNQ4P56696 695 aa4.25□□□□□ -1.73
LIMA1-207ENST00000551486 PCSK7Q16549 785 aa4.25□□□□□ -1.73
LIMA1-207ENST00000551486 PSAPL1Q6NUJ1 521 aa4.25□□□□□ -1.73
LIMA1-207ENST00000551486 PRR23CQ6ZRP0 262 aa4.25□□□□□ -1.73
LIMA1-207ENST00000551486 RAB44Q7Z6P3 723 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-207ENST00000551486 PLPP7Q8NBV4 271 aa4.25□□□□□ -1.73
LIMA1-207ENST00000551486 SCHIP1Q9P0W5 487 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-207ENST00000551486 SLC6A14Q9UN76 642 aa4.25□□□□□ -1.73
LIMA1-207ENST00000551486 SERTM1A2A2V5 107 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 GSC2O15499 205 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 SLC24A1O60721 1099 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 FSTP19883 344 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 AFF1P51825 1210 aaKnown RBP4.24□□□□□ -1.73
LIMA1-207ENST00000551486 PSME1Q06323 249 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 IGF2-ASQ6U949 168 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 FBXO11Q86XK2 927 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 MTMR14Q8NCE2 650 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 PNMA5Q96PV4 448 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 USP3Q9Y6I4 520 aa4.24□□□□□ -1.73
LIMA1-207ENST00000551486 SFI1A8K8P3 1242 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms