RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 PDIA6Q15084 440 aa33.58■■■□□ 2.97
CPSF6-205ENST00000550075 PELP1Q8IZL8 1130 aaKnown RBP33.58■■■□□ 2.97
CPSF6-205ENST00000550075 PXDNLA1KZ92 1463 aa33.57■■■□□ 2.97
CPSF6-205ENST00000550075 GPR162Q16538 588 aa33.57■■■□□ 2.96
CPSF6-205ENST00000550075 TSR2Q969E8 191 aaKnown RBP33.57■■■□□ 2.96
CPSF6-205ENST00000550075 KIAA1551Q9HCM1 1747 aa33.56■■■□□ 2.96
CPSF6-205ENST00000550075 DBF4Q9UBU7 674 aaPredicted RBP33.56■■■□□ 2.96
CPSF6-205ENST00000550075 TTLL7Q6ZT98 887 aa33.55■■■□□ 2.96
CPSF6-205ENST00000550075 CHPF2Q9P2E5 772 aa33.55■■■□□ 2.96
CPSF6-205ENST00000550075 NUP98P52948 1817 aa33.54■■■□□ 2.96
CPSF6-205ENST00000550075 NPHP1O15259 732 aa33.54■■■□□ 2.96
CPSF6-205ENST00000550075 PROSER3Q2NL68 480 aa33.54■■■□□ 2.96
CPSF6-205ENST00000550075 N4BP2Q86UW6 1770 aaPredicted RBP33.54■■■□□ 2.96
CPSF6-205ENST00000550075 ANXA1P04083 346 aa33.53■■■□□ 2.96
CPSF6-205ENST00000550075 LRP10Q7Z4F1 713 aa33.53■■■□□ 2.96
CPSF6-205ENST00000550075 NIP7Q9Y221 180 aaKnown RBP eCLIP33.53■■■□□ 2.96
CPSF6-205ENST00000550075 ELL2O00472 640 aaPredicted RBP33.52■■■□□ 2.96
CPSF6-205ENST00000550075 MIER1Q8N108 512 aa33.52■■■□□ 2.96
CPSF6-205ENST00000550075 C8orf58Q8NAV2 365 aa33.52■■■□□ 2.96
CPSF6-205ENST00000550075 ZBTB3Q9H5J0 574 aa33.52■■■□□ 2.96
CPSF6-205ENST00000550075 ATP10DQ9P241 1426 aa33.52■■■□□ 2.96
CPSF6-205ENST00000550075 FANCIQ9NVI1 1328 aa33.52■■■□□ 2.96
CPSF6-205ENST00000550075 HLFQ16534 295 aa33.51■■■□□ 2.95
CPSF6-205ENST00000550075 CNBD1Q8NA66 436 aa33.51■■■□□ 2.95
CPSF6-205ENST00000550075 MYH16Q9H6N6 1097 aa33.51■■■□□ 2.95
CPSF6-205ENST00000550075 HYPKQ9NX55 129 aa33.51■■■□□ 2.95
CPSF6-205ENST00000550075 NBPF5PQ86XG9 351 aaPredicted RBP33.49■■■□□ 2.95
CPSF6-205ENST00000550075 XAGE3Q8WTP9 111 aa33.49■■■□□ 2.95
CPSF6-205ENST00000550075 ST5P78524 1137 aa33.48■■■□□ 2.95
CPSF6-205ENST00000550075 CCDC30Q5VVM6 783 aa33.48■■■□□ 2.95
CPSF6-205ENST00000550075 COPS6Q7L5N1 327 aa33.48■■■□□ 2.95
CPSF6-205ENST00000550075 A0A0G2JLW4 131 aa33.47■■■□□ 2.95
CPSF6-205ENST00000550075 GRIN3BO60391 1043 aa33.47■■■□□ 2.95
CPSF6-205ENST00000550075 DPEP1P16444 411 aa33.47■■■□□ 2.95
CPSF6-205ENST00000550075 GOLGA2Q08379 1002 aa33.47■■■□□ 2.95
CPSF6-205ENST00000550075 AIMP1Q12904 312 aaKnown RBP33.47■■■□□ 2.95
CPSF6-205ENST00000550075 PRR5LQ6MZQ0 368 aa33.47■■■□□ 2.95
CPSF6-205ENST00000550075 GIGYF2Q6Y7W6 1299 aaKnown RBP33.47■■■□□ 2.95
CPSF6-205ENST00000550075 TWISTNBQ3B726 338 aaPredicted RBP33.46■■■□□ 2.95
CPSF6-205ENST00000550075 BRCA1P38398 1863 aaKnown RBP33.46■■■□□ 2.95
CPSF6-205ENST00000550075 ANKRD36CQ5JPF3 1778 aa33.45■■■□□ 2.95
CPSF6-205ENST00000550075 ZNF521Q96K83 1311 aa33.45■■■□□ 2.95
CPSF6-205ENST00000550075 HSP90AB3PQ58FF7 597 aa33.44■■■□□ 2.94
CPSF6-205ENST00000550075 TSPYL6Q8N831 410 aa33.44■■■□□ 2.94
CPSF6-205ENST00000550075 PDZRN3Q9UPQ7 1066 aa33.44■■■□□ 2.94
CPSF6-205ENST00000550075 YBX3P16989 372 aaKnown RBP eCLIP33.43■■■□□ 2.94
CPSF6-205ENST00000550075 TPTE2Q6XPS3 522 aa33.43■■■□□ 2.94
CPSF6-205ENST00000550075 BRIP1Q9BX63 1249 aa33.43■■■□□ 2.94
CPSF6-205ENST00000550075 STK31Q9BXU1 1019 aa33.43■■■□□ 2.94
CPSF6-205ENST00000550075 NYXQ9GZU5 481 aa33.43■■■□□ 2.94
CPSF6-205ENST00000550075 ANKRD31Q8N7Z5 1873 aa33.43■■■□□ 2.94
CPSF6-205ENST00000550075 IBTKQ9P2D0 1353 aaPredicted RBP33.43■■■□□ 2.94
CPSF6-205ENST00000550075 DLEC1Q9Y238 1755 aa33.42■■■□□ 2.94
CPSF6-205ENST00000550075 PDE6BP35913 854 aa33.42■■■□□ 2.94
CPSF6-205ENST00000550075 PIM2Q9P1W9 311 aa33.41■■■□□ 2.94
CPSF6-205ENST00000550075 WWC3Q9ULE0 1092 aa33.41■■■□□ 2.94
CPSF6-205ENST00000550075 GPTP24298 496 aa33.4■■■□□ 2.94
CPSF6-205ENST00000550075 PARP10Q53GL7 1025 aa33.4■■■□□ 2.94
CPSF6-205ENST00000550075 H0YIN7 160 aa33.39■■■□□ 2.94
CPSF6-205ENST00000550075 GTF2E1P29083 439 aaPredicted RBP33.39■■■□□ 2.94
CPSF6-205ENST00000550075 CHRNA5P30532 468 aa33.39■■■□□ 2.94
CPSF6-205ENST00000550075 PLBD2Q8NHP8 589 aa33.39■■■□□ 2.94
CPSF6-205ENST00000550075 CHD4Q14839 1912 aa33.39■■■□□ 2.94
CPSF6-205ENST00000550075 FAM177BA6PVY3 158 aa33.38■■■□□ 2.93
CPSF6-205ENST00000550075 C2CD5Q86YS7 1000 aa33.38■■■□□ 2.93
CPSF6-205ENST00000550075 ZNF34Q8IZ26 560 aa33.38■■■□□ 2.93
CPSF6-205ENST00000550075 SPINK5Q9NQ38 1064 aaPredicted RBP33.38■■■□□ 2.93
CPSF6-205ENST00000550075 BCS1LQ9Y276 419 aa33.38■■■□□ 2.93
CPSF6-205ENST00000550075 EXOSC9Q06265 439 aaKnown RBP33.37■■■□□ 2.93
CPSF6-205ENST00000550075 ANKRD13DQ6ZTN6 518 aa33.37■■■□□ 2.93
CPSF6-205ENST00000550075 ARFGEF2Q9Y6D5 1785 aa33.37■■■□□ 2.93
CPSF6-205ENST00000550075 UBN2Q6ZU65 1347 aa33.36■■■□□ 2.93
CPSF6-205ENST00000550075 E9PSI1 815 aa33.36■■■□□ 2.93
CPSF6-205ENST00000550075 KCNA3P22001 575 aa33.36■■■□□ 2.93
CPSF6-205ENST00000550075 DALRD3Q5D0E6 543 aaKnown RBP33.36■■■□□ 2.93
CPSF6-205ENST00000550075 PPP1R42Q7Z4L9 355 aa33.36■■■□□ 2.93
CPSF6-205ENST00000550075 CCDC24Q8N4L8 307 aa33.36■■■□□ 2.93
CPSF6-205ENST00000550075 ARFGEF1Q9Y6D6 1849 aa33.36■■■□□ 2.93
CPSF6-205ENST00000550075 COL11A2P13942 1736 aaPredicted RBP33.35■■■□□ 2.93
CPSF6-205ENST00000550075 DDX58O95786 925 aaKnown RBP33.34■■■□□ 2.93
CPSF6-205ENST00000550075 CACNA1FO60840 1977 aa33.34■■■□□ 2.93
CPSF6-205ENST00000550075 TCIRG1Q13488 830 aa33.33■■■□□ 2.93
CPSF6-205ENST00000550075 RNF123Q5XPI4 1314 aa33.32■■■□□ 2.93
CPSF6-205ENST00000550075 PHAXQ9H814 394 aaKnown RBP33.32■■■□□ 2.92
CPSF6-205ENST00000550075 GOLGB1Q14789 3259 aaKnown RBP33.32■■■□□ 2.92
CPSF6-205ENST00000550075 RIC1Q4ADV7 1423 aa33.31■■■□□ 2.92
CPSF6-205ENST00000550075 RIC3Q7Z5B4 369 aa33.31■■■□□ 2.92
CPSF6-205ENST00000550075 SUSD4Q5VX71 490 aa33.3■■■□□ 2.92
CPSF6-205ENST00000550075 VAMP4O75379 141 aa33.29■■■□□ 2.92
CPSF6-205ENST00000550075 NTSR2O95665 410 aa33.29■■■□□ 2.92
CPSF6-205ENST00000550075 TTLL6Q8N841 843 aa33.29■■■□□ 2.92
CPSF6-205ENST00000550075 UTP14AQ9BVJ6 771 aaKnown RBP33.29■■■□□ 2.92
CPSF6-205ENST00000550075 NLRP10Q86W26 655 aa33.28■■■□□ 2.92
CPSF6-205ENST00000550075 NUTM1Q86Y26 1132 aa33.28■■■□□ 2.92
CPSF6-205ENST00000550075 ZNF622Q969S3 477 aaKnown RBP eCLIP33.28■■■□□ 2.921e-6■□□□□ 9.7
CPSF6-205ENST00000550075 ABCC12Q96J65 1359 aa33.28■■■□□ 2.92
CPSF6-205ENST00000550075 TCERG1O14776 1098 aaKnown RBP33.27■■■□□ 2.92
CPSF6-205ENST00000550075 YY1P25490 414 aa33.27■■■□□ 2.92
CPSF6-205ENST00000550075 SLC4A2P04920 1241 aa33.26■■■□□ 2.91
CPSF6-205ENST00000550075 ERFEQ4G0M1 354 aa33.26■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms