RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 SPATA31C2B4DYI2 1134 aa7.77□□□□□ -1.17
USP28-211ENST00000544272 GPR182O15218 404 aa7.77□□□□□ -1.17
USP28-211ENST00000544272 MZF1P28698 734 aaPredicted RBP7.77□□□□□ -1.17
USP28-211ENST00000544272 TXLNAP40222 546 aa7.77□□□□□ -1.17
USP28-211ENST00000544272 PDE3BQ13370 1112 aa7.77□□□□□ -1.17
USP28-211ENST00000544272 C4orf17Q53FE4 359 aa7.77□□□□□ -1.17
USP28-211ENST00000544272 ATCAYQ86WG3 371 aa7.77□□□□□ -1.17
USP28-211ENST00000544272 IFT43Q96FT9 208 aa7.77□□□□□ -1.17
USP28-211ENST00000544272 KLK14Q9P0G3 267 aa7.77□□□□□ -1.17
USP28-211ENST00000544272 GNASQ5JWF2 1037 aa7.76□□□□□ -1.17
USP28-211ENST00000544272 BCS1LQ9Y276 419 aa7.76□□□□□ -1.17
USP28-211ENST00000544272 PDGFAP04085 211 aa7.75□□□□□ -1.17
USP28-211ENST00000544272 GTF2E1P29083 439 aaPredicted RBP7.75□□□□□ -1.17
USP28-211ENST00000544272 ZAP70P43403 619 aa7.75□□□□□ -1.17
USP28-211ENST00000544272 PLCB3Q01970 1234 aa7.75□□□□□ -1.17
USP28-211ENST00000544272 EHHADHQ08426 723 aa7.75□□□□□ -1.17
USP28-211ENST00000544272 AAMPQ13685 434 aa7.75□□□□□ -1.17
USP28-211ENST00000544272 SLC27A3Q5K4L6 730 aa7.75□□□□□ -1.17
USP28-211ENST00000544272 LINC00528Q8N1L1 170 aa7.75□□□□□ -1.17
USP28-211ENST00000544272 INSM2Q96T92 566 aaPredicted RBP7.75□□□□□ -1.17
USP28-211ENST00000544272 ZDHHC3Q9NYG2 299 aa7.75□□□□□ -1.17
USP28-211ENST00000544272 POLIQ9UNA4 740 aa7.75□□□□□ -1.17
USP28-211ENST00000544272 GPC6Q9Y625 555 aaPredicted RBP7.75□□□□□ -1.17
USP28-211ENST00000544272 USP5P45974 858 aa7.74□□□□□ -1.17
USP28-211ENST00000544272 PLA2G4AP47712 749 aa7.74□□□□□ -1.17
USP28-211ENST00000544272 MRPL58Q14197 206 aaKnown RBP7.74□□□□□ -1.17
USP28-211ENST00000544272 EIF4G1Q04637 1599 aaKnown RBP7.74□□□□□ -1.17
USP28-211ENST00000544272 RECKO95980 971 aa7.73□□□□□ -1.17
USP28-211ENST00000544272 CTSOP43234 321 aaPredicted RBP7.73□□□□□ -1.17
USP28-211ENST00000544272 TREML1Q86YW5 311 aa7.73□□□□□ -1.17
USP28-211ENST00000544272 TMC1Q8TDI8 760 aa7.73□□□□□ -1.17
USP28-211ENST00000544272 EDEM1Q92611 657 aa7.73□□□□□ -1.17
USP28-211ENST00000544272 TGFBR3LH3BV60 316 aa7.72□□□□□ -1.17
USP28-211ENST00000544272 CAPN5O15484 640 aaPredicted RBP7.72□□□□□ -1.17
USP28-211ENST00000544272 PRPF40AO75400 957 aaKnown RBP7.72□□□□□ -1.17
USP28-211ENST00000544272 TCF3P15923 654 aa7.72□□□□□ -1.17
USP28-211ENST00000544272 FGD1P98174 961 aa7.72□□□□□ -1.17
USP28-211ENST00000544272 DNM1Q05193 864 aaKnown RBP7.72□□□□□ -1.17
USP28-211ENST00000544272 HIF1AQ16665 826 aa7.72□□□□□ -1.17
USP28-211ENST00000544272 WDR44Q5JSH3 913 aa7.72□□□□□ -1.17
USP28-211ENST00000544272 KLRG1Q96E93 195 aa7.72□□□□□ -1.17
USP28-211ENST00000544272 DMGDHQ9UI17 866 aaKnown RBP7.72□□□□□ -1.17
USP28-211ENST00000544272 MICAL2O94851 1124 aa7.71□□□□□ -1.18
USP28-211ENST00000544272 ENOX2Q16206 610 aaKnown RBP7.71□□□□□ -1.18
USP28-211ENST00000544272 NBPF1Q3BBV0 1214 aa7.71□□□□□ -1.18
USP28-211ENST00000544272 IER5Q5VY09 327 aa7.71□□□□□ -1.18
USP28-211ENST00000544272 RNF217Q8TC41 542 aa7.71□□□□□ -1.18
USP28-211ENST00000544272 RHPN1Q8TCX5 695 aa7.71□□□□□ -1.18
USP28-211ENST00000544272 POLMQ9NP87 494 aaPredicted RBP7.71□□□□□ -1.18
USP28-211ENST00000544272 LDHBP07195 334 aaKnown RBP7.7□□□□□ -1.18
USP28-211ENST00000544272 ATP4AP20648 1035 aa7.7□□□□□ -1.18
USP28-211ENST00000544272 MAPK8P45983 427 aa7.7□□□□□ -1.18
USP28-211ENST00000544272 NBPF10Q6P3W6 841 aaKnown RBP7.7□□□□□ -1.18
USP28-211ENST00000544272 SUSD3Q96L08 255 aa7.7□□□□□ -1.18
USP28-211ENST00000544272 NIF3L1Q9GZT8 377 aa7.7□□□□□ -1.18
USP28-211ENST00000544272 FAM13BQ9NYF5 915 aa7.7□□□□□ -1.18
USP28-211ENST00000544272 CUX2O14529 1486 aa7.69□□□□□ -1.18
USP28-211ENST00000544272 OPLAHO14841 1288 aa7.69□□□□□ -1.18
USP28-211ENST00000544272 UPP2O95045 317 aa7.69□□□□□ -1.18
USP28-211ENST00000544272 PHKA2P46019 1235 aa7.69□□□□□ -1.18
USP28-211ENST00000544272 POU4F2Q12837 409 aa7.69□□□□□ -1.18
USP28-211ENST00000544272 LDLRAD1Q5T700 205 aa7.69□□□□□ -1.18
USP28-211ENST00000544272 GPR152Q8TDT2 470 aa7.69□□□□□ -1.18
USP28-211ENST00000544272 NUDT16Q96DE0 195 aaKnown RBP7.69□□□□□ -1.18
USP28-211ENST00000544272 GGNBP2Q9H3C7 697 aa7.69□□□□□ -1.18
USP28-211ENST00000544272 WWC3Q9ULE0 1092 aa7.69□□□□□ -1.18
USP28-211ENST00000544272 DCAF1Q9Y4B6 1507 aa7.68□□□□□ -1.18
USP28-211ENST00000544272 AVPP01185 164 aa7.68□□□□□ -1.18
USP28-211ENST00000544272 RPLP1P05386 114 aaKnown RBP7.68□□□□□ -1.18
USP28-211ENST00000544272 TATP17735 454 aaPredicted RBP7.68□□□□□ -1.18
USP28-211ENST00000544272 MRPL14Q6P1L8 145 aaKnown RBP7.68□□□□□ -1.18
USP28-211ENST00000544272 TMC4Q7Z404 712 aa7.68□□□□□ -1.18
USP28-211ENST00000544272 ZNF280CQ8ND82 737 aa7.68□□□□□ -1.18
USP28-211ENST00000544272 AIDAQ96BJ3 306 aa7.68□□□□□ -1.18
USP28-211ENST00000544272 DUSP9Q99956 384 aaKnown RBP7.68□□□□□ -1.18
USP28-211ENST00000544272 BCL11AQ9H165 835 aa7.68□□□□□ -1.18
USP28-211ENST00000544272 PNMA6FA0A0J9YX94 578 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 IGSF3O75054 1194 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 BMP2P12643 396 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 PCSK2P16519 638 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 DAB2P98082 770 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 LYSMD3Q7Z3D4 306 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 PRICKLE2Q7Z3G6 844 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 CSRNP1Q96S65 589 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 ZIC5Q96T25 663 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 SETDB2Q96T68 719 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 CFHR5Q9BXR6 569 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 BACH2Q9BYV9 841 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 PARP2Q9UGN5 583 aa7.67□□□□□ -1.18
USP28-211ENST00000544272 A0A1B0GTH6 734 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 RGS20O76081 388 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 INPP5BP32019 993 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 IDH3AP50213 366 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 ATP2B2Q01814 1243 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 ALG1LQ6GMV1 187 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 FBF1Q8TES7 1133 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 PIK3R5Q8WYR1 880 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 HSH2DQ96JZ2 352 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 RNF19AQ9NV58 838 aa7.66□□□□□ -1.18
USP28-211ENST00000544272 ANKIB1Q9P2G1 1089 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms