RNA–Protein interactions for RNA: ENST00000543359.5

TNFRSF1A-215, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 3

Gene TNFRSF1A, Length 627 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-215ENST00000543359 PDIA6Q15084 440 aa17.23■□□□□ 0.35
TNFRSF1A-215ENST00000543359 TTLL6Q8N841 843 aa17.23■□□□□ 0.35
TNFRSF1A-215ENST00000543359 COL11A2P13942 1736 aaPredicted RBP17.23■□□□□ 0.35
TNFRSF1A-215ENST00000543359 PDE6BP35913 854 aa17.22■□□□□ 0.35
TNFRSF1A-215ENST00000543359 CCDC184Q52MB2 194 aa17.22■□□□□ 0.35
TNFRSF1A-215ENST00000543359 TTLL7Q6ZT98 887 aa17.22■□□□□ 0.35
TNFRSF1A-215ENST00000543359 CNBD1Q8NA66 436 aa17.22■□□□□ 0.35
TNFRSF1A-215ENST00000543359 PDZRN3Q9UPQ7 1066 aa17.22■□□□□ 0.35
TNFRSF1A-215ENST00000543359 ZNF652Q9Y2D9 606 aa17.22■□□□□ 0.35
TNFRSF1A-215ENST00000543359 KLRG2A4D1S0 409 aaPredicted RBP17.21■□□□□ 0.35
TNFRSF1A-215ENST00000543359 ERVV-1B6SEH8 477 aa17.21■□□□□ 0.35
TNFRSF1A-215ENST00000543359 PRELPP51888 382 aa17.21■□□□□ 0.35
TNFRSF1A-215ENST00000543359 C9orf131Q5VYM1 1079 aa17.21■□□□□ 0.35
TNFRSF1A-215ENST00000543359 NUP98P52948 1817 aa17.21■□□□□ 0.35
TNFRSF1A-215ENST00000543359 ERBB4Q15303 1308 aa17.21■□□□□ 0.34
TNFRSF1A-215ENST00000543359 NGEFQ8N5V2 710 aa17.2■□□□□ 0.34
TNFRSF1A-215ENST00000543359 GPBP1L1Q9HC44 474 aaPredicted RBP17.2■□□□□ 0.34
TNFRSF1A-215ENST00000543359 NIP7Q9Y221 180 aaKnown RBP eCLIP17.2■□□□□ 0.34
TNFRSF1A-215ENST00000543359 MAP3K15Q6ZN16 1313 aa17.2■□□□□ 0.34
TNFRSF1A-215ENST00000543359 SRGNP10124 158 aa17.19■□□□□ 0.34
TNFRSF1A-215ENST00000543359 MYL6BP14649 208 aa17.19■□□□□ 0.34
TNFRSF1A-215ENST00000543359 PROSER3Q2NL68 480 aa17.19■□□□□ 0.34
TNFRSF1A-215ENST00000543359 NBPF5PQ86XG9 351 aaPredicted RBP17.19■□□□□ 0.34
TNFRSF1A-215ENST00000543359 ZNF526Q8TF50 670 aaPredicted RBP17.19■□□□□ 0.34
TNFRSF1A-215ENST00000543359 ZNF316A6NFI3 1004 aaPredicted RBP17.18■□□□□ 0.34
TNFRSF1A-215ENST00000543359 ST5P78524 1137 aa17.18■□□□□ 0.34
TNFRSF1A-215ENST00000543359 KRT24Q2M2I5 525 aa17.18■□□□□ 0.34
TNFRSF1A-215ENST00000543359 NFKBIEO00221 500 aa17.17■□□□□ 0.34
TNFRSF1A-215ENST00000543359 APAF1O14727 1248 aa17.17■□□□□ 0.34
TNFRSF1A-215ENST00000543359 KIF3CO14782 793 aa17.17■□□□□ 0.34
TNFRSF1A-215ENST00000543359 ZNF853P0CG23 659 aa17.17■□□□□ 0.34
TNFRSF1A-215ENST00000543359 EIF2S2P20042 333 aaKnown RBP17.17■□□□□ 0.34
TNFRSF1A-215ENST00000543359 STYK1Q6J9G0 422 aa17.17■□□□□ 0.34
TNFRSF1A-215ENST00000543359 TPTE2Q6XPS3 522 aa17.17■□□□□ 0.34
TNFRSF1A-215ENST00000543359 ZNF622Q969S3 477 aaKnown RBP eCLIP17.17■□□□□ 0.34
TNFRSF1A-215ENST00000543359 SLX4Q8IY92 1834 aa17.17■□□□□ 0.34
TNFRSF1A-215ENST00000543359 ANXA1P04083 346 aa17.16■□□□□ 0.34
TNFRSF1A-215ENST00000543359 RASSF7Q02833 373 aa17.16■□□□□ 0.34
TNFRSF1A-215ENST00000543359 ZNF34Q8IZ26 560 aa17.16■□□□□ 0.34
TNFRSF1A-215ENST00000543359 CFAP44Q96MT7 982 aa17.16■□□□□ 0.34
TNFRSF1A-215ENST00000543359 KIF6Q6ZMV9 814 aa17.15■□□□□ 0.34
TNFRSF1A-215ENST00000543359 C7orf43Q8WVR3 580 aa17.15■□□□□ 0.34
TNFRSF1A-215ENST00000543359 MASTLQ96GX5 879 aa17.15■□□□□ 0.34
TNFRSF1A-215ENST00000543359 ZBTB3Q9H5J0 574 aa17.15■□□□□ 0.34
TNFRSF1A-215ENST00000543359 RNF181Q9P0P0 153 aa17.15■□□□□ 0.34
TNFRSF1A-215ENST00000543359 UBN2Q6ZU65 1347 aa17.15■□□□□ 0.34
TNFRSF1A-215ENST00000543359 FER1L6Q2WGJ9 1857 aa17.14■□□□□ 0.33
TNFRSF1A-215ENST00000543359 FAM177BA6PVY3 158 aa17.14■□□□□ 0.33
TNFRSF1A-215ENST00000543359 C21orf2O43822 256 aa17.14■□□□□ 0.33
TNFRSF1A-215ENST00000543359 GIGYF2Q6Y7W6 1299 aaKnown RBP17.14■□□□□ 0.33
TNFRSF1A-215ENST00000543359 CNKSR1Q969H4 720 aa17.14■□□□□ 0.33
TNFRSF1A-215ENST00000543359 LAS1LQ9Y4W2 734 aaKnown RBP17.14■□□□□ 0.33
TNFRSF1A-215ENST00000543359 ARFGEF2Q9Y6D5 1785 aa17.14■□□□□ 0.33
TNFRSF1A-215ENST00000543359 CCDC88AQ3V6T2 1871 aa17.14■□□□□ 0.33
TNFRSF1A-215ENST00000543359 LMNB1P20700 586 aa17.13■□□□□ 0.33
TNFRSF1A-215ENST00000543359 PRPF40BQ6NWY9 871 aaKnown RBP17.13■□□□□ 0.33
TNFRSF1A-215ENST00000543359 NECTIN2Q92692 538 aa17.13■□□□□ 0.33
TNFRSF1A-215ENST00000543359 MBIPQ9NS73 344 aa17.13■□□□□ 0.33
TNFRSF1A-215ENST00000543359 TNRC6CQ9HCJ0 1690 aaKnown RBP17.13■□□□□ 0.33
TNFRSF1A-215ENST00000543359 ABCC12Q96J65 1359 aa17.13■□□□□ 0.33
TNFRSF1A-215ENST00000543359 NPHP1O15259 732 aa17.12■□□□□ 0.33
TNFRSF1A-215ENST00000543359 HOXB7P09629 217 aa17.12■□□□□ 0.33
TNFRSF1A-215ENST00000543359 NPR1P16066 1061 aa17.12■□□□□ 0.33
TNFRSF1A-215ENST00000543359 GPTP24298 496 aa17.12■□□□□ 0.33
TNFRSF1A-215ENST00000543359 SUSD4Q5VX71 490 aa17.12■□□□□ 0.33
TNFRSF1A-215ENST00000543359 NUTM1Q86Y26 1132 aa17.12■□□□□ 0.33
TNFRSF1A-215ENST00000543359 NMRK2Q9NPI5 230 aa17.12■□□□□ 0.33
TNFRSF1A-215ENST00000543359 DDX21Q9NR30 783 aaKnown RBP eCLIP17.12■□□□□ 0.33
TNFRSF1A-215ENST00000543359 IBTKQ9P2D0 1353 aaPredicted RBP17.12■□□□□ 0.33
TNFRSF1A-215ENST00000543359 CRY2Q49AN0 593 aa17.11■□□□□ 0.33
TNFRSF1A-215ENST00000543359 ERFEQ4G0M1 354 aa17.11■□□□□ 0.33
TNFRSF1A-215ENST00000543359 COPS6Q7L5N1 327 aa17.11■□□□□ 0.33
TNFRSF1A-215ENST00000543359 NYXQ9GZU5 481 aa17.11■□□□□ 0.33
TNFRSF1A-215ENST00000543359 ZNF219Q9P2Y4 722 aaPredicted RBP17.11■□□□□ 0.33
TNFRSF1A-215ENST00000543359 CACNA1SQ13698 1873 aa17.11■□□□□ 0.33
TNFRSF1A-215ENST00000543359 NTSR2O95665 410 aa17.1■□□□□ 0.33
TNFRSF1A-215ENST00000543359 XAGE3Q8WTP9 111 aa17.1■□□□□ 0.33
TNFRSF1A-215ENST00000543359 IFT57Q9NWB7 429 aa17.1■□□□□ 0.33
TNFRSF1A-215ENST00000543359 ZC3H4Q9UPT8 1303 aaKnown RBP17.1■□□□□ 0.33
TNFRSF1A-215ENST00000543359 RIC1Q4ADV7 1423 aa17.1■□□□□ 0.33
TNFRSF1A-215ENST00000543359 DUSP27Q5VZP5 1158 aa17.09■□□□□ 0.33
TNFRSF1A-215ENST00000543359 CHPF2Q9P2E5 772 aa17.09■□□□□ 0.33
TNFRSF1A-215ENST00000543359 LTBP3Q9NS15 1303 aa17.09■□□□□ 0.33
TNFRSF1A-215ENST00000543359 DICER1Q9UPY3 1922 aaKnown RBP17.09■□□□□ 0.33
TNFRSF1A-215ENST00000543359 HOXA10P31260 410 aaPredicted RBP17.08■□□□□ 0.32
TNFRSF1A-215ENST00000543359 HDGFL1Q5TGJ6 251 aa17.08■□□□□ 0.32
TNFRSF1A-215ENST00000543359 SENP3-EIF4A1A0A087X0R7 540 aa17.07■□□□□ 0.32
TNFRSF1A-215ENST00000543359 GTF2E1P29083 439 aaPredicted RBP17.07■□□□□ 0.32
TNFRSF1A-215ENST00000543359 GNAI1P63096 354 aa17.07■□□□□ 0.32
TNFRSF1A-215ENST00000543359 AIMP1Q12904 312 aaKnown RBP17.07■□□□□ 0.32
TNFRSF1A-215ENST00000543359 SLC10A5Q5PT55 438 aa17.07■□□□□ 0.32
TNFRSF1A-215ENST00000543359 OLFM4Q6UX06 510 aa17.07■□□□□ 0.32
TNFRSF1A-215ENST00000543359 C3orf67Q6ZVT6 689 aa17.07■□□□□ 0.32
TNFRSF1A-215ENST00000543359 ANKRD36CQ5JPF3 1778 aa17.07■□□□□ 0.32
TNFRSF1A-215ENST00000543359 SNED1Q8TER0 1413 aa17.06■□□□□ 0.32
TNFRSF1A-215ENST00000543359 TOMM70O94826 608 aa17.06■□□□□ 0.32
TNFRSF1A-215ENST00000543359 ALDH1B1P30837 517 aa17.06■□□□□ 0.32
TNFRSF1A-215ENST00000543359 TCIRG1Q13488 830 aa17.06■□□□□ 0.32
TNFRSF1A-215ENST00000543359 CCDC27Q2M243 656 aa17.06■□□□□ 0.32
TNFRSF1A-215ENST00000543359 PARP10Q53GL7 1025 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms