RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 MYBBP1AQ9BQG0 1328 aaKnown RBP11.15□□□□□ -0.62
CHD4-208ENST00000540960 RRS1Q15050 365 aaKnown RBP11.15□□□□□ -0.62
CHD4-208ENST00000540960 TMC1Q8TDI8 760 aa11.15□□□□□ -0.62
CHD4-208ENST00000540960 TRPA1O75762 1119 aa11.14□□□□□ -0.63
CHD4-208ENST00000540960 BICDL1Q6ZP65 573 aa11.14□□□□□ -0.63
CHD4-208ENST00000540960 PANK3Q9H999 370 aa11.14□□□□□ -0.63
CHD4-208ENST00000540960 CELF2O95319 508 aaKnown RBP11.13□□□□□ -0.63
CHD4-208ENST00000540960 EPS15P42566 896 aa11.13□□□□□ -0.63
CHD4-208ENST00000540960 SYNE4Q8N205 404 aa11.13□□□□□ -0.63
CHD4-208ENST00000540960 SLC12A5Q9H2X9 1139 aa11.13□□□□□ -0.63
CHD4-208ENST00000540960 BCL2L12Q9HB09 334 aa11.13□□□□□ -0.63
CHD4-208ENST00000540960 ZNF277Q9NRM2 450 aaPredicted RBP11.13□□□□□ -0.63
CHD4-208ENST00000540960 RNF186Q9NXI6 227 aa11.13□□□□□ -0.63
CHD4-208ENST00000540960 INSRP06213 1382 aa11.13□□□□□ -0.63
CHD4-208ENST00000540960 AKAP11Q9UKA4 1901 aa11.13□□□□□ -0.63
CHD4-208ENST00000540960 HSP90AB2PQ58FF8 381 aa11.12□□□□□ -0.63
CHD4-208ENST00000540960 INTS5Q6P9B9 1019 aaKnown RBP11.12□□□□□ -0.63
CHD4-208ENST00000540960 HHIPL1Q96JK4 782 aa11.12□□□□□ -0.63
CHD4-208ENST00000540960 CEP290O15078 2479 aa11.12□□□□□ -0.63
CHD4-208ENST00000540960 EDC4Q6P2E9 1401 aaKnown RBP11.11□□□□□ -0.63
CHD4-208ENST00000540960 PER1O15534 1290 aaPredicted RBP11.11□□□□□ -0.63
CHD4-208ENST00000540960 ZPR1O75312 459 aa11.11□□□□□ -0.63
CHD4-208ENST00000540960 OLFM4Q6UX06 510 aa11.11□□□□□ -0.63
CHD4-208ENST00000540960 TJP1Q07157 1748 aa11.11□□□□□ -0.63
CHD4-208ENST00000540960 POTEFA5A3E0 1075 aa11.1□□□□□ -0.63
CHD4-208ENST00000540960 FZD9O00144 591 aa11.1□□□□□ -0.63
CHD4-208ENST00000540960 PTCD1O75127 700 aaKnown RBP11.1□□□□□ -0.63
CHD4-208ENST00000540960 PHKG2P15735 406 aa11.1□□□□□ -0.63
CHD4-208ENST00000540960 NOGQ13253 232 aa11.1□□□□□ -0.63
CHD4-208ENST00000540960 PRPF40BQ6NWY9 871 aaKnown RBP11.1□□□□□ -0.63
CHD4-208ENST00000540960 FAM155AB1AL88 458 aaPredicted RBP11.09□□□□□ -0.63
CHD4-208ENST00000540960 MNX1P50219 401 aaPredicted RBP11.09□□□□□ -0.63
CHD4-208ENST00000540960 GPC2Q8N158 579 aa11.09□□□□□ -0.63
CHD4-208ENST00000540960 C7orf43Q8WVR3 580 aa11.09□□□□□ -0.63
CHD4-208ENST00000540960 GLIS2Q9BZE0 524 aaPredicted RBP11.09□□□□□ -0.63
CHD4-208ENST00000540960 ZNF408Q9H9D4 720 aa11.09□□□□□ -0.63
CHD4-208ENST00000540960 SAGE1Q9NXZ1 904 aa11.09□□□□□ -0.63
CHD4-208ENST00000540960 SPG7Q9UQ90 795 aa11.09□□□□□ -0.63
CHD4-208ENST00000540960 ARFGEF2Q9Y6D5 1785 aa11.08□□□□□ -0.64
CHD4-208ENST00000540960 A0A1W2PP64 1363 aa11.08□□□□□ -0.64
CHD4-208ENST00000540960 SCNN1DP51172 638 aa11.08□□□□□ -0.64
CHD4-208ENST00000540960 KIF23Q02241 960 aaPredicted RBP11.08□□□□□ -0.64
CHD4-208ENST00000540960 AKAP4Q5JQC9 854 aa11.08□□□□□ -0.64
CHD4-208ENST00000540960 DLK2Q6UY11 383 aa11.08□□□□□ -0.64
CHD4-208ENST00000540960 HDGFL2Q7Z4V5 671 aaPredicted RBP11.08□□□□□ -0.64
CHD4-208ENST00000540960 OTUD5Q96G74 571 aa11.08□□□□□ -0.64
CHD4-208ENST00000540960 TERF2IPQ9NYB0 399 aa11.08□□□□□ -0.64
CHD4-208ENST00000540960 GJA3Q9Y6H8 435 aa11.08□□□□□ -0.64
CHD4-208ENST00000540960 PAPPA2Q9BXP8 1791 aa11.08□□□□□ -0.64
CHD4-208ENST00000540960 RTL1A6NKG5 1358 aa11.07□□□□□ -0.64
CHD4-208ENST00000540960 HNRNPUQ00839 825 aaKnown RBP eCLIP11.07□□□□□ -0.64
CHD4-208ENST00000540960 COG3Q96JB2 828 aa11.07□□□□□ -0.64
CHD4-208ENST00000540960 COL25A1Q9BXS0 654 aaPredicted RBP11.07□□□□□ -0.64
CHD4-208ENST00000540960 NARFQ9UHQ1 456 aa11.07□□□□□ -0.64
CHD4-208ENST00000540960 COL4A5P29400 1685 aa11.07□□□□□ -0.64
CHD4-208ENST00000540960 SOS1Q07889 1333 aaPredicted RBP11.07□□□□□ -0.64
CHD4-208ENST00000540960 IFNL2Q8IZJ0 200 aa11.06□□□□□ -0.64
CHD4-208ENST00000540960 BRIP1Q9BX63 1249 aa11.06□□□□□ -0.64
CHD4-208ENST00000540960 NEFLP07196 543 aa11.05□□□□□ -0.64
CHD4-208ENST00000540960 PDE6BP35913 854 aa11.05□□□□□ -0.64
CHD4-208ENST00000540960 FKBP4Q02790 459 aaKnown RBP eCLIP11.05□□□□□ -0.64
CHD4-208ENST00000540960 PKN2Q16513 984 aaKnown RBP11.05□□□□□ -0.64
CHD4-208ENST00000540960 NGEFQ8N5V2 710 aa11.05□□□□□ -0.64
CHD4-208ENST00000540960 PNISRQ8TF01 805 aaKnown RBP11.05□□□□□ -0.64
CHD4-208ENST00000540960 CNKSR1Q969H4 720 aa11.05□□□□□ -0.64
CHD4-208ENST00000540960 KIAA0100Q14667 2235 aaKnown RBP11.05□□□□□ -0.64
CHD4-208ENST00000540960 ZBED9Q6R2W3 1325 aa11.05□□□□□ -0.64
CHD4-208ENST00000540960 BCORQ6W2J9 1755 aa11.04□□□□□ -0.64
CHD4-208ENST00000540960 SRGNP10124 158 aa11.04□□□□□ -0.64
CHD4-208ENST00000540960 LMOD1P29536 600 aaPredicted RBP11.04□□□□□ -0.64
CHD4-208ENST00000540960 HUNKP57058 714 aa11.04□□□□□ -0.64
CHD4-208ENST00000540960 PRR5LQ6MZQ0 368 aa11.04□□□□□ -0.64
CHD4-208ENST00000540960 USP50Q70EL3 339 aaPredicted RBP11.04□□□□□ -0.64
CHD4-208ENST00000540960 FAM9BQ8IZU0 186 aa11.04□□□□□ -0.64
CHD4-208ENST00000540960 MPNDQ8N594 471 aa11.04□□□□□ -0.64
CHD4-208ENST00000540960 CSRNP1Q96S65 589 aa11.04□□□□□ -0.64
CHD4-208ENST00000540960 RANBP2P49792 3224 aaKnown RBP11.03□□□□□ -0.64
CHD4-208ENST00000540960 BRCA2P51587 3418 aa11.03□□□□□ -0.64
CHD4-208ENST00000540960 IARSP41252 1262 aaKnown RBP11.03□□□□□ -0.64
CHD4-208ENST00000540960 CCDC93Q567U6 631 aa11.03□□□□□ -0.64
CHD4-208ENST00000540960 AMER1Q5JTC6 1135 aaPredicted RBP11.03□□□□□ -0.64
CHD4-208ENST00000540960 STYK1Q6J9G0 422 aa11.03□□□□□ -0.64
CHD4-208ENST00000540960 DNAJC10Q8IXB1 793 aa11.03□□□□□ -0.64
CHD4-208ENST00000540960 NCAPD2Q15021 1401 aa11.02□□□□□ -0.64
CHD4-208ENST00000540960 ERVV-2B6SEH9 535 aa11.02□□□□□ -0.65
CHD4-208ENST00000540960 H0YGN5 161 aa11.02□□□□□ -0.65
CHD4-208ENST00000540960 EN2P19622 333 aaPredicted RBP11.02□□□□□ -0.65
CHD4-208ENST00000540960 CC2D1BQ5T0F9 858 aaKnown RBP11.02□□□□□ -0.65
CHD4-208ENST00000540960 SOGA3Q5TF21 947 aa11.02□□□□□ -0.65
CHD4-208ENST00000540960 TBC1D9BQ66K14 1250 aa11.02□□□□□ -0.65
CHD4-208ENST00000540960 RGMBQ6NW40 437 aa11.02□□□□□ -0.65
CHD4-208ENST00000540960 ZNF296Q8WUU4 475 aaPredicted RBP11.02□□□□□ -0.65
CHD4-208ENST00000540960 HDAC9Q9UKV0 1011 aa11.02□□□□□ -0.65
CHD4-208ENST00000540960 GTF3C3Q9Y5Q9 886 aa11.02□□□□□ -0.65
CHD4-208ENST00000540960 UNC80Q8N2C7 3258 aa11.02□□□□□ -0.65
CHD4-208ENST00000540960 COL15A1P39059 1388 aa11.02□□□□□ -0.65
CHD4-208ENST00000540960 FBXO46Q6PJ61 603 aaPredicted RBP11.01□□□□□ -0.65
CHD4-208ENST00000540960 CHRDL2Q6WN34 429 aa11.01□□□□□ -0.65
CHD4-208ENST00000540960 MASTLQ96GX5 879 aa11.01□□□□□ -0.65
CHD4-208ENST00000540960 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.01□□□□□ -0.657e-11■■■□□ 18.4
Retrieved 100 of 20,778 RNA–protein pairs in 420.5 ms