RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 ERVV-1B6SEH8 477 aa13.59□□□□□ -0.23
CDCA3-208ENST00000540683 KCNQ3O43525 872 aa13.59□□□□□ -0.23
CDCA3-208ENST00000540683 CAMTA2O94983 1202 aa13.59□□□□□ -0.23
CDCA3-208ENST00000540683 KCNA3P22001 575 aa13.59□□□□□ -0.23
CDCA3-208ENST00000540683 TBC1D9BQ66K14 1250 aa13.59□□□□□ -0.23
CDCA3-208ENST00000540683 CNKSR1Q969H4 720 aa13.59□□□□□ -0.23
CDCA3-208ENST00000540683 KDM2BQ8NHM5 1336 aa13.59□□□□□ -0.23
CDCA3-208ENST00000540683 BCORQ6W2J9 1755 aa13.58□□□□□ -0.23
CDCA3-208ENST00000540683 KDM3BQ7LBC6 1761 aa13.58□□□□□ -0.23
CDCA3-208ENST00000540683 GTF2E1P29083 439 aaPredicted RBP13.58□□□□□ -0.24
CDCA3-208ENST00000540683 TMPOP42166 694 aaKnown RBP13.58□□□□□ -0.24
CDCA3-208ENST00000540683 EIF4A1P60842 406 aaKnown RBP13.58□□□□□ -0.24
CDCA3-208ENST00000540683 PRKRIP1Q9H875 184 aaPredicted RBP13.58□□□□□ -0.24
CDCA3-208ENST00000540683 WWC3Q9ULE0 1092 aa13.58□□□□□ -0.24
CDCA3-208ENST00000540683 DLEC1Q9Y238 1755 aa13.58□□□□□ -0.24
CDCA3-208ENST00000540683 CHRNA5P30532 468 aa13.57□□□□□ -0.24
CDCA3-208ENST00000540683 STYK1Q6J9G0 422 aa13.57□□□□□ -0.24
CDCA3-208ENST00000540683 PRR5LQ6MZQ0 368 aa13.56□□□□□ -0.24
CDCA3-208ENST00000540683 C16orf71Q8IYS4 520 aaPredicted RBP13.56□□□□□ -0.24
CDCA3-208ENST00000540683 ZNF622Q969S3 477 aaKnown RBP eCLIP13.56□□□□□ -0.244e-7■□□□□ 9.1
CDCA3-208ENST00000540683 MASTLQ96GX5 879 aa13.56□□□□□ -0.24
CDCA3-208ENST00000540683 NIP7Q9Y221 180 aaKnown RBP eCLIP13.56□□□□□ -0.24
CDCA3-208ENST00000540683 HOXB7P09629 217 aa13.55□□□□□ -0.24
CDCA3-208ENST00000540683 LMNB1P20700 586 aa13.55□□□□□ -0.24
CDCA3-208ENST00000540683 C9orf131Q5VYM1 1079 aa13.55□□□□□ -0.24
CDCA3-208ENST00000540683 MIS18AQ9NYP9 233 aa13.55□□□□□ -0.24
CDCA3-208ENST00000540683 RNF181Q9P0P0 153 aa13.55□□□□□ -0.24
CDCA3-208ENST00000540683 ALDH1B1P30837 517 aa13.54□□□□□ -0.24
CDCA3-208ENST00000540683 GRIPAP1Q4V328 841 aa13.54□□□□□ -0.24
CDCA3-208ENST00000540683 HSP90AB3PQ58FF7 597 aa13.54□□□□□ -0.24
CDCA3-208ENST00000540683 MAP3K15Q6ZN16 1313 aa13.54□□□□□ -0.24
CDCA3-208ENST00000540683 IBTKQ9P2D0 1353 aaPredicted RBP13.54□□□□□ -0.24
CDCA3-208ENST00000540683 SENP3-EIF4A1A0A087X0R7 540 aa13.53□□□□□ -0.24
CDCA3-208ENST00000540683 NBPF26B4DH59 902 aa13.53□□□□□ -0.24
CDCA3-208ENST00000540683 NPR1P16066 1061 aa13.53□□□□□ -0.24
CDCA3-208ENST00000540683 PARP10Q53GL7 1025 aa13.53□□□□□ -0.24
CDCA3-208ENST00000540683 NBPF10Q6P3W6 841 aaKnown RBP13.53□□□□□ -0.24
CDCA3-208ENST00000540683 PPP1R42Q7Z4L9 355 aa13.53□□□□□ -0.24
CDCA3-208ENST00000540683 NBPF15Q8N660 670 aa13.53□□□□□ -0.24
CDCA3-208ENST00000540683 ZNF526Q8TF50 670 aaPredicted RBP13.53□□□□□ -0.24
CDCA3-208ENST00000540683 RRP7AQ9Y3A4 280 aaKnown RBP13.53□□□□□ -0.24
CDCA3-208ENST00000540683 RNF123Q5XPI4 1314 aa13.53□□□□□ -0.24
CDCA3-208ENST00000540683 PRAMEF22A3QJZ6 481 aa13.52□□□□□ -0.25
CDCA3-208ENST00000540683 SRGNP10124 158 aa13.52□□□□□ -0.25
CDCA3-208ENST00000540683 NEUROD2Q15784 382 aa13.52□□□□□ -0.25
CDCA3-208ENST00000540683 DPY19L2Q6NUT2 758 aa13.52□□□□□ -0.25
CDCA3-208ENST00000540683 TMX4Q9H1E5 349 aaPredicted RBP13.52□□□□□ -0.25
CDCA3-208ENST00000540683 ADAMTS8Q9UP79 889 aa13.52□□□□□ -0.25
CDCA3-208ENST00000540683 LTBP3Q9NS15 1303 aa13.51□□□□□ -0.25
CDCA3-208ENST00000540683 CHL1O00533 1208 aa13.51□□□□□ -0.25
CDCA3-208ENST00000540683 TOMM70O94826 608 aa13.51□□□□□ -0.25
CDCA3-208ENST00000540683 MYL6BP14649 208 aa13.51□□□□□ -0.25
CDCA3-208ENST00000540683 CFAP44Q96MT7 982 aa13.51□□□□□ -0.25
CDCA3-208ENST00000540683 THUMPD2Q9BTF0 503 aaKnown RBP13.51□□□□□ -0.25
CDCA3-208ENST00000540683 KLRG2A4D1S0 409 aaPredicted RBP13.5□□□□□ -0.25
CDCA3-208ENST00000540683 ANP32CO43423 234 aa13.5□□□□□ -0.25
CDCA3-208ENST00000540683 PIP4K2AP48426 406 aaPredicted RBP13.5□□□□□ -0.25
CDCA3-208ENST00000540683 GNAI1P63096 354 aa13.5□□□□□ -0.25
CDCA3-208ENST00000540683 CC2D2BQ6DHV5 1058 aa13.5□□□□□ -0.25
CDCA3-208ENST00000540683 CCDC146Q8IYE0 955 aa13.5□□□□□ -0.25
CDCA3-208ENST00000540683 RTKN2Q8IZC4 609 aa13.5□□□□□ -0.25
CDCA3-208ENST00000540683 NGEFQ8N5V2 710 aa13.5□□□□□ -0.25
CDCA3-208ENST00000540683 TAOK3Q9H2K8 898 aa13.5□□□□□ -0.25
CDCA3-208ENST00000540683 RIC1Q4ADV7 1423 aa13.49□□□□□ -0.25
CDCA3-208ENST00000540683 HSP90B1P14625 803 aaKnown RBP13.49□□□□□ -0.25
CDCA3-208ENST00000540683 EIF2S2P20042 333 aaKnown RBP13.49□□□□□ -0.25
CDCA3-208ENST00000540683 CCDC93Q567U6 631 aa13.49□□□□□ -0.25
CDCA3-208ENST00000540683 PRPF40BQ6NWY9 871 aaKnown RBP13.49□□□□□ -0.25
CDCA3-208ENST00000540683 GIGYF2Q6Y7W6 1299 aaKnown RBP13.49□□□□□ -0.25
CDCA3-208ENST00000540683 DBF4Q9UBU7 674 aaPredicted RBP13.49□□□□□ -0.25
CDCA3-208ENST00000540683 LAS1LQ9Y4W2 734 aaKnown RBP13.49□□□□□ -0.25
CDCA3-208ENST00000540683 ARFGEF2Q9Y6D5 1785 aa13.49□□□□□ -0.25
CDCA3-208ENST00000540683 TNRC6CQ9HCJ0 1690 aaKnown RBP13.49□□□□□ -0.25
CDCA3-208ENST00000540683 SBF1O95248 1867 aa13.48□□□□□ -0.25
CDCA3-208ENST00000540683 ANKRD31Q8N7Z5 1873 aa13.48□□□□□ -0.25
CDCA3-208ENST00000540683 NUP98P52948 1817 aa13.48□□□□□ -0.25
CDCA3-208ENST00000540683 RBM46Q8TBY0 533 aaKnown RBP13.48□□□□□ -0.25
CDCA3-208ENST00000540683 RPGRQ92834 1020 aaKnown RBP13.48□□□□□ -0.25
CDCA3-208ENST00000540683 DDX21Q9NR30 783 aaKnown RBP eCLIP13.48□□□□□ -0.25
CDCA3-208ENST00000540683 ZNF316A6NFI3 1004 aaPredicted RBP13.47□□□□□ -0.25
CDCA3-208ENST00000540683 GLTPD2A6NH11 291 aa13.47□□□□□ -0.25
CDCA3-208ENST00000540683 C21orf2O43822 256 aa13.47□□□□□ -0.25
CDCA3-208ENST00000540683 VEGFAP15692 232 aaPredicted RBP13.47□□□□□ -0.25
CDCA3-208ENST00000540683 FSTL1Q12841 308 aa13.47□□□□□ -0.25
CDCA3-208ENST00000540683 HDGFL1Q5TGJ6 251 aa13.47□□□□□ -0.25
CDCA3-208ENST00000540683 RBM17Q96I25 401 aaKnown RBP13.47□□□□□ -0.25
CDCA3-208ENST00000540683 IFT57Q9NWB7 429 aa13.47□□□□□ -0.25
CDCA3-208ENST00000540683 HYPKQ9NX55 129 aa13.47□□□□□ -0.25
CDCA3-208ENST00000540683 KIF3CO14782 793 aa13.46□□□□□ -0.25
CDCA3-208ENST00000540683 HSPA6P17066 643 aa13.46□□□□□ -0.25
CDCA3-208ENST00000540683 HLFQ16534 295 aa13.46□□□□□ -0.25
CDCA3-208ENST00000540683 ERFEQ4G0M1 354 aa13.46□□□□□ -0.25
CDCA3-208ENST00000540683 NLRP3Q96P20 1036 aa13.46□□□□□ -0.25
CDCA3-208ENST00000540683 UTP14AQ9BVJ6 771 aaKnown RBP13.46□□□□□ -0.25
CDCA3-208ENST00000540683 ZBTB3Q9H5J0 574 aa13.46□□□□□ -0.25
CDCA3-208ENST00000540683 TRIM35Q9UPQ4 493 aa13.46□□□□□ -0.25
CDCA3-208ENST00000540683 FAM177BA6PVY3 158 aa13.45□□□□□ -0.26
CDCA3-208ENST00000540683 APLP1P51693 650 aa13.45□□□□□ -0.26
CDCA3-208ENST00000540683 ZNF34Q8IZ26 560 aa13.45□□□□□ -0.26
CDCA3-208ENST00000540683 COL11A2P13942 1736 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms