RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 WWC3Q9ULE0 1092 aa15.4■□□□□ 0.06
SYNE1-238ENST00000540663 ARFGEF1Q9Y6D6 1849 aa15.4■□□□□ 0.06
SYNE1-238ENST00000540663 MAP3K15Q6ZN16 1313 aa15.4■□□□□ 0.06
SYNE1-238ENST00000540663 H0YIN7 160 aa15.39■□□□□ 0.05
SYNE1-238ENST00000540663 NPHP1O15259 732 aa15.39■□□□□ 0.05
SYNE1-238ENST00000540663 MYL6BP14649 208 aa15.39■□□□□ 0.05
SYNE1-238ENST00000540663 CHRNA5P30532 468 aa15.39■□□□□ 0.05
SYNE1-238ENST00000540663 GNAI1P63096 354 aa15.39■□□□□ 0.05
SYNE1-238ENST00000540663 ST5P78524 1137 aa15.39■□□□□ 0.05
SYNE1-238ENST00000540663 NCBP3Q53F19 620 aaKnown RBP15.39■□□□□ 0.05
SYNE1-238ENST00000540663 IFT57Q9NWB7 429 aa15.39■□□□□ 0.05
SYNE1-238ENST00000540663 DLEC1Q9Y238 1755 aa15.39■□□□□ 0.05
SYNE1-238ENST00000540663 ATP10DQ9P241 1426 aa15.38■□□□□ 0.05
SYNE1-238ENST00000540663 ZNF853P0CG23 659 aa15.38■□□□□ 0.05
SYNE1-238ENST00000540663 EIF2S2P20042 333 aaKnown RBP15.38■□□□□ 0.05
SYNE1-238ENST00000540663 NBPF5PQ86XG9 351 aaPredicted RBP15.38■□□□□ 0.05
SYNE1-238ENST00000540663 C2CD5Q86YS7 1000 aa15.38■□□□□ 0.05
SYNE1-238ENST00000540663 NIP7Q9Y221 180 aaKnown RBP eCLIP15.38■□□□□ 0.05
SYNE1-238ENST00000540663 PDIA6Q15084 440 aa15.37■□□□□ 0.05
SYNE1-238ENST00000540663 HLFQ16534 295 aa15.37■□□□□ 0.05
SYNE1-238ENST00000540663 CCDC27Q2M243 656 aa15.37■□□□□ 0.05
SYNE1-238ENST00000540663 TPTE2Q6XPS3 522 aa15.37■□□□□ 0.05
SYNE1-238ENST00000540663 NGEFQ8N5V2 710 aa15.37■□□□□ 0.05
SYNE1-238ENST00000540663 MBIPQ9NS73 344 aa15.37■□□□□ 0.05
SYNE1-238ENST00000540663 ADCY9O60503 1353 aa15.36■□□□□ 0.05
SYNE1-238ENST00000540663 ANKRD31Q8N7Z5 1873 aa15.36■□□□□ 0.05
SYNE1-238ENST00000540663 TTLL7Q6ZT98 887 aa15.36■□□□□ 0.05
SYNE1-238ENST00000540663 ARHGAP27Q6ZUM4 889 aa15.36■□□□□ 0.05
SYNE1-238ENST00000540663 LRP10Q7Z4F1 713 aa15.36■□□□□ 0.05
SYNE1-238ENST00000540663 TTLL6Q8N841 843 aa15.36■□□□□ 0.05
SYNE1-238ENST00000540663 NYXQ9GZU5 481 aa15.36■□□□□ 0.05
SYNE1-238ENST00000540663 DDX21Q9NR30 783 aaKnown RBP eCLIP15.36■□□□□ 0.05
SYNE1-238ENST00000540663 IBTKQ9P2D0 1353 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-238ENST00000540663 HDGFL1Q5TGJ6 251 aa15.35■□□□□ 0.05
SYNE1-238ENST00000540663 GIGYF2Q6Y7W6 1299 aaKnown RBP15.35■□□□□ 0.05
SYNE1-238ENST00000540663 CHMP4AQ9BY43 222 aa15.35■□□□□ 0.05
SYNE1-238ENST00000540663 NUP98P52948 1817 aa15.34■□□□□ 0.05
SYNE1-238ENST00000540663 KRT24Q2M2I5 525 aa15.34■□□□□ 0.05
SYNE1-238ENST00000540663 DUSP27Q5VZP5 1158 aa15.34■□□□□ 0.05
SYNE1-238ENST00000540663 ZBTB3Q9H5J0 574 aa15.34■□□□□ 0.05
SYNE1-238ENST00000540663 PROSER3Q2NL68 480 aa15.33■□□□□ 0.04
SYNE1-238ENST00000540663 STYK1Q6J9G0 422 aa15.33■□□□□ 0.04
SYNE1-238ENST00000540663 DBF4Q9UBU7 674 aaPredicted RBP15.33■□□□□ 0.04
SYNE1-238ENST00000540663 IL16Q14005 1332 aa15.33■□□□□ 0.04
SYNE1-238ENST00000540663 COL11A2P13942 1736 aaPredicted RBP15.32■□□□□ 0.04
SYNE1-238ENST00000540663 KLRG2A4D1S0 409 aaPredicted RBP15.32■□□□□ 0.04
SYNE1-238ENST00000540663 SRGNP10124 158 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 GTF2E1P29083 439 aaPredicted RBP15.32■□□□□ 0.04
SYNE1-238ENST00000540663 PARP10Q53GL7 1025 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 WWC1Q8IX03 1113 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 ZNF34Q8IZ26 560 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 CCDC24Q8N4L8 307 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 NECTIN2Q92692 538 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 CNKSR1Q969H4 720 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 ZNF622Q969S3 477 aaKnown RBP eCLIP15.32■□□□□ 0.04
SYNE1-238ENST00000540663 MASTLQ96GX5 879 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 CHPF2Q9P2E5 772 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 RIC1Q4ADV7 1423 aa15.32■□□□□ 0.04
SYNE1-238ENST00000540663 ANXA1P04083 346 aa15.31■□□□□ 0.04
SYNE1-238ENST00000540663 HSP90AB3PQ58FF7 597 aa15.31■□□□□ 0.04
SYNE1-238ENST00000540663 COPS6Q7L5N1 327 aa15.31■□□□□ 0.04
SYNE1-238ENST00000540663 XAGE3Q8WTP9 111 aa15.31■□□□□ 0.04
SYNE1-238ENST00000540663 HYPKQ9NX55 129 aa15.31■□□□□ 0.04
SYNE1-238ENST00000540663 NPR1P16066 1061 aa15.3■□□□□ 0.04
SYNE1-238ENST00000540663 RNF123Q5XPI4 1314 aa15.3■□□□□ 0.04
SYNE1-238ENST00000540663 UBN2Q6ZU65 1347 aa15.3■□□□□ 0.04
SYNE1-238ENST00000540663 PPP1R42Q7Z4L9 355 aa15.3■□□□□ 0.04
SYNE1-238ENST00000540663 FAM177BA6PVY3 158 aa15.29■□□□□ 0.04
SYNE1-238ENST00000540663 GPTP24298 496 aa15.29■□□□□ 0.04
SYNE1-238ENST00000540663 SOGA3Q5TF21 947 aa15.29■□□□□ 0.04
SYNE1-238ENST00000540663 ARFGEF2Q9Y6D5 1785 aa15.29■□□□□ 0.04
SYNE1-238ENST00000540663 NTSR2O95665 410 aa15.28■□□□□ 0.04
SYNE1-238ENST00000540663 AIMP1Q12904 312 aaKnown RBP15.28■□□□□ 0.04
SYNE1-238ENST00000540663 C9orf131Q5VYM1 1079 aa15.28■□□□□ 0.04
SYNE1-238ENST00000540663 WDR63Q8IWG1 891 aa15.28■□□□□ 0.04
SYNE1-238ENST00000540663 PLBD2Q8NHP8 589 aa15.28■□□□□ 0.04
SYNE1-238ENST00000540663 ABCC12Q96J65 1359 aa15.27■□□□□ 0.04
SYNE1-238ENST00000540663 ANKRD36CQ5JPF3 1778 aa15.27■□□□□ 0.04
SYNE1-238ENST00000540663 ZC3H4Q9UPT8 1303 aaKnown RBP15.27■□□□□ 0.04
SYNE1-238ENST00000540663 TCIRG1Q13488 830 aa15.27■□□□□ 0.04
SYNE1-238ENST00000540663 CRY2Q49AN0 593 aa15.27■□□□□ 0.04
SYNE1-238ENST00000540663 CCDC30Q5VVM6 783 aa15.27■□□□□ 0.04
SYNE1-238ENST00000540663 SUSD4Q5VX71 490 aa15.27■□□□□ 0.04
SYNE1-238ENST00000540663 PRPF40BQ6NWY9 871 aaKnown RBP15.27■□□□□ 0.04
SYNE1-238ENST00000540663 FAM9BQ8IZU0 186 aa15.27■□□□□ 0.04
SYNE1-238ENST00000540663 C8orf58Q8NAV2 365 aa15.27■□□□□ 0.04
SYNE1-238ENST00000540663 GPBP1L1Q9HC44 474 aaPredicted RBP15.27■□□□□ 0.04
SYNE1-238ENST00000540663 LMNB1P20700 586 aa15.26■□□□□ 0.03
SYNE1-238ENST00000540663 ERFEQ4G0M1 354 aa15.26■□□□□ 0.03
SYNE1-238ENST00000540663 ANKRD13DQ6ZTN6 518 aa15.26■□□□□ 0.03
SYNE1-238ENST00000540663 NUTM1Q86Y26 1132 aa15.26■□□□□ 0.03
SYNE1-238ENST00000540663 UTP14AQ9BVJ6 771 aaKnown RBP15.26■□□□□ 0.03
SYNE1-238ENST00000540663 RNF181Q9P0P0 153 aa15.26■□□□□ 0.03
SYNE1-238ENST00000540663 LTBP3Q9NS15 1303 aa15.25■□□□□ 0.03
SYNE1-238ENST00000540663 ELL2O00472 640 aaPredicted RBP15.25■□□□□ 0.03
SYNE1-238ENST00000540663 C21orf2O43822 256 aa15.25■□□□□ 0.03
SYNE1-238ENST00000540663 ALDH1B1P30837 517 aa15.25■□□□□ 0.03
SYNE1-238ENST00000540663 NLRP10Q86W26 655 aa15.25■□□□□ 0.03
SYNE1-238ENST00000540663 TSR2Q969E8 191 aaKnown RBP15.25■□□□□ 0.03
SYNE1-238ENST00000540663 TNRC6CQ9HCJ0 1690 aaKnown RBP15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms