RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 SETDB1Q15047 1291 aa10.06□□□□□ -0.8
YBX3-208ENST00000540447 USP48Q86UV5 1035 aa10.06□□□□□ -0.8
YBX3-208ENST00000540447 SNCBQ16143 134 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 RAB3IL1Q8TBN0 382 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 STMN4Q9H169 189 aaPredicted RBP10.05□□□□□ -0.8
YBX3-208ENST00000540447 KANK1Q14678 1352 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 SLC3A2P08195 630 aaKnown RBP10.05□□□□□ -0.8
YBX3-208ENST00000540447 UBTFL1P0CB47 393 aaPredicted RBP10.05□□□□□ -0.8
YBX3-208ENST00000540447 UBASH3AP57075 661 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 FSIP1Q8NA03 581 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 CWC25Q9NXE8 425 aaPredicted RBP10.05□□□□□ -0.8
YBX3-208ENST00000540447 FSD2A1L4K1 749 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 SMC6Q96SB8 1091 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 SURF6O75683 361 aaKnown RBP10.05□□□□□ -0.8
YBX3-208ENST00000540447 ERCC3P19447 782 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 WASHC4Q2M389 1173 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 CCDC40Q4G0X9 1142 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 SNX21Q969T3 373 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 JPH2Q9BR39 696 aaPredicted RBP10.05□□□□□ -0.8
YBX3-208ENST00000540447 TSPYL2Q9H2G4 693 aaPredicted RBP10.05□□□□□ -0.8
YBX3-208ENST00000540447 SH2B1Q9NRF2 756 aaPredicted RBP10.05□□□□□ -0.8
YBX3-208ENST00000540447 BIN1O00499 593 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 CCDC174Q6PII3 467 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 ATF7IPQ6VMQ6 1270 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 MORC4Q8TE76 937 aa10.05□□□□□ -0.8
YBX3-208ENST00000540447 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.05□□□□□ -0.8
YBX3-208ENST00000540447 A0A1W2PRG0 241 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 SART3Q15020 963 aaKnown RBP10.04□□□□□ -0.8
YBX3-208ENST00000540447 TACO1Q9BSH4 297 aaKnown RBP10.04□□□□□ -0.8
YBX3-208ENST00000540447 CCDC18Q5T9S5 1454 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 FKBP15Q5T1M5 1219 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 CABS1Q96KC9 395 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 PPP1R9BQ96SB3 815 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 RPSAP08865 295 aaKnown RBP10.04□□□□□ -0.8
YBX3-208ENST00000540447 CFAP58Q5T655 872 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 WWC2Q6AWC2 1192 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 SEC62Q99442 399 aaKnown RBP10.04□□□□□ -0.8
YBX3-208ENST00000540447 VCX3BQ9H321 246 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 HNRNPH2P55795 449 aaKnown RBP10.04□□□□□ -0.8
YBX3-208ENST00000540447 TCP11L2Q8N4U5 519 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 TCEAL9Q9UHQ7 104 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 DIAPH1O60610 1272 aaKnown RBP10.04□□□□□ -0.8
YBX3-208ENST00000540447 GNAI3P08754 354 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 TRIM68Q6AZZ1 485 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 TMEM57Q8N5G2 664 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 RNF10Q8N5U6 811 aaKnown RBP10.04□□□□□ -0.8
YBX3-208ENST00000540447 SRCIN1Q9C0H9 1055 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 SUFUQ9UMX1 484 aa10.04□□□□□ -0.8
YBX3-208ENST00000540447 MIER3Q7Z3K6 550 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 NECTIN2Q92692 538 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 NCAPGQ9BPX3 1015 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 CARD6Q9BX69 1037 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 SPTY2D1Q68D10 685 aaPredicted RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 SMC5Q8IY18 1101 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 GTF2E1P29083 439 aaPredicted RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 ZBTB16Q05516 673 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 CCDC92Q53HC0 331 aaPredicted RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 CCDC30Q5VVM6 783 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 SPATS2Q86XZ4 545 aaKnown RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 DNAJC25Q9H1X3 360 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 A0A087WUV0 522 aaPredicted RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 MYCNP04198 464 aaPredicted RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 ZNF445P59923 1031 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 INTS8Q75QN2 995 aaKnown RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 CACNA2D4Q7Z3S7 1137 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 TFIP11Q9UBB9 837 aaKnown RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 CASQ2O14958 399 aaPredicted RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 CEP104O60308 925 aa10.03□□□□□ -0.8
YBX3-208ENST00000540447 CCDC43Q96MW1 224 aaKnown RBP10.03□□□□□ -0.8
YBX3-208ENST00000540447 TYRO3Q06418 890 aa10.02□□□□□ -0.8
YBX3-208ENST00000540447 TRIM6Q9C030 488 aaPredicted RBP10.02□□□□□ -0.8
YBX3-208ENST00000540447 LIMCH1Q9UPQ0 1083 aa10.02□□□□□ -0.8
YBX3-208ENST00000540447 MAP4K4O95819 1239 aaPredicted RBP10.02□□□□□ -0.81
YBX3-208ENST00000540447 NPM1P06748 294 aaKnown RBP eCLIP10.02□□□□□ -0.81
YBX3-208ENST00000540447 VAV2P52735 878 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 MMS22LQ6ZRQ5 1243 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 RAB11FIP4Q86YS3 637 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 SH3GL3Q99963 347 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 CNPY2Q9Y2B0 182 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 RB1CC1Q8TDY2 1594 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 RANBP1P43487 201 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 KARSQ15046 597 aaKnown RBP10.02□□□□□ -0.81
YBX3-208ENST00000540447 KRT18P05783 430 aaKnown RBP10.02□□□□□ -0.81
YBX3-208ENST00000540447 EIF2S2P20042 333 aaKnown RBP10.02□□□□□ -0.81
YBX3-208ENST00000540447 RASIP1Q5U651 963 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 USH1CQ9Y6N9 552 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 SATB1Q01826 763 aa10.02□□□□□ -0.81
YBX3-208ENST00000540447 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.02□□□□□ -0.81
YBX3-208ENST00000540447 MYO1CO00159 1063 aa10.01□□□□□ -0.81
YBX3-208ENST00000540447 ZNF569Q5MCW4 686 aa10.01□□□□□ -0.81
YBX3-208ENST00000540447 SIL1Q9H173 461 aa10.01□□□□□ -0.81
YBX3-208ENST00000540447 ZSCAN22P10073 491 aaPredicted RBP10.01□□□□□ -0.81
YBX3-208ENST00000540447 TDRD12Q587J7 1177 aaKnown RBP10.01□□□□□ -0.81
YBX3-208ENST00000540447 AMOTL1Q8IY63 956 aa10.01□□□□□ -0.81
YBX3-208ENST00000540447 AOPEPQ8N6M6 819 aa10.01□□□□□ -0.81
YBX3-208ENST00000540447 ABTB1Q969K4 478 aaPredicted RBP10.01□□□□□ -0.81
YBX3-208ENST00000540447 SAAL1Q96ER3 474 aa10.01□□□□□ -0.81
YBX3-208ENST00000540447 VCX3AQ9NNX9 186 aa10.01□□□□□ -0.81
YBX3-208ENST00000540447 DHX29Q7Z478 1369 aaKnown RBP10.01□□□□□ -0.81
YBX3-208ENST00000540447 VIMP08670 466 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms