RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 DPEP1P16444 411 aa13.96□□□□□ -0.17
HMGA2-209ENST00000539662 KCNA3P22001 575 aa13.96□□□□□ -0.17
HMGA2-209ENST00000539662 CHRNA5P30532 468 aa13.96□□□□□ -0.17
HMGA2-209ENST00000539662 GNAI1P63096 354 aa13.96□□□□□ -0.17
HMGA2-209ENST00000539662 GPR162Q16538 588 aa13.96□□□□□ -0.17
HMGA2-209ENST00000539662 MIER1Q8N108 512 aa13.96□□□□□ -0.17
HMGA2-209ENST00000539662 TSPYL6Q8N831 410 aa13.96□□□□□ -0.17
HMGA2-209ENST00000539662 BRCA1P38398 1863 aaKnown RBP13.95□□□□□ -0.18
HMGA2-209ENST00000539662 DIEXFQ68CQ4 756 aaKnown RBP13.95□□□□□ -0.18
HMGA2-209ENST00000539662 ZBTB3Q9H5J0 574 aa13.95□□□□□ -0.18
HMGA2-209ENST00000539662 CHPF2Q9P2E5 772 aa13.95□□□□□ -0.18
HMGA2-209ENST00000539662 NPM2Q86SE8 214 aaKnown RBP13.94□□□□□ -0.18
HMGA2-209ENST00000539662 FAM177BA6PVY3 158 aa13.93□□□□□ -0.18
HMGA2-209ENST00000539662 AIMP1Q12904 312 aaKnown RBP13.93□□□□□ -0.18
HMGA2-209ENST00000539662 HDGFL1Q5TGJ6 251 aa13.93□□□□□ -0.18
HMGA2-209ENST00000539662 PRR5LQ6MZQ0 368 aa13.93□□□□□ -0.18
HMGA2-209ENST00000539662 XAGE3Q8WTP9 111 aa13.93□□□□□ -0.18
HMGA2-209ENST00000539662 ERBB4Q15303 1308 aa13.92□□□□□ -0.18
HMGA2-209ENST00000539662 MAP3K15Q6ZN16 1313 aa13.92□□□□□ -0.18
HMGA2-209ENST00000539662 CCER2I3L3R5 266 aa13.92□□□□□ -0.18
HMGA2-209ENST00000539662 TCERG1O14776 1098 aaKnown RBP13.92□□□□□ -0.18
HMGA2-209ENST00000539662 TGFB2P61812 414 aa13.92□□□□□ -0.18
HMGA2-209ENST00000539662 CALD1Q05682 793 aaKnown RBP13.92□□□□□ -0.18
HMGA2-209ENST00000539662 COPS6Q7L5N1 327 aa13.92□□□□□ -0.18
HMGA2-209ENST00000539662 ZNF428Q96B54 188 aa13.92□□□□□ -0.18
HMGA2-209ENST00000539662 SETDB2Q96T68 719 aa13.92□□□□□ -0.18
HMGA2-209ENST00000539662 COL11A2P13942 1736 aaPredicted RBP13.92□□□□□ -0.18
HMGA2-209ENST00000539662 GPTP24298 496 aa13.91□□□□□ -0.18
HMGA2-209ENST00000539662 CLEC4GQ6UXB4 293 aa13.91□□□□□ -0.18
HMGA2-209ENST00000539662 DDX21Q9NR30 783 aaKnown RBP eCLIP13.91□□□□□ -0.18
HMGA2-209ENST00000539662 NIP7Q9Y221 180 aaKnown RBP eCLIP13.91□□□□□ -0.18
HMGA2-209ENST00000539662 UBN2Q6ZU65 1347 aa13.9□□□□□ -0.18
HMGA2-209ENST00000539662 ZNF521Q96K83 1311 aa13.9□□□□□ -0.18
HMGA2-209ENST00000539662 FANCIQ9NVI1 1328 aa13.9□□□□□ -0.18
HMGA2-209ENST00000539662 HOXB7P09629 217 aa13.9□□□□□ -0.18
HMGA2-209ENST00000539662 NCBP3Q53F19 620 aaKnown RBP13.9□□□□□ -0.18
HMGA2-209ENST00000539662 KIF6Q6ZMV9 814 aa13.9□□□□□ -0.18
HMGA2-209ENST00000539662 PHAXQ9H814 394 aaKnown RBP13.9□□□□□ -0.18
HMGA2-209ENST00000539662 DLEC1Q9Y238 1755 aa13.9□□□□□ -0.18
HMGA2-209ENST00000539662 IL16Q14005 1332 aa13.9□□□□□ -0.19
HMGA2-209ENST00000539662 TNRC6CQ9HCJ0 1690 aaKnown RBP13.89□□□□□ -0.19
HMGA2-209ENST00000539662 DCAF8L1A6NGE4 600 aa13.89□□□□□ -0.19
HMGA2-209ENST00000539662 ERVV-1B6SEH8 477 aa13.89□□□□□ -0.19
HMGA2-209ENST00000539662 WDR63Q8IWG1 891 aa13.89□□□□□ -0.19
HMGA2-209ENST00000539662 ZNF34Q8IZ26 560 aa13.89□□□□□ -0.19
HMGA2-209ENST00000539662 BCS1LQ9Y276 419 aa13.89□□□□□ -0.19
HMGA2-209ENST00000539662 ZNF652Q9Y2D9 606 aa13.89□□□□□ -0.19
HMGA2-209ENST00000539662 ANKRD36CQ5JPF3 1778 aa13.88□□□□□ -0.19
HMGA2-209ENST00000539662 CHD4Q14839 1912 aa13.88□□□□□ -0.19
HMGA2-209ENST00000539662 EXOSC9Q06265 439 aaKnown RBP13.88□□□□□ -0.19
HMGA2-209ENST00000539662 SUSD4Q5VX71 490 aa13.88□□□□□ -0.19
HMGA2-209ENST00000539662 GIGYF2Q6Y7W6 1299 aaKnown RBP13.88□□□□□ -0.19
HMGA2-209ENST00000539662 NBPF5PQ86XG9 351 aaPredicted RBP13.88□□□□□ -0.19
HMGA2-209ENST00000539662 NUTM1Q86Y26 1132 aa13.88□□□□□ -0.19
HMGA2-209ENST00000539662 C2CD5Q86YS7 1000 aa13.88□□□□□ -0.19
HMGA2-209ENST00000539662 CNBD1Q8NA66 436 aa13.88□□□□□ -0.19
HMGA2-209ENST00000539662 DBF4Q9UBU7 674 aaPredicted RBP13.88□□□□□ -0.19
HMGA2-209ENST00000539662 ATP10DQ9P241 1426 aa13.88□□□□□ -0.19
HMGA2-209ENST00000539662 ABCC12Q96J65 1359 aa13.87□□□□□ -0.19
HMGA2-209ENST00000539662 CACNA1SQ13698 1873 aa13.87□□□□□ -0.19
HMGA2-209ENST00000539662 ARFGEF2Q9Y6D5 1785 aa13.86□□□□□ -0.19
HMGA2-209ENST00000539662 ARFGEF1Q9Y6D6 1849 aa13.86□□□□□ -0.19
HMGA2-209ENST00000539662 RGL2O15211 777 aa13.86□□□□□ -0.19
HMGA2-209ENST00000539662 TWISTNBQ3B726 338 aaPredicted RBP13.86□□□□□ -0.19
HMGA2-209ENST00000539662 ERFEQ4G0M1 354 aa13.86□□□□□ -0.19
HMGA2-209ENST00000539662 G2E3Q7L622 706 aa13.86□□□□□ -0.19
HMGA2-209ENST00000539662 SYNE4Q8N205 404 aa13.86□□□□□ -0.19
HMGA2-209ENST00000539662 BRIP1Q9BX63 1249 aa13.86□□□□□ -0.19
HMGA2-209ENST00000539662 PIM2Q9P1W9 311 aa13.86□□□□□ -0.19
HMGA2-209ENST00000539662 VAMP4O75379 141 aa13.85□□□□□ -0.19
HMGA2-209ENST00000539662 YY1P25490 414 aa13.85□□□□□ -0.19
HMGA2-209ENST00000539662 C3orf67Q6ZVT6 689 aa13.85□□□□□ -0.19
HMGA2-209ENST00000539662 CDCA7LQ96GN5 454 aa13.85□□□□□ -0.19
HMGA2-209ENST00000539662 ATP5J2-PTCD1G3V325 749 aa13.84□□□□□ -0.19
HMGA2-209ENST00000539662 H0YIN7 160 aa13.84□□□□□ -0.19
HMGA2-209ENST00000539662 GRIN3BO60391 1043 aa13.84□□□□□ -0.19
HMGA2-209ENST00000539662 NTSR2O95665 410 aa13.84□□□□□ -0.19
HMGA2-209ENST00000539662 TPTE2Q6XPS3 522 aa13.84□□□□□ -0.19
HMGA2-209ENST00000539662 ANKRD13DQ6ZTN6 518 aa13.84□□□□□ -0.19
HMGA2-209ENST00000539662 SLC51AQ86UW1 340 aa13.84□□□□□ -0.19
HMGA2-209ENST00000539662 HYPKQ9NX55 129 aa13.84□□□□□ -0.19
HMGA2-209ENST00000539662 SLX4Q8IY92 1834 aa13.84□□□□□ -0.19
HMGA2-209ENST00000539662 NPHP1O15259 732 aa13.83□□□□□ -0.2
HMGA2-209ENST00000539662 ST5P78524 1137 aa13.83□□□□□ -0.2
HMGA2-209ENST00000539662 GOLGA2Q08379 1002 aa13.83□□□□□ -0.2
HMGA2-209ENST00000539662 TCIRG1Q13488 830 aa13.83□□□□□ -0.2
HMGA2-209ENST00000539662 DALRD3Q5D0E6 543 aaKnown RBP13.83□□□□□ -0.2
HMGA2-209ENST00000539662 NLRP10Q86W26 655 aa13.83□□□□□ -0.2
HMGA2-209ENST00000539662 PLBD2Q8NHP8 589 aa13.83□□□□□ -0.2
HMGA2-209ENST00000539662 ZNF622Q969S3 477 aaKnown RBP eCLIP13.83□□□□□ -0.2
HMGA2-209ENST00000539662 ZNF219Q9P2Y4 722 aaPredicted RBP13.83□□□□□ -0.2
HMGA2-209ENST00000539662 SRGNP10124 158 aa13.82□□□□□ -0.2
HMGA2-209ENST00000539662 PDE6BP35913 854 aa13.82□□□□□ -0.2
HMGA2-209ENST00000539662 CCDC30Q5VVM6 783 aa13.82□□□□□ -0.2
HMGA2-209ENST00000539662 LAMB2P55268 1798 aa13.81□□□□□ -0.2
HMGA2-209ENST00000539662 KLRG2A4D1S0 409 aaPredicted RBP13.81□□□□□ -0.2
HMGA2-209ENST00000539662 SLC4A2P04920 1241 aa13.81□□□□□ -0.2
HMGA2-209ENST00000539662 PRELPP51888 382 aa13.81□□□□□ -0.2
HMGA2-209ENST00000539662 OLFM4Q6UX06 510 aa13.81□□□□□ -0.2
HMGA2-209ENST00000539662 ARHGAP27Q6ZUM4 889 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms