RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 TTC5Q8N0Z6 440 aa17.09■□□□□ 0.33
LIMK1-208ENST00000538333 BICC1Q9H694 974 aaKnown RBP17.09■□□□□ 0.33
LIMK1-208ENST00000538333 PA2G4Q9UQ80 394 aaKnown RBP17.09■□□□□ 0.33
LIMK1-208ENST00000538333 COL5A2P05997 1499 aaPredicted RBP17.09■□□□□ 0.33
LIMK1-208ENST00000538333 NEURL1BA8MQ27 555 aa17.09■□□□□ 0.33
LIMK1-208ENST00000538333 SSFA2P28290 1259 aa17.09■□□□□ 0.33
LIMK1-208ENST00000538333 FMNL2Q96PY5 1086 aa17.09■□□□□ 0.33
LIMK1-208ENST00000538333 METTL22Q9BUU2 404 aaPredicted RBP17.09■□□□□ 0.33
LIMK1-208ENST00000538333 ARFGEF2Q9Y6D5 1785 aa17.09■□□□□ 0.33
LIMK1-208ENST00000538333 MAP4K4O95819 1239 aaPredicted RBP17.08■□□□□ 0.33
LIMK1-208ENST00000538333 MCCP23508 829 aa17.08■□□□□ 0.33
LIMK1-208ENST00000538333 OS9Q13438 667 aaPredicted RBP17.08■□□□□ 0.33
LIMK1-208ENST00000538333 ERC1Q8IUD2 1116 aa17.08■□□□□ 0.33
LIMK1-208ENST00000538333 CLASRPQ8N2M8 674 aaKnown RBP17.08■□□□□ 0.33
LIMK1-208ENST00000538333 ZNF335Q9H4Z2 1342 aaPredicted RBP17.08■□□□□ 0.32
LIMK1-208ENST00000538333 UBR2Q8IWV8 1755 aa17.08■□□□□ 0.32
LIMK1-208ENST00000538333 AFDNP55196 1824 aaKnown RBP17.08■□□□□ 0.32
LIMK1-208ENST00000538333 PRDM11Q9NQV5 511 aa17.08■□□□□ 0.32
LIMK1-208ENST00000538333 SHANK3Q9BYB0 1731 aa17.07■□□□□ 0.32
LIMK1-208ENST00000538333 GLRX3O76003 335 aaKnown RBP17.07■□□□□ 0.32
LIMK1-208ENST00000538333 CYP2E1P05181 493 aaPredicted RBP17.07■□□□□ 0.32
LIMK1-208ENST00000538333 CABP4P57796 275 aa17.07■□□□□ 0.32
LIMK1-208ENST00000538333 GCKRQ14397 625 aa17.07■□□□□ 0.32
LIMK1-208ENST00000538333 CNTROBQ8N137 903 aa17.07■□□□□ 0.32
LIMK1-208ENST00000538333 SLAIN2Q9P270 581 aa17.07■□□□□ 0.32
LIMK1-208ENST00000538333 SGSM2O43147 1006 aa17.06■□□□□ 0.32
LIMK1-208ENST00000538333 NEK4P51957 841 aa17.06■□□□□ 0.32
LIMK1-208ENST00000538333 NEXNQ0ZGT2 675 aa17.06■□□□□ 0.32
LIMK1-208ENST00000538333 CWC22Q9HCG8 908 aaKnown RBP17.06■□□□□ 0.32
LIMK1-208ENST00000538333 SASH1O94885 1247 aa17.06■□□□□ 0.32
LIMK1-208ENST00000538333 ANKRD13DQ6ZTN6 518 aa17.06■□□□□ 0.32
LIMK1-208ENST00000538333 PAPPAQ13219 1627 aa17.05■□□□□ 0.32
LIMK1-208ENST00000538333 MYD88Q99836 296 aa17.05■□□□□ 0.32
LIMK1-208ENST00000538333 BRPF3Q9ULD4 1205 aa17.05■□□□□ 0.32
LIMK1-208ENST00000538333 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.05■□□□□ 0.32
LIMK1-208ENST00000538333 PCDH11XQ9BZA7 1347 aa17.05■□□□□ 0.32
LIMK1-208ENST00000538333 PCDH11YQ9BZA8 1340 aa17.05■□□□□ 0.32
LIMK1-208ENST00000538333 HSPA4P34932 840 aa17.05■□□□□ 0.32
LIMK1-208ENST00000538333 ZGPATQ8N5A5 531 aaKnown RBP17.05■□□□□ 0.32
LIMK1-208ENST00000538333 ECHDC1Q9NTX5 307 aa17.05■□□□□ 0.32
LIMK1-208ENST00000538333 RAD50Q92878 1312 aa17.05■□□□□ 0.32
LIMK1-208ENST00000538333 FSD2A1L4K1 749 aa17.04■□□□□ 0.32
LIMK1-208ENST00000538333 PIP4K2AP48426 406 aaPredicted RBP17.04■□□□□ 0.32
LIMK1-208ENST00000538333 MCM2P49736 904 aa17.04■□□□□ 0.32
LIMK1-208ENST00000538333 NUCB2P80303 420 aa17.04■□□□□ 0.32
LIMK1-208ENST00000538333 ZCRB1Q8TBF4 217 aaKnown RBP17.04■□□□□ 0.32
LIMK1-208ENST00000538333 TOM1L2Q6ZVM7 507 aa17.04■□□□□ 0.32
LIMK1-208ENST00000538333 GZF1Q9H116 711 aaPredicted RBP17.04■□□□□ 0.32
LIMK1-208ENST00000538333 NHSL1Q5SYE7 1610 aa17.03■□□□□ 0.32
LIMK1-208ENST00000538333 COL15A1P39059 1388 aa17.03■□□□□ 0.32
LIMK1-208ENST00000538333 IFIT2P09913 472 aaKnown RBP17.03■□□□□ 0.32
LIMK1-208ENST00000538333 PTMSP20962 102 aa17.03■□□□□ 0.32
LIMK1-208ENST00000538333 EPHA10Q5JZY3 1008 aa17.03■□□□□ 0.32
LIMK1-208ENST00000538333 TMX3Q96JJ7 454 aa17.03■□□□□ 0.32
LIMK1-208ENST00000538333 LSG1Q9H089 658 aaKnown RBP17.03■□□□□ 0.32
LIMK1-208ENST00000538333 BAG4O95429 457 aaKnown RBP17.02■□□□□ 0.32
LIMK1-208ENST00000538333 PKP1Q13835 747 aa17.02■□□□□ 0.32
LIMK1-208ENST00000538333 NKX1-1Q15270 411 aaPredicted RBP17.02■□□□□ 0.32
LIMK1-208ENST00000538333 AACSQ86V21 672 aa17.02■□□□□ 0.32
LIMK1-208ENST00000538333 IL27Q8NEV9 243 aa17.02■□□□□ 0.32
LIMK1-208ENST00000538333 KCPQ6ZWJ8 1503 aa17.02■□□□□ 0.32
LIMK1-208ENST00000538333 G3BP1Q13283 466 aaKnown RBP eCLIP17.02■□□□□ 0.31
LIMK1-208ENST00000538333 CUL4AQ13619 759 aa17.02■□□□□ 0.31
LIMK1-208ENST00000538333 EAF2Q96CJ1 260 aaPredicted RBP17.02■□□□□ 0.31
LIMK1-208ENST00000538333 GPATCH3Q96I76 525 aa17.02■□□□□ 0.31
LIMK1-208ENST00000538333 CARD10Q9BWT7 1032 aa17.02■□□□□ 0.31
LIMK1-208ENST00000538333 NUP188Q5SRE5 1749 aa17.02■□□□□ 0.31
LIMK1-208ENST00000538333 ERBB4Q15303 1308 aa17.01■□□□□ 0.31
LIMK1-208ENST00000538333 ERVV-2B6SEH9 535 aa17.01■□□□□ 0.31
LIMK1-208ENST00000538333 L1TD1Q5T7N2 865 aaKnown RBP17.01■□□□□ 0.31
LIMK1-208ENST00000538333 SKOR2Q2VWA4 1001 aaPredicted RBP17■□□□□ 0.31
LIMK1-208ENST00000538333 CWC27Q6UX04 472 aaKnown RBP17■□□□□ 0.31
LIMK1-208ENST00000538333 PLBD2Q8NHP8 589 aa17■□□□□ 0.31
LIMK1-208ENST00000538333 KLHDC4Q8TBB5 520 aa17■□□□□ 0.31
LIMK1-208ENST00000538333 NBPF26B4DH59 902 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 IL2RBP14784 551 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 RABL6Q3YEC7 729 aaPredicted RBP16.99■□□□□ 0.31
LIMK1-208ENST00000538333 NBPF14Q5TI25 921 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 NBPF10Q6P3W6 841 aaKnown RBP16.99■□□□□ 0.31
LIMK1-208ENST00000538333 NBPF15Q8N660 670 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 ZDHHC9Q9Y397 364 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 TOGARAM1Q9Y4F4 1720 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 RFX5P48382 616 aaPredicted RBP16.99■□□□□ 0.31
LIMK1-208ENST00000538333 CASP7P55210 303 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 EVI5LQ96CN4 794 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 UPF3BQ9BZI7 483 aaKnown RBP16.99■□□□□ 0.31
LIMK1-208ENST00000538333 SIL1Q9H173 461 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 COPRSQ9NQ92 184 aa16.99■□□□□ 0.31
LIMK1-208ENST00000538333 TNS2Q63HR2 1409 aa16.98■□□□□ 0.31
LIMK1-208ENST00000538333 GOLGA6L3A6NEY3 463 aa16.98■□□□□ 0.31
LIMK1-208ENST00000538333 SNX14Q9Y5W7 946 aa16.98■□□□□ 0.31
LIMK1-208ENST00000538333 INTS4Q96HW7 963 aaKnown RBP16.98■□□□□ 0.31
LIMK1-208ENST00000538333 CCDC8Q9H0W5 538 aaPredicted RBP16.98■□□□□ 0.31
LIMK1-208ENST00000538333 DIAPH3Q9NSV4 1193 aa16.98■□□□□ 0.31
LIMK1-208ENST00000538333 TLR7Q9NYK1 1049 aaKnown RBP16.98■□□□□ 0.31
LIMK1-208ENST00000538333 TJP1Q07157 1748 aa16.97■□□□□ 0.31
LIMK1-208ENST00000538333 GOLGA6L22H0YM25 854 aa16.97■□□□□ 0.31
LIMK1-208ENST00000538333 UBE3BQ7Z3V4 1068 aa16.97■□□□□ 0.31
LIMK1-208ENST00000538333 RUFY2Q8WXA3 655 aa16.97■□□□□ 0.31
LIMK1-208ENST00000538333 ATP5J2-PTCD1G3V325 749 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms