RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 SKOR2Q2VWA4 1001 aaPredicted RBP8.08□□□□□ -1.12
USP28-206ENST00000538224 L1TD1Q5T7N2 865 aaKnown RBP8.08□□□□□ -1.12
USP28-206ENST00000538224 RIC3Q7Z5B4 369 aa8.08□□□□□ -1.12
USP28-206ENST00000538224 RUFY2Q8WXA3 655 aa8.08□□□□□ -1.12
USP28-206ENST00000538224 RILPL2Q969X0 211 aa8.08□□□□□ -1.12
USP28-206ENST00000538224 PRDM11Q9NQV5 511 aa8.08□□□□□ -1.12
USP28-206ENST00000538224 ISY1Q9ULR0 285 aaKnown RBP8.08□□□□□ -1.12
USP28-206ENST00000538224 KCPQ6ZWJ8 1503 aa8.08□□□□□ -1.12
USP28-206ENST00000538224 ANKRD36CQ5JPF3 1778 aa8.07□□□□□ -1.12
USP28-206ENST00000538224 AHDC1Q5TGY3 1603 aaPredicted RBP8.07□□□□□ -1.12
USP28-206ENST00000538224 TNS2Q63HR2 1409 aa8.07□□□□□ -1.12
USP28-206ENST00000538224 HIP1O00291 1037 aa8.07□□□□□ -1.12
USP28-206ENST00000538224 NFATC2IPQ8NCF5 419 aa8.07□□□□□ -1.12
USP28-206ENST00000538224 ZCRB1Q8TBF4 217 aaKnown RBP8.07□□□□□ -1.12
USP28-206ENST00000538224 METTL22Q9BUU2 404 aaPredicted RBP8.07□□□□□ -1.12
USP28-206ENST00000538224 CARD10Q9BWT7 1032 aa8.07□□□□□ -1.12
USP28-206ENST00000538224 SLAIN2Q9P270 581 aa8.07□□□□□ -1.12
USP28-206ENST00000538224 ITGB4P16144 1822 aa8.07□□□□□ -1.12
USP28-206ENST00000538224 SPEF2Q9C093 1822 aa8.07□□□□□ -1.12
USP28-206ENST00000538224 RAD50Q92878 1312 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 NEURL1BA8MQ27 555 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 CYP27B1O15528 508 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 ANXA1P04083 346 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 IFIT2P09913 472 aaKnown RBP8.06□□□□□ -1.12
USP28-206ENST00000538224 HSPA2P54652 639 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 G3BP1Q13283 466 aaKnown RBP eCLIP8.06□□□□□ -1.12
USP28-206ENST00000538224 PDIA6Q15084 440 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 NKX1-1Q15270 411 aaPredicted RBP8.06□□□□□ -1.12
USP28-206ENST00000538224 CHRNA2Q15822 529 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 PROSER3Q2NL68 480 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 CLEC17AQ6ZS10 378 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 TOM1L2Q6ZVM7 507 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 SPRYD3Q8NCJ5 442 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 PI4K2BQ8TCG2 481 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 DDX17Q92841 729 aaKnown RBP8.06□□□□□ -1.12
USP28-206ENST00000538224 ZNF496Q96IT1 587 aaPredicted RBP8.06□□□□□ -1.12
USP28-206ENST00000538224 IL1RAPL2Q9NP60 686 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 ANO2Q9NQ90 1003 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 ECHDC1Q9NTX5 307 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 RFX7Q2KHR2 1363 aa8.06□□□□□ -1.12
USP28-206ENST00000538224 IL2RBP14784 551 aa8.05□□□□□ -1.12
USP28-206ENST00000538224 GCKRQ14397 625 aa8.05□□□□□ -1.12
USP28-206ENST00000538224 CWF19L2Q2TBE0 894 aaKnown RBP8.05□□□□□ -1.12
USP28-206ENST00000538224 ANKRD13DQ6ZTN6 518 aa8.05□□□□□ -1.12
USP28-206ENST00000538224 KIAA1211Q6ZU35 1233 aa8.05□□□□□ -1.12
USP28-206ENST00000538224 PLBD2Q8NHP8 589 aa8.05□□□□□ -1.12
USP28-206ENST00000538224 CABLES1Q8TDN4 633 aa8.05□□□□□ -1.12
USP28-206ENST00000538224 XAGE3Q8WTP9 111 aa8.05□□□□□ -1.12
USP28-206ENST00000538224 DIAPH3Q9NSV4 1193 aa8.05□□□□□ -1.12
USP28-206ENST00000538224 ROBO1Q9Y6N7 1651 aa8.05□□□□□ -1.12
USP28-206ENST00000538224 MYH3P11055 1940 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 SGSM2O43147 1006 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 TRAK2O60296 914 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 CD2BP2O95400 341 aaKnown RBP8.04□□□□□ -1.12
USP28-206ENST00000538224 AIMP1Q12904 312 aaKnown RBP8.04□□□□□ -1.12
USP28-206ENST00000538224 SLC39A6Q13433 755 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 COPS6Q7L5N1 327 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 TICAM2Q86XR7 235 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 NUTM1Q86Y26 1132 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 TNPO1Q92973 898 aaKnown RBP8.04□□□□□ -1.12
USP28-206ENST00000538224 EVI5LQ96CN4 794 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 INTS4Q96HW7 963 aaKnown RBP8.04□□□□□ -1.12
USP28-206ENST00000538224 SUCLG2Q96I99 432 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 MYD88Q99836 296 aa8.04□□□□□ -1.12
USP28-206ENST00000538224 RBM42Q9BTD8 480 aaKnown RBP8.04□□□□□ -1.12
USP28-206ENST00000538224 BICC1Q9H694 974 aaKnown RBP8.04□□□□□ -1.12
USP28-206ENST00000538224 CICQ96RK0 1608 aaPredicted RBP8.03□□□□□ -1.12
USP28-206ENST00000538224 PRAMEF22A3QJZ6 481 aa8.03□□□□□ -1.12
USP28-206ENST00000538224 IGKV5-2P06315 115 aa8.03□□□□□ -1.12
USP28-206ENST00000538224 MYL6BP14649 208 aa8.03□□□□□ -1.12
USP28-206ENST00000538224 HSPA4P34932 840 aa8.03□□□□□ -1.12
USP28-206ENST00000538224 TSHZ3Q63HK5 1081 aa8.03□□□□□ -1.12
USP28-206ENST00000538224 LRP10Q7Z4F1 713 aa8.03□□□□□ -1.12
USP28-206ENST00000538224 TEX13AQ9BXU3 409 aaPredicted RBP8.03□□□□□ -1.12
USP28-206ENST00000538224 NWD2Q9ULI1 1742 aa8.03□□□□□ -1.12
USP28-206ENST00000538224 COL16A1Q07092 1604 aaPredicted RBP8.03□□□□□ -1.12
USP28-206ENST00000538224 ZNF335Q9H4Z2 1342 aaPredicted RBP8.03□□□□□ -1.12
USP28-206ENST00000538224 NEK4P51957 841 aa8.02□□□□□ -1.13
USP28-206ENST00000538224 EVA1CP58658 441 aa8.02□□□□□ -1.13
USP28-206ENST00000538224 CUL4AQ13619 759 aa8.02□□□□□ -1.13
USP28-206ENST00000538224 RABL6Q3YEC7 729 aaPredicted RBP8.02□□□□□ -1.13
USP28-206ENST00000538224 AACSQ86V21 672 aa8.02□□□□□ -1.13
USP28-206ENST00000538224 COPRSQ9NQ92 184 aa8.02□□□□□ -1.13
USP28-206ENST00000538224 NRAPQ86VF7 1730 aa8.02□□□□□ -1.13
USP28-206ENST00000538224 DOT1LQ8TEK3 1739 aa8.02□□□□□ -1.13
USP28-206ENST00000538224 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.02□□□□□ -1.13
USP28-206ENST00000538224 PHLPP1O60346 1717 aa8.01□□□□□ -1.13
USP28-206ENST00000538224 GOLGA6L3A6NEY3 463 aa8.01□□□□□ -1.13
USP28-206ENST00000538224 CYP2E1P05181 493 aaPredicted RBP8.01□□□□□ -1.13
USP28-206ENST00000538224 UNC5CLQ8IV45 518 aa8.01□□□□□ -1.13
USP28-206ENST00000538224 VSIG10Q8N0Z9 540 aa8.01□□□□□ -1.13
USP28-206ENST00000538224 KAZALD1Q96I82 304 aa8.01□□□□□ -1.13
USP28-206ENST00000538224 CWC25Q9NXE8 425 aaPredicted RBP8.01□□□□□ -1.13
USP28-206ENST00000538224 DISP2A7MBM2 1401 aa8.01□□□□□ -1.13
USP28-206ENST00000538224 MYH7P12883 1935 aa8.01□□□□□ -1.13
USP28-206ENST00000538224 PDIA4P13667 645 aaKnown RBP8□□□□□ -1.13
USP28-206ENST00000538224 ZKSCAN1P17029 563 aaPredicted RBP8□□□□□ -1.13
USP28-206ENST00000538224 RNF20Q5VTR2 975 aa8□□□□□ -1.13
USP28-206ENST00000538224 CCDC191Q8NCU4 936 aa8□□□□□ -1.13
USP28-206ENST00000538224 TMX3Q96JJ7 454 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms