RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 UBTFL1P0CB47 393 aaPredicted RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 MNAT1P51948 309 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 LRRFIP2Q9Y608 721 aaKnown RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 PTGS1P23219 599 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 AKAP17AQ02040 695 aaKnown RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 TTC22Q5TAA0 569 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 PROSER2Q86WR7 435 aaPredicted RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 NUTM1Q86Y26 1132 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 GPT2Q8TD30 523 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 C9orf78Q9NZ63 289 aaPredicted RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 CNPY2Q9Y2B0 182 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 CASTP20810 708 aaKnown RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 CT47A1Q5JQC4 288 aaPredicted RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 RRP12Q5JTH9 1297 aaKnown RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 USP48Q86UV5 1035 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 DNAAF4Q8WXU2 420 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 SSH1Q8WYL5 1049 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 CABP2Q9NPB3 220 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 SH2B1Q9NRF2 756 aaPredicted RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 DDX54Q8TDD1 881 aaKnown RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 SMARCE1Q969G3 411 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 USP26Q9BXU7 913 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 TSPYL4Q9UJ04 414 aa6.29□□□□□ -1.4
PTPRD-213ENST00000537002 TUBB2AQ13885 445 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 MSL3Q8N5Y2 521 aaKnown RBP6.28□□□□□ -1.4
PTPRD-213ENST00000537002 COG3Q96JB2 828 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 TUBB2BQ9BVA1 445 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 G3BP1Q13283 466 aaKnown RBP eCLIP6.28□□□□□ -1.4
PTPRD-213ENST00000537002 NFXL1Q6ZNB6 911 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 PPFIBP1Q86W92 1011 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 IL17RAQ96F46 866 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 RGS12O14924 1447 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 CCDC150Q8NCX0 1101 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 MRFAP1L1Q96HT8 127 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 DCAF8L1A6NGE4 600 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 TOM1O60784 492 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 CWC27Q6UX04 472 aaKnown RBP6.28□□□□□ -1.4
PTPRD-213ENST00000537002 KRBA2Q6ZNG9 492 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 TXNDC2Q86VQ3 553 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 STK11IPQ8N1F8 1099 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 KIF2CQ99661 725 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 ZSWIM4Q9H7M6 989 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 LIG1P18858 919 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 TTC31Q49AM3 519 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-213ENST00000537002 RNF187Q5TA31 235 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-213ENST00000537002 TMC6Q7Z403 805 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 KIF1BPQ96EK5 621 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 NOS1P29475 1434 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 NPHP3Q7Z494 1330 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 ZSCAN12O43309 604 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 RLBP1P12271 317 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 CFAP100Q494V2 611 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 IQUBQ8NA54 791 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 AOX1Q06278 1338 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 NEO1Q92859 1461 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 HSP90AB4PQ58FF6 505 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 IMPACTQ9P2X3 320 aa6.28□□□□□ -1.4
PTPRD-213ENST00000537002 MYO1BO43795 1136 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 ZGPATQ8N5A5 531 aaKnown RBP6.27□□□□□ -1.41
PTPRD-213ENST00000537002 NUTM2FA1L443 756 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 AMPHP49418 695 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 CPLX2Q6PUV4 134 aaKnown RBP6.27□□□□□ -1.41
PTPRD-213ENST00000537002 TMX3Q96JJ7 454 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 DRC1Q96MC2 740 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 DCTPP1Q9H773 170 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 IL1RAPL2Q9NP60 686 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 SLC52A1Q9NWF4 448 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 CCDC196A0A1B0GTZ2 297 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 SKILP12757 684 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 PTCH1Q13635 1447 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 ATP2B1P20020 1258 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 GUCY2CP25092 1073 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 PLCH2O75038 1416 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 PRPF40BQ6NWY9 871 aaKnown RBP6.27□□□□□ -1.41
PTPRD-213ENST00000537002 MICALL1Q8N3F8 863 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 GNAI2P04899 355 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 SMARCC1Q92922 1105 aaPredicted RBP6.27□□□□□ -1.41
PTPRD-213ENST00000537002 CRACR2AQ9BSW2 395 aa6.27□□□□□ -1.41
PTPRD-213ENST00000537002 FEZ2Q9UHY8 353 aaPredicted RBP6.27□□□□□ -1.41
PTPRD-213ENST00000537002 MCM3P25205 808 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 GJB2P29033 226 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 FILIP1LQ4L180 1135 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 CEP89Q96ST8 783 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 SLC4A2P04920 1241 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 ARHGAP29Q52LW3 1261 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 ZNF518AQ6AHZ1 1483 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 GNAI3P08754 354 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 ANO6Q4KMQ2 910 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 CFAP70Q5T0N1 1121 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 PSDA5PKW4 1024 aaPredicted RBP6.26□□□□□ -1.41
PTPRD-213ENST00000537002 GOLGA6L10A6NI86 522 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 STX6O43752 255 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 RBM6P78332 1123 aaKnown RBP6.26□□□□□ -1.41
PTPRD-213ENST00000537002 SARM1Q6SZW1 724 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 SPINK5Q9NQ38 1064 aaPredicted RBP6.26□□□□□ -1.41
PTPRD-213ENST00000537002 ADGRB2O60241 1585 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 NF2P35240 595 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 SSR1P43307 286 aaKnown RBP6.26□□□□□ -1.41
PTPRD-213ENST00000537002 CCDC181Q5TID7 509 aa6.26□□□□□ -1.41
PTPRD-213ENST00000537002 OSBPL3Q9H4L5 887 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms