RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 KIF6Q6ZMV9 814 aa19.49■□□□□ 0.71
CPSF1-208ENST00000532560 NECTIN2Q92692 538 aa19.49■□□□□ 0.71
CPSF1-208ENST00000532560 TSR2Q969E8 191 aaKnown RBP19.49■□□□□ 0.71
CPSF1-208ENST00000532560 DDX21Q9NR30 783 aaKnown RBP eCLIP19.49■□□□□ 0.71
CPSF1-208ENST00000532560 TTLL7Q6ZT98 887 aa19.48■□□□□ 0.71
CPSF1-208ENST00000532560 CHPF2Q9P2E5 772 aa19.48■□□□□ 0.71
CPSF1-208ENST00000532560 ATP10DQ9P241 1426 aa19.48■□□□□ 0.71
CPSF1-208ENST00000532560 ZNF521Q96K83 1311 aa19.48■□□□□ 0.71
CPSF1-208ENST00000532560 ANXA1P04083 346 aa19.47■□□□□ 0.71
CPSF1-208ENST00000532560 MIER1Q8N108 512 aa19.47■□□□□ 0.71
CPSF1-208ENST00000532560 C8orf58Q8NAV2 365 aa19.47■□□□□ 0.71
CPSF1-208ENST00000532560 SETDB2Q96T68 719 aa19.47■□□□□ 0.71
CPSF1-208ENST00000532560 DBF4Q9UBU7 674 aaPredicted RBP19.47■□□□□ 0.71
CPSF1-208ENST00000532560 FANCIQ9NVI1 1328 aa19.47■□□□□ 0.71
CPSF1-208ENST00000532560 NUP98P52948 1817 aa19.46■□□□□ 0.71
CPSF1-208ENST00000532560 HLFQ16534 295 aa19.46■□□□□ 0.71
CPSF1-208ENST00000532560 N4BP2Q86UW6 1770 aaPredicted RBP19.46■□□□□ 0.71
CPSF1-208ENST00000532560 CHMP4AQ9BY43 222 aa19.45■□□□□ 0.7
CPSF1-208ENST00000532560 BRCA1P38398 1863 aaKnown RBP19.44■□□□□ 0.7
CPSF1-208ENST00000532560 ELL2O00472 640 aaPredicted RBP19.44■□□□□ 0.7
CPSF1-208ENST00000532560 GPR162Q16538 588 aa19.44■□□□□ 0.7
CPSF1-208ENST00000532560 TSPYL6Q8N831 410 aa19.44■□□□□ 0.7
CPSF1-208ENST00000532560 XAGE3Q8WTP9 111 aa19.44■□□□□ 0.7
CPSF1-208ENST00000532560 ZBTB3Q9H5J0 574 aa19.44■□□□□ 0.7
CPSF1-208ENST00000532560 NIP7Q9Y221 180 aaKnown RBP eCLIP19.44■□□□□ 0.7
CPSF1-208ENST00000532560 PRR5LQ6MZQ0 368 aa19.43■□□□□ 0.7
CPSF1-208ENST00000532560 GIGYF2Q6Y7W6 1299 aaKnown RBP19.43■□□□□ 0.7
CPSF1-208ENST00000532560 COPS6Q7L5N1 327 aa19.43■□□□□ 0.7
CPSF1-208ENST00000532560 CNBD1Q8NA66 436 aa19.43■□□□□ 0.7
CPSF1-208ENST00000532560 HYPKQ9NX55 129 aa19.43■□□□□ 0.7
CPSF1-208ENST00000532560 ANKRD31Q8N7Z5 1873 aa19.42■□□□□ 0.7
CPSF1-208ENST00000532560 DPEP1P16444 411 aa19.42■□□□□ 0.7
CPSF1-208ENST00000532560 YBX3P16989 372 aaKnown RBP eCLIP19.42■□□□□ 0.71e-6■□□□□ 11.3
CPSF1-208ENST00000532560 PELP1Q8IZL8 1130 aaKnown RBP19.42■□□□□ 0.7
CPSF1-208ENST00000532560 MYH16Q9H6N6 1097 aa19.42■□□□□ 0.7
CPSF1-208ENST00000532560 SPINK5Q9NQ38 1064 aaPredicted RBP19.42■□□□□ 0.7
CPSF1-208ENST00000532560 IBTKQ9P2D0 1353 aaPredicted RBP19.42■□□□□ 0.7
CPSF1-208ENST00000532560 ANKRD36CQ5JPF3 1778 aa19.42■□□□□ 0.7
CPSF1-208ENST00000532560 DLEC1Q9Y238 1755 aa19.42■□□□□ 0.7
CPSF1-208ENST00000532560 A0A0G2JLW4 131 aa19.41■□□□□ 0.7
CPSF1-208ENST00000532560 TWISTNBQ3B726 338 aaPredicted RBP19.41■□□□□ 0.7
CPSF1-208ENST00000532560 CCDC30Q5VVM6 783 aa19.41■□□□□ 0.7
CPSF1-208ENST00000532560 NBPF5PQ86XG9 351 aaPredicted RBP19.41■□□□□ 0.7
CPSF1-208ENST00000532560 KCNA3P22001 575 aa19.4■□□□□ 0.7
CPSF1-208ENST00000532560 ST5P78524 1137 aa19.4■□□□□ 0.7
CPSF1-208ENST00000532560 GOLGA2Q08379 1002 aa19.4■□□□□ 0.7
CPSF1-208ENST00000532560 AIMP1Q12904 312 aaKnown RBP19.4■□□□□ 0.7
CPSF1-208ENST00000532560 NPHP1O15259 732 aa19.39■□□□□ 0.69
CPSF1-208ENST00000532560 GRIN3BO60391 1043 aa19.39■□□□□ 0.69
CPSF1-208ENST00000532560 ZNF34Q8IZ26 560 aa19.39■□□□□ 0.69
CPSF1-208ENST00000532560 BRIP1Q9BX63 1249 aa19.39■□□□□ 0.69
CPSF1-208ENST00000532560 UBN2Q6ZU65 1347 aa19.39■□□□□ 0.69
CPSF1-208ENST00000532560 CHRNA5P30532 468 aa19.38■□□□□ 0.69
CPSF1-208ENST00000532560 HSP90AB3PQ58FF7 597 aa19.38■□□□□ 0.69
CPSF1-208ENST00000532560 PLBD2Q8NHP8 589 aa19.38■□□□□ 0.69
CPSF1-208ENST00000532560 PDZRN3Q9UPQ7 1066 aa19.38■□□□□ 0.69
CPSF1-208ENST00000532560 ARFGEF2Q9Y6D5 1785 aa19.37■□□□□ 0.69
CPSF1-208ENST00000532560 COL11A2P13942 1736 aaPredicted RBP19.37■□□□□ 0.69
CPSF1-208ENST00000532560 PDE6BP35913 854 aa19.37■□□□□ 0.69
CPSF1-208ENST00000532560 EXOSC9Q06265 439 aaKnown RBP19.37■□□□□ 0.69
CPSF1-208ENST00000532560 TPTE2Q6XPS3 522 aa19.37■□□□□ 0.69
CPSF1-208ENST00000532560 NYXQ9GZU5 481 aa19.37■□□□□ 0.69
CPSF1-208ENST00000532560 ARFGEF1Q9Y6D6 1849 aa19.37■□□□□ 0.69
CPSF1-208ENST00000532560 RIC1Q4ADV7 1423 aa19.36■□□□□ 0.69
CPSF1-208ENST00000532560 GPTP24298 496 aa19.36■□□□□ 0.69
CPSF1-208ENST00000532560 PARP10Q53GL7 1025 aa19.36■□□□□ 0.69
CPSF1-208ENST00000532560 ANKRD13DQ6ZTN6 518 aa19.36■□□□□ 0.69
CPSF1-208ENST00000532560 STK31Q9BXU1 1019 aa19.36■□□□□ 0.69
CPSF1-208ENST00000532560 PIM2Q9P1W9 311 aa19.36■□□□□ 0.69
CPSF1-208ENST00000532560 WWC3Q9ULE0 1092 aa19.36■□□□□ 0.69
CPSF1-208ENST00000532560 E9PSI1 815 aa19.35■□□□□ 0.69
CPSF1-208ENST00000532560 TCIRG1Q13488 830 aa19.35■□□□□ 0.69
CPSF1-208ENST00000532560 C2CD5Q86YS7 1000 aa19.35■□□□□ 0.69
CPSF1-208ENST00000532560 CCDC24Q8N4L8 307 aa19.35■□□□□ 0.69
CPSF1-208ENST00000532560 CHD4Q14839 1912 aa19.35■□□□□ 0.69
CPSF1-208ENST00000532560 H0YIN7 160 aa19.34■□□□□ 0.69
CPSF1-208ENST00000532560 VAMP4O75379 141 aa19.34■□□□□ 0.69
CPSF1-208ENST00000532560 NTSR2O95665 410 aa19.34■□□□□ 0.69
CPSF1-208ENST00000532560 PHAXQ9H814 394 aaKnown RBP19.34■□□□□ 0.69
CPSF1-208ENST00000532560 BCS1LQ9Y276 419 aa19.34■□□□□ 0.69
CPSF1-208ENST00000532560 CACNA1FO60840 1977 aa19.33■□□□□ 0.69
CPSF1-208ENST00000532560 TNRC6CQ9HCJ0 1690 aaKnown RBP19.33■□□□□ 0.69
CPSF1-208ENST00000532560 ABCC12Q96J65 1359 aa19.33■□□□□ 0.69
CPSF1-208ENST00000532560 RNF123Q5XPI4 1314 aa19.33■□□□□ 0.69
CPSF1-208ENST00000532560 KLRG2A4D1S0 409 aaPredicted RBP19.33■□□□□ 0.68
CPSF1-208ENST00000532560 FAM177BA6PVY3 158 aa19.33■□□□□ 0.68
CPSF1-208ENST00000532560 DALRD3Q5D0E6 543 aaKnown RBP19.33■□□□□ 0.68
CPSF1-208ENST00000532560 SUSD4Q5VX71 490 aa19.33■□□□□ 0.68
CPSF1-208ENST00000532560 PPP1R42Q7Z4L9 355 aa19.33■□□□□ 0.68
CPSF1-208ENST00000532560 GOLGB1Q14789 3259 aaKnown RBP19.32■□□□□ 0.68
CPSF1-208ENST00000532560 SLFN5Q08AF3 891 aa19.32■□□□□ 0.68
CPSF1-208ENST00000532560 DDX58O95786 925 aaKnown RBP19.31■□□□□ 0.68
CPSF1-208ENST00000532560 GTF2E1P29083 439 aaPredicted RBP19.31■□□□□ 0.68
CPSF1-208ENST00000532560 NLRP10Q86W26 655 aa19.31■□□□□ 0.68
CPSF1-208ENST00000532560 NUTM1Q86Y26 1132 aa19.31■□□□□ 0.68
CPSF1-208ENST00000532560 ISCA1Q9BUE6 129 aa19.31■□□□□ 0.68
CPSF1-208ENST00000532560 UTP14AQ9BVJ6 771 aaKnown RBP19.31■□□□□ 0.68
CPSF1-208ENST00000532560 TCERG1O14776 1098 aaKnown RBP19.3■□□□□ 0.68
CPSF1-208ENST00000532560 SRGNP10124 158 aa19.3■□□□□ 0.68
CPSF1-208ENST00000532560 ERFEQ4G0M1 354 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms