RNA–Protein interactions for RNA: ENST00000532088.1

COPB1-208, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 3

Gene COPB1, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-208ENST00000532088 APBA3O96018 575 aa16.16■□□□□ 0.18
COPB1-208ENST00000532088 SNRPA1P09661 255 aaKnown RBP16.16■□□□□ 0.18
COPB1-208ENST00000532088 SIK1P57059 783 aa16.16■□□□□ 0.18
COPB1-208ENST00000532088 SF3B2Q13435 895 aaKnown RBP16.16■□□□□ 0.18
COPB1-208ENST00000532088 ZNF428Q96B54 188 aa16.16■□□□□ 0.18
COPB1-208ENST00000532088 GIGYF1O75420 1035 aaPredicted RBP16.15■□□□□ 0.18
COPB1-208ENST00000532088 LAMB4A4D0S4 1761 aa16.14■□□□□ 0.17
COPB1-208ENST00000532088 EP400Q96L91 3159 aa16.14■□□□□ 0.17
COPB1-208ENST00000532088 PTCD1O75127 700 aaKnown RBP16.13■□□□□ 0.17
COPB1-208ENST00000532088 BAG6P46379 1132 aa16.13■□□□□ 0.17
COPB1-208ENST00000532088 EXOSC9Q06265 439 aaKnown RBP16.13■□□□□ 0.17
COPB1-208ENST00000532088 TWISTNBQ3B726 338 aaPredicted RBP16.13■□□□□ 0.17
COPB1-208ENST00000532088 C5P01031 1676 aa16.13■□□□□ 0.17
COPB1-208ENST00000532088 TJP1Q07157 1748 aa16.13■□□□□ 0.17
COPB1-208ENST00000532088 ILDR2Q71H61 639 aa16.12■□□□□ 0.17
COPB1-208ENST00000532088 C8orf58Q8NAV2 365 aa16.12■□□□□ 0.17
COPB1-208ENST00000532088 SLC4A9Q96Q91 983 aa16.12■□□□□ 0.17
COPB1-208ENST00000532088 CCNL1Q9UK58 526 aaPredicted RBP16.12■□□□□ 0.17
COPB1-208ENST00000532088 ERBB4Q15303 1308 aa16.12■□□□□ 0.17
COPB1-208ENST00000532088 VAMP4O75379 141 aa16.11■□□□□ 0.17
COPB1-208ENST00000532088 STARD3NLO95772 234 aa16.11■□□□□ 0.17
COPB1-208ENST00000532088 ATP6V1AP38606 617 aa16.11■□□□□ 0.17
COPB1-208ENST00000532088 UPF1Q92900 1129 aaKnown RBP eCLIP16.11■□□□□ 0.17
COPB1-208ENST00000532088 CAMKK2Q96RR4 588 aa16.11■□□□□ 0.17
COPB1-208ENST00000532088 COL5A3P25940 1745 aaPredicted RBP16.11■□□□□ 0.17
COPB1-208ENST00000532088 TXNRD1Q16881 649 aa16.1■□□□□ 0.17
COPB1-208ENST00000532088 KRT24Q2M2I5 525 aa16.1■□□□□ 0.17
COPB1-208ENST00000532088 TSPYL6Q8N831 410 aa16.1■□□□□ 0.17
COPB1-208ENST00000532088 RREB1Q92766 1687 aa16.09■□□□□ 0.17
COPB1-208ENST00000532088 CYP19A1P11511 503 aaPredicted RBP16.09■□□□□ 0.17
COPB1-208ENST00000532088 RC3H1Q5TC82 1133 aaKnown RBP16.09■□□□□ 0.17
COPB1-208ENST00000532088 CCDC30Q5VVM6 783 aa16.09■□□□□ 0.17
COPB1-208ENST00000532088 CNTNAP4Q9C0A0 1308 aa16.09■□□□□ 0.17
COPB1-208ENST00000532088 TAF1LQ8IZX4 1826 aa16.08■□□□□ 0.17
COPB1-208ENST00000532088 ITPK1Q13572 414 aa16.08■□□□□ 0.16
COPB1-208ENST00000532088 ALDH1L2Q3SY69 923 aa16.08■□□□□ 0.16
COPB1-208ENST00000532088 DNAJC10Q8IXB1 793 aa16.08■□□□□ 0.16
COPB1-208ENST00000532088 USP16Q9Y5T5 823 aa16.08■□□□□ 0.16
COPB1-208ENST00000532088 HDGFL1Q5TGJ6 251 aa16.07■□□□□ 0.16
COPB1-208ENST00000532088 L3MBTL3Q96JM7 780 aaPredicted RBP16.07■□□□□ 0.16
COPB1-208ENST00000532088 TMEM121BQ9BXQ6 578 aaPredicted RBP16.07■□□□□ 0.16
COPB1-208ENST00000532088 LRRC4BQ9NT99 713 aa16.07■□□□□ 0.16
COPB1-208ENST00000532088 PRAMEF22A3QJZ6 481 aa16.06■□□□□ 0.16
COPB1-208ENST00000532088 ELL2O00472 640 aaPredicted RBP16.06■□□□□ 0.16
COPB1-208ENST00000532088 BRPF1P55201 1214 aaPredicted RBP16.06■□□□□ 0.16
COPB1-208ENST00000532088 EN1Q05925 392 aaPredicted RBP16.06■□□□□ 0.16
COPB1-208ENST00000532088 BOLA1Q9Y3E2 137 aa16.06■□□□□ 0.16
COPB1-208ENST00000532088 EZH2Q15910 746 aaKnown RBP16.05■□□□□ 0.16
COPB1-208ENST00000532088 MICALL2Q8IY33 904 aa16.05■□□□□ 0.16
COPB1-208ENST00000532088 LINC00116Q8NCU8 138 aa16.05■□□□□ 0.16
COPB1-208ENST00000532088 DDX21Q9NR30 783 aaKnown RBP eCLIP16.05■□□□□ 0.16
COPB1-208ENST00000532088 DBF4Q9UBU7 674 aaPredicted RBP16.05■□□□□ 0.16
COPB1-208ENST00000532088 CACNA1FO60840 1977 aa16.05■□□□□ 0.16
COPB1-208ENST00000532088 C4BP0C0L5 1744 aa16.05■□□□□ 0.16
COPB1-208ENST00000532088 EIF2S2P20042 333 aaKnown RBP16.04■□□□□ 0.16
COPB1-208ENST00000532088 CRKLP46109 303 aaKnown RBP16.04■□□□□ 0.16
COPB1-208ENST00000532088 STK31Q9BXU1 1019 aa16.04■□□□□ 0.16
COPB1-208ENST00000532088 CCDC87Q9NVE4 849 aa16.04■□□□□ 0.16
COPB1-208ENST00000532088 IL6STP40189 918 aaPredicted RBP16.03■□□□□ 0.16
COPB1-208ENST00000532088 RARSP54136 660 aaKnown RBP16.03■□□□□ 0.16
COPB1-208ENST00000532088 INTS5Q6P9B9 1019 aaKnown RBP16.03■□□□□ 0.16
COPB1-208ENST00000532088 DEFB132Q7Z7B7 95 aa16.03■□□□□ 0.16
COPB1-208ENST00000532088 HYPKQ9NX55 129 aa16.03■□□□□ 0.16
COPB1-208ENST00000532088 NUP188Q5SRE5 1749 aa16.02■□□□□ 0.16
COPB1-208ENST00000532088 PDIA6Q15084 440 aa16.02■□□□□ 0.16
COPB1-208ENST00000532088 RPS6KA4O75676 772 aa16.01■□□□□ 0.15
COPB1-208ENST00000532088 A1BGP04217 495 aa16.01■□□□□ 0.15
COPB1-208ENST00000532088 LRP10Q7Z4F1 713 aa16.01■□□□□ 0.15
COPB1-208ENST00000532088 CHPF2Q9P2E5 772 aa16.01■□□□□ 0.15
COPB1-208ENST00000532088 RCAN3Q9UKA8 241 aa16.01■□□□□ 0.15
COPB1-208ENST00000532088 ZBTB1Q9Y2K1 713 aa16.01■□□□□ 0.15
COPB1-208ENST00000532088 MYH14Q7Z406 1995 aaKnown RBP16■□□□□ 0.15
COPB1-208ENST00000532088 NBPF26B4DH59 902 aa16■□□□□ 0.15
COPB1-208ENST00000532088 EIF5P55010 431 aaKnown RBP16■□□□□ 0.15
COPB1-208ENST00000532088 NBPF14Q5TI25 921 aa16■□□□□ 0.15
COPB1-208ENST00000532088 NBPF10Q6P3W6 841 aaKnown RBP16■□□□□ 0.15
COPB1-208ENST00000532088 NBPF15Q8N660 670 aa16■□□□□ 0.15
COPB1-208ENST00000532088 SSH1Q8WYL5 1049 aa16■□□□□ 0.15
COPB1-208ENST00000532088 AK7Q96M32 723 aa16■□□□□ 0.15
COPB1-208ENST00000532088 QSER1Q2KHR3 1735 aa15.99■□□□□ 0.15
COPB1-208ENST00000532088 A0A087WZG4 1122 aa15.99■□□□□ 0.15
COPB1-208ENST00000532088 G3V3G9 751 aa15.99■□□□□ 0.15
COPB1-208ENST00000532088 CENPBP07199 599 aaPredicted RBP15.99■□□□□ 0.15
COPB1-208ENST00000532088 SSFA2P28290 1259 aa15.99■□□□□ 0.15
COPB1-208ENST00000532088 KCNQ4P56696 695 aa15.99■□□□□ 0.15
COPB1-208ENST00000532088 MRPL50Q8N5N7 158 aaKnown RBP15.99■□□□□ 0.15
COPB1-208ENST00000532088 SMC4Q9NTJ3 1288 aa15.99■□□□□ 0.15
COPB1-208ENST00000532088 RTCBQ9Y3I0 505 aaKnown RBP15.99■□□□□ 0.15
COPB1-208ENST00000532088 KIF16BQ96L93 1317 aa15.98■□□□□ 0.15
COPB1-208ENST00000532088 UBR3Q6ZT12 1888 aa15.98■□□□□ 0.15
COPB1-208ENST00000532088 FLAD1Q8NFF5 587 aa15.98■□□□□ 0.15
COPB1-208ENST00000532088 NECTIN2Q92692 538 aa15.98■□□□□ 0.15
COPB1-208ENST00000532088 PTPRCP08575 1304 aa15.97■□□□□ 0.15
COPB1-208ENST00000532088 GNPATO15228 680 aa15.97■□□□□ 0.15
COPB1-208ENST00000532088 CANXP27824 592 aaKnown RBP15.97■□□□□ 0.15
COPB1-208ENST00000532088 PROSER3Q2NL68 480 aa15.97■□□□□ 0.15
COPB1-208ENST00000532088 NPM2Q86SE8 214 aaKnown RBP15.97■□□□□ 0.15
COPB1-208ENST00000532088 ARHGAP45Q92619 1136 aa15.97■□□□□ 0.15
COPB1-208ENST00000532088 STK32BQ9NY57 414 aa15.97■□□□□ 0.15
COPB1-208ENST00000532088 COL15A1P39059 1388 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms