RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 NBPF1Q3BBV0 1214 aa7.73□□□□□ -1.17
USP48-211ENST00000526044 C1orf216Q8TAB5 229 aa7.73□□□□□ -1.17
USP48-211ENST00000526044 L3MBTL2Q969R5 705 aa7.73□□□□□ -1.17
USP48-211ENST00000526044 ZNF837Q96EG3 531 aaPredicted RBP7.73□□□□□ -1.17
USP48-211ENST00000526044 ZMIZ1Q9ULJ6 1067 aa7.73□□□□□ -1.17
USP48-211ENST00000526044 WIZO95785 1651 aa7.73□□□□□ -1.17
USP48-211ENST00000526044 SERTM1A2A2V5 107 aa7.72□□□□□ -1.17
USP48-211ENST00000526044 GPR25O00155 361 aa7.72□□□□□ -1.17
USP48-211ENST00000526044 PPP1R12BO60237 982 aaPredicted RBP7.72□□□□□ -1.17
USP48-211ENST00000526044 CSB-PGBD3P0DP91 1061 aa7.72□□□□□ -1.17
USP48-211ENST00000526044 PGBD3Q8N328 593 aa7.72□□□□□ -1.17
USP48-211ENST00000526044 SCG3Q8WXD2 468 aaKnown RBP7.72□□□□□ -1.17
USP48-211ENST00000526044 GPAMQ9HCL2 828 aa7.72□□□□□ -1.17
USP48-211ENST00000526044 LRRC4BQ9NT99 713 aa7.72□□□□□ -1.17
USP48-211ENST00000526044 ZNF232Q9UNY5 417 aa7.72□□□□□ -1.17
USP48-211ENST00000526044 PARP3Q9Y6F1 533 aa7.72□□□□□ -1.17
USP48-211ENST00000526044 ATAD2BQ9ULI0 1458 aa7.72□□□□□ -1.17
USP48-211ENST00000526044 SMARCA2P51531 1590 aa7.71□□□□□ -1.17
USP48-211ENST00000526044 C21orf2O43822 256 aa7.71□□□□□ -1.18
USP48-211ENST00000526044 SWI5Q1ZZU3 235 aa7.71□□□□□ -1.18
USP48-211ENST00000526044 ZDHHC1Q8WTX9 485 aa7.71□□□□□ -1.18
USP48-211ENST00000526044 STK32AQ8WU08 396 aa7.71□□□□□ -1.18
USP48-211ENST00000526044 ZDHHC3Q9NYG2 299 aa7.71□□□□□ -1.18
USP48-211ENST00000526044 NCAPD3P42695 1498 aa7.7□□□□□ -1.18
USP48-211ENST00000526044 LGR5O75473 907 aa7.7□□□□□ -1.18
USP48-211ENST00000526044 PROCP04070 461 aa7.7□□□□□ -1.18
USP48-211ENST00000526044 TATP17735 454 aaPredicted RBP7.7□□□□□ -1.18
USP48-211ENST00000526044 MX2P20592 715 aa7.7□□□□□ -1.18
USP48-211ENST00000526044 IGFBP4P22692 258 aa7.7□□□□□ -1.18
USP48-211ENST00000526044 DBN1Q16643 649 aa7.7□□□□□ -1.18
USP48-211ENST00000526044 TMEM164Q5U3C3 297 aa7.7□□□□□ -1.18
USP48-211ENST00000526044 STAG2Q8N3U4 1231 aa7.7□□□□□ -1.18
USP48-211ENST00000526044 CHMP7Q8WUX9 453 aaPredicted RBP7.7□□□□□ -1.18
USP48-211ENST00000526044 PEG3Q9GZU2 1588 aa7.7□□□□□ -1.18
USP48-211ENST00000526044 EML1O00423 815 aa7.69□□□□□ -1.18
USP48-211ENST00000526044 WEE1P30291 646 aa7.69□□□□□ -1.18
USP48-211ENST00000526044 FAM69CQ0P6D2 419 aa7.69□□□□□ -1.18
USP48-211ENST00000526044 LBRQ14739 615 aaKnown RBP7.69□□□□□ -1.18
USP48-211ENST00000526044 GTPBP3Q969Y2 492 aaKnown RBP7.69□□□□□ -1.18
USP48-211ENST00000526044 ACDQ96AP0 544 aa7.69□□□□□ -1.18
USP48-211ENST00000526044 NUCKS1Q9H1E3 243 aaKnown RBP7.69□□□□□ -1.18
USP48-211ENST00000526044 RUBCNLQ9H714 662 aa7.69□□□□□ -1.18
USP48-211ENST00000526044 ATP4AP20648 1035 aa7.68□□□□□ -1.18
USP48-211ENST00000526044 TXLNAP40222 546 aa7.68□□□□□ -1.18
USP48-211ENST00000526044 HIRAP54198 1017 aaPredicted RBP7.68□□□□□ -1.18
USP48-211ENST00000526044 ARSJQ5FYB0 599 aaPredicted RBP7.68□□□□□ -1.18
USP48-211ENST00000526044 EFHC2Q5JST6 749 aa7.68□□□□□ -1.18
USP48-211ENST00000526044 POTEAQ6S8J7 498 aa7.68□□□□□ -1.18
USP48-211ENST00000526044 ALYREFQ86V81 257 aaKnown RBP7.68□□□□□ -1.18
USP48-211ENST00000526044 C2orf49Q9BVC5 232 aaPredicted RBP7.68□□□□□ -1.18
USP48-211ENST00000526044 CRISPLD1Q9H336 500 aa7.68□□□□□ -1.18
USP48-211ENST00000526044 HCN4Q9Y3Q4 1203 aa7.68□□□□□ -1.18
USP48-211ENST00000526044 SH3PXD2AQ5TCZ1 1133 aa7.67□□□□□ -1.18
USP48-211ENST00000526044 C1orf53Q5VUE5 145 aa7.67□□□□□ -1.18
USP48-211ENST00000526044 BICDL1Q6ZP65 573 aa7.67□□□□□ -1.18
USP48-211ENST00000526044 MKL2Q9ULH7 1088 aa7.67□□□□□ -1.18
USP48-211ENST00000526044 BAZ1BQ9UIG0 1483 aaKnown RBP7.67□□□□□ -1.18
USP48-211ENST00000526044 OIP5O43482 229 aa7.66□□□□□ -1.18
USP48-211ENST00000526044 FOXO3O43524 673 aa7.66□□□□□ -1.18
USP48-211ENST00000526044 ITGB2P05107 769 aa7.66□□□□□ -1.18
USP48-211ENST00000526044 MAP2K3P46734 347 aa7.66□□□□□ -1.18
USP48-211ENST00000526044 NLRP8Q86W28 1048 aa7.66□□□□□ -1.18
USP48-211ENST00000526044 PRIMPOLQ96LW4 560 aa7.66□□□□□ -1.18
USP48-211ENST00000526044 ZIC5Q96T25 663 aa7.66□□□□□ -1.18
USP48-211ENST00000526044 GPC6Q9Y625 555 aaPredicted RBP7.66□□□□□ -1.18
USP48-211ENST00000526044 A0A1W2PNR3 127 aa7.65□□□□□ -1.18
USP48-211ENST00000526044 PRMT3O60678 531 aa7.65□□□□□ -1.18
USP48-211ENST00000526044 BAG6P46379 1132 aa7.65□□□□□ -1.18
USP48-211ENST00000526044 CLP1Q92989 425 aaKnown RBP7.65□□□□□ -1.18
USP48-211ENST00000526044 VTI1AQ96AJ9 217 aa7.65□□□□□ -1.18
USP48-211ENST00000526044 PHACTR1Q9C0D0 580 aa7.65□□□□□ -1.18
USP48-211ENST00000526044 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.65□□□□□ -1.189e-7■■■■■ 30.8
USP48-211ENST00000526044 THBS1P07996 1170 aa7.64□□□□□ -1.19
USP48-211ENST00000526044 FIGNL1Q6PIW4 674 aa7.64□□□□□ -1.19
USP48-211ENST00000526044 ALDH16A1Q8IZ83 802 aa7.64□□□□□ -1.19
USP48-211ENST00000526044 C7orf43Q8WVR3 580 aa7.64□□□□□ -1.19
USP48-211ENST00000526044 OXCT2Q9BYC2 517 aaPredicted RBP7.64□□□□□ -1.19
USP48-211ENST00000526044 RRAGCQ9HB90 399 aa7.64□□□□□ -1.19
USP48-211ENST00000526044 NEUROD4Q9HD90 331 aa7.64□□□□□ -1.19
USP48-211ENST00000526044 GJA3Q9Y6H8 435 aa7.64□□□□□ -1.19
USP48-211ENST00000526044 HMGXB3Q12766 1538 aa7.63□□□□□ -1.19
USP48-211ENST00000526044 PIK3R2O00459 728 aa7.63□□□□□ -1.19
USP48-211ENST00000526044 OCLNQ16625 522 aa7.63□□□□□ -1.19
USP48-211ENST00000526044 Q8N3U1 123 aa7.63□□□□□ -1.19
USP48-211ENST00000526044 RHPN1Q8TCX5 695 aa7.63□□□□□ -1.19
USP48-211ENST00000526044 CFHR5Q9BXR6 569 aa7.63□□□□□ -1.19
USP48-211ENST00000526044 ZCCHC2Q9C0B9 1178 aaKnown RBP7.63□□□□□ -1.19
USP48-211ENST00000526044 PHF24Q9UPV7 400 aa7.63□□□□□ -1.19
USP48-211ENST00000526044 TOP2AP11388 1531 aaKnown RBP7.62□□□□□ -1.19
USP48-211ENST00000526044 TMEM88BA6NKF7 163 aa7.62□□□□□ -1.19
USP48-211ENST00000526044 UBAP2LQ14157 1087 aaKnown RBP7.62□□□□□ -1.19
USP48-211ENST00000526044 NGLY1Q96IV0 654 aa7.62□□□□□ -1.19
USP48-211ENST00000526044 CXXC1Q9P0U4 656 aaPredicted RBP7.62□□□□□ -1.19
USP48-211ENST00000526044 ANKIB1Q9P2G1 1089 aa7.62□□□□□ -1.19
USP48-211ENST00000526044 PCDHGC4Q9Y5F7 938 aa7.62□□□□□ -1.19
USP48-211ENST00000526044 FURINP09958 794 aa7.61□□□□□ -1.19
USP48-211ENST00000526044 FKBP5Q13451 457 aaPredicted RBP7.61□□□□□ -1.19
USP48-211ENST00000526044 HIF1AQ16665 826 aa7.61□□□□□ -1.19
USP48-211ENST00000526044 KRBA1A5PL33 1030 aa7.6□□□□□ -1.19
USP48-211ENST00000526044 ATXN7O15265 892 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms