RNA–Protein interactions for RNA: ENST00000522556.1

CLK4-211, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,249 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-211ENST00000522556 CCDC27Q2M243 656 aa23.27■■□□□ 1.32
CLK4-211ENST00000522556 UTRNP46939 3433 aa23.27■■□□□ 1.32
CLK4-211ENST00000522556 KCNA3P22001 575 aa23.26■■□□□ 1.31
CLK4-211ENST00000522556 GNAI1P63096 354 aa23.26■■□□□ 1.31
CLK4-211ENST00000522556 DUSP27Q5VZP5 1158 aa23.26■■□□□ 1.31
CLK4-211ENST00000522556 DLEC1Q9Y238 1755 aa23.26■■□□□ 1.31
CLK4-211ENST00000522556 ERBB4Q15303 1308 aa23.26■■□□□ 1.31
CLK4-211ENST00000522556 CHD4Q14839 1912 aa23.25■■□□□ 1.31
CLK4-211ENST00000522556 DCAF8L1A6NGE4 600 aa23.25■■□□□ 1.31
CLK4-211ENST00000522556 ELL2O00472 640 aaPredicted RBP23.25■■□□□ 1.31
CLK4-211ENST00000522556 C8orf58Q8NAV2 365 aa23.25■■□□□ 1.31
CLK4-211ENST00000522556 ZBTB3Q9H5J0 574 aa23.25■■□□□ 1.31
CLK4-211ENST00000522556 CHPF2Q9P2E5 772 aa23.25■■□□□ 1.31
CLK4-211ENST00000522556 PRR5LQ6MZQ0 368 aa23.24■■□□□ 1.31
CLK4-211ENST00000522556 MAP3K15Q6ZN16 1313 aa23.24■■□□□ 1.31
CLK4-211ENST00000522556 TGFB2P61812 414 aa23.23■■□□□ 1.31
CLK4-211ENST00000522556 CALD1Q05682 793 aaKnown RBP23.23■■□□□ 1.31
CLK4-211ENST00000522556 HDGFL1Q5TGJ6 251 aa23.23■■□□□ 1.31
CLK4-211ENST00000522556 TSPYL6Q8N831 410 aa23.23■■□□□ 1.31
CLK4-211ENST00000522556 SETDB2Q96T68 719 aa23.22■■□□□ 1.31
CLK4-211ENST00000522556 TNRC6CQ9HCJ0 1690 aaKnown RBP23.22■■□□□ 1.31
CLK4-211ENST00000522556 ANKRD36CQ5JPF3 1778 aa23.22■■□□□ 1.31
CLK4-211ENST00000522556 FAM177BA6PVY3 158 aa23.21■■□□□ 1.31
CLK4-211ENST00000522556 CLEC4GQ6UXB4 293 aa23.21■■□□□ 1.31
CLK4-211ENST00000522556 SPINK5Q9NQ38 1064 aaPredicted RBP23.21■■□□□ 1.31
CLK4-211ENST00000522556 NIP7Q9Y221 180 aaKnown RBP eCLIP23.21■■□□□ 1.31
CLK4-211ENST00000522556 ARFGEF1Q9Y6D6 1849 aa23.2■■□□□ 1.3
CLK4-211ENST00000522556 UBN2Q6ZU65 1347 aa23.2■■□□□ 1.3
CLK4-211ENST00000522556 HOXB7P09629 217 aa23.2■■□□□ 1.3
CLK4-211ENST00000522556 KIF6Q6ZMV9 814 aa23.2■■□□□ 1.3
CLK4-211ENST00000522556 XAGE3Q8WTP9 111 aa23.2■■□□□ 1.3
CLK4-211ENST00000522556 ZNF652Q9Y2D9 606 aa23.2■■□□□ 1.3
CLK4-211ENST00000522556 ATP10DQ9P241 1426 aa23.19■■□□□ 1.3
CLK4-211ENST00000522556 AIMP1Q12904 312 aaKnown RBP23.19■■□□□ 1.3
CLK4-211ENST00000522556 COPS6Q7L5N1 327 aa23.19■■□□□ 1.3
CLK4-211ENST00000522556 DDX21Q9NR30 783 aaKnown RBP eCLIP23.19■■□□□ 1.3
CLK4-211ENST00000522556 CACNA1SQ13698 1873 aa23.19■■□□□ 1.3
CLK4-211ENST00000522556 FANCIQ9NVI1 1328 aa23.18■■□□□ 1.3
CLK4-211ENST00000522556 ERVV-1B6SEH8 477 aa23.18■■□□□ 1.3
CLK4-211ENST00000522556 GPTP24298 496 aa23.18■■□□□ 1.3
CLK4-211ENST00000522556 CNBD1Q8NA66 436 aa23.18■■□□□ 1.3
CLK4-211ENST00000522556 BCS1LQ9Y276 419 aa23.18■■□□□ 1.3
CLK4-211ENST00000522556 ARFGEF2Q9Y6D5 1785 aa23.17■■□□□ 1.3
CLK4-211ENST00000522556 YY1P25490 414 aa23.17■■□□□ 1.3
CLK4-211ENST00000522556 NCBP3Q53F19 620 aaKnown RBP23.17■■□□□ 1.3
CLK4-211ENST00000522556 DIEXFQ68CQ4 756 aaKnown RBP23.17■■□□□ 1.3
CLK4-211ENST00000522556 ABCC12Q96J65 1359 aa23.16■■□□□ 1.3
CLK4-211ENST00000522556 IL16Q14005 1332 aa23.16■■□□□ 1.3
CLK4-211ENST00000522556 NBPF5PQ86XG9 351 aaPredicted RBP23.16■■□□□ 1.3
CLK4-211ENST00000522556 MIER1Q8N108 512 aa23.16■■□□□ 1.3
CLK4-211ENST00000522556 CCER2I3L3R5 266 aa23.15■■□□□ 1.3
CLK4-211ENST00000522556 TCERG1O14776 1098 aaKnown RBP23.15■■□□□ 1.3
CLK4-211ENST00000522556 RGL2O15211 777 aa23.15■■□□□ 1.3
CLK4-211ENST00000522556 C2CD5Q86YS7 1000 aa23.15■■□□□ 1.3
CLK4-211ENST00000522556 ZNF428Q96B54 188 aa23.15■■□□□ 1.3
CLK4-211ENST00000522556 ZNF521Q96K83 1311 aa23.14■■□□□ 1.3
CLK4-211ENST00000522556 GIGYF2Q6Y7W6 1299 aaKnown RBP23.14■■□□□ 1.29
CLK4-211ENST00000522556 NPHP1O15259 732 aa23.13■■□□□ 1.29
CLK4-211ENST00000522556 GRIN3BO60391 1043 aa23.13■■□□□ 1.29
CLK4-211ENST00000522556 NUTM1Q86Y26 1132 aa23.13■■□□□ 1.29
CLK4-211ENST00000522556 WDR63Q8IWG1 891 aa23.13■■□□□ 1.29
CLK4-211ENST00000522556 ZNF34Q8IZ26 560 aa23.13■■□□□ 1.29
CLK4-211ENST00000522556 PHAXQ9H814 394 aaKnown RBP23.13■■□□□ 1.29
CLK4-211ENST00000522556 PIM2Q9P1W9 311 aa23.13■■□□□ 1.29
CLK4-211ENST00000522556 DBF4Q9UBU7 674 aaPredicted RBP23.13■■□□□ 1.29
CLK4-211ENST00000522556 SUSD4Q5VX71 490 aa23.12■■□□□ 1.29
CLK4-211ENST00000522556 BRIP1Q9BX63 1249 aa23.12■■□□□ 1.29
CLK4-211ENST00000522556 ST5P78524 1137 aa23.11■■□□□ 1.29
CLK4-211ENST00000522556 SLX4Q8IY92 1834 aa23.1■■□□□ 1.29
CLK4-211ENST00000522556 NTSR2O95665 410 aa23.09■■□□□ 1.29
CLK4-211ENST00000522556 TWISTNBQ3B726 338 aaPredicted RBP23.09■■□□□ 1.29
CLK4-211ENST00000522556 ERFEQ4G0M1 354 aa23.09■■□□□ 1.29
CLK4-211ENST00000522556 DALRD3Q5D0E6 543 aaKnown RBP23.09■■□□□ 1.29
CLK4-211ENST00000522556 H0YIN7 160 aa23.08■■□□□ 1.29
CLK4-211ENST00000522556 EXOSC9Q06265 439 aaKnown RBP23.08■■□□□ 1.29
CLK4-211ENST00000522556 HYPKQ9NX55 129 aa23.08■■□□□ 1.29
CLK4-211ENST00000522556 LAMB2P55268 1798 aa23.08■■□□□ 1.29
CLK4-211ENST00000522556 IBTKQ9P2D0 1353 aaPredicted RBP23.07■■□□□ 1.28
CLK4-211ENST00000522556 PDE6BP35913 854 aa23.07■■□□□ 1.28
CLK4-211ENST00000522556 TPTE2Q6XPS3 522 aa23.07■■□□□ 1.28
CLK4-211ENST00000522556 C3orf67Q6ZVT6 689 aa23.07■■□□□ 1.28
CLK4-211ENST00000522556 SRGNP10124 158 aa23.06■■□□□ 1.28
CLK4-211ENST00000522556 SYNE4Q8N205 404 aa23.06■■□□□ 1.28
CLK4-211ENST00000522556 PLBD2Q8NHP8 589 aa23.06■■□□□ 1.28
CLK4-211ENST00000522556 ZNF622Q969S3 477 aaKnown RBP eCLIP23.06■■□□□ 1.28
CLK4-211ENST00000522556 TCIRG1Q13488 830 aa23.05■■□□□ 1.28
CLK4-211ENST00000522556 CCDC30Q5VVM6 783 aa23.05■■□□□ 1.28
CLK4-211ENST00000522556 ANKRD13DQ6ZTN6 518 aa23.05■■□□□ 1.28
CLK4-211ENST00000522556 ARHGAP27Q6ZUM4 889 aa23.05■■□□□ 1.28
CLK4-211ENST00000522556 G2E3Q7L622 706 aa23.05■■□□□ 1.28
CLK4-211ENST00000522556 NLRP10Q86W26 655 aa23.05■■□□□ 1.28
CLK4-211ENST00000522556 DDX60Q8IY21 1712 aaKnown RBP23.05■■□□□ 1.28
CLK4-211ENST00000522556 ATP5J2-PTCD1G3V325 749 aa23.04■■□□□ 1.28
CLK4-211ENST00000522556 TTLL6Q8N841 843 aa23.04■■□□□ 1.28
CLK4-211ENST00000522556 ZNF219Q9P2Y4 722 aaPredicted RBP23.04■■□□□ 1.28
CLK4-211ENST00000522556 SBF1O95248 1867 aa23.03■■□□□ 1.28
CLK4-211ENST00000522556 KLRG2A4D1S0 409 aaPredicted RBP23.03■■□□□ 1.28
CLK4-211ENST00000522556 GTF2E1P29083 439 aaPredicted RBP23.03■■□□□ 1.28
CLK4-211ENST00000522556 SLC51AQ86UW1 340 aa23.03■■□□□ 1.28
CLK4-211ENST00000522556 NYXQ9GZU5 481 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms