RNA–Protein interactions for RNA: ENST00000519219.1

TRIM35-202, Transcript of tripartite motif containing 35, humanhuman

TSL 2

Gene TRIM35, Length 423 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-202ENST00000519219 DCTN1Q14203 1278 aa11.75□□□□□ -0.53
TRIM35-202ENST00000519219 ERFEQ4G0M1 354 aa11.75□□□□□ -0.53
TRIM35-202ENST00000519219 PRPF40BQ6NWY9 871 aaKnown RBP11.75□□□□□ -0.53
TRIM35-202ENST00000519219 OLFM4Q6UX06 510 aa11.75□□□□□ -0.53
TRIM35-202ENST00000519219 CNBD1Q8NA66 436 aa11.75□□□□□ -0.53
TRIM35-202ENST00000519219 TEX13AQ9BXU3 409 aaPredicted RBP11.75□□□□□ -0.53
TRIM35-202ENST00000519219 LAMB4A4D0S4 1761 aa11.74□□□□□ -0.53
TRIM35-202ENST00000519219 NBPF26B4DH59 902 aa11.74□□□□□ -0.53
TRIM35-202ENST00000519219 CAPN15O75808 1086 aa11.74□□□□□ -0.53
TRIM35-202ENST00000519219 DDNO94850 711 aaPredicted RBP11.74□□□□□ -0.53
TRIM35-202ENST00000519219 SRGNP10124 158 aa11.74□□□□□ -0.53
TRIM35-202ENST00000519219 NBPF10Q6P3W6 841 aaKnown RBP11.74□□□□□ -0.53
TRIM35-202ENST00000519219 NBPF15Q8N660 670 aa11.74□□□□□ -0.53
TRIM35-202ENST00000519219 SETDB2Q96T68 719 aa11.74□□□□□ -0.53
TRIM35-202ENST00000519219 NUP98P52948 1817 aa11.74□□□□□ -0.53
TRIM35-202ENST00000519219 HSPA1AP0DMV8 641 aaKnown RBP11.73□□□□□ -0.53
TRIM35-202ENST00000519219 HSPA1BP0DMV9 641 aaKnown RBP11.73□□□□□ -0.53
TRIM35-202ENST00000519219 STYK1Q6J9G0 422 aa11.73□□□□□ -0.53
TRIM35-202ENST00000519219 KDM3BQ7LBC6 1761 aa11.73□□□□□ -0.53
TRIM35-202ENST00000519219 TAOK3Q9H2K8 898 aa11.73□□□□□ -0.53
TRIM35-202ENST00000519219 LTBP3Q9NS15 1303 aa11.73□□□□□ -0.53
TRIM35-202ENST00000519219 FAM177BA6PVY3 158 aa11.72□□□□□ -0.53
TRIM35-202ENST00000519219 NPHP1O15259 732 aa11.72□□□□□ -0.53
TRIM35-202ENST00000519219 ST5P78524 1137 aa11.72□□□□□ -0.53
TRIM35-202ENST00000519219 SLC51AQ86UW1 340 aa11.72□□□□□ -0.53
TRIM35-202ENST00000519219 C7orf43Q8WVR3 580 aa11.72□□□□□ -0.53
TRIM35-202ENST00000519219 PCDH10Q9P2E7 1040 aa11.72□□□□□ -0.53
TRIM35-202ENST00000519219 SCN4AP35499 1836 aa11.72□□□□□ -0.53
TRIM35-202ENST00000519219 ZNF541Q9H0D2 1346 aa11.71□□□□□ -0.53
TRIM35-202ENST00000519219 U2AF1L5P0DN76 240 aaPredicted RBP11.71□□□□□ -0.53
TRIM35-202ENST00000519219 PPP2R1AP30153 589 aa11.71□□□□□ -0.53
TRIM35-202ENST00000519219 U2AF1Q01081 240 aaKnown RBP eCLIP11.71□□□□□ -0.53
TRIM35-202ENST00000519219 DPY19L2Q6NUT2 758 aa11.71□□□□□ -0.53
TRIM35-202ENST00000519219 NBPF5PQ86XG9 351 aaPredicted RBP11.71□□□□□ -0.53
TRIM35-202ENST00000519219 CNKSR1Q969H4 720 aa11.71□□□□□ -0.53
TRIM35-202ENST00000519219 MASTLQ96GX5 879 aa11.71□□□□□ -0.53
TRIM35-202ENST00000519219 MIS18AQ9NYP9 233 aa11.71□□□□□ -0.53
TRIM35-202ENST00000519219 COL4A5P29400 1685 aa11.71□□□□□ -0.54
TRIM35-202ENST00000519219 ADAMTSL1Q8N6G6 1762 aa11.7□□□□□ -0.54
TRIM35-202ENST00000519219 SNRPA1P09661 255 aaKnown RBP11.7□□□□□ -0.54
TRIM35-202ENST00000519219 HLFQ16534 295 aa11.7□□□□□ -0.54
TRIM35-202ENST00000519219 TNS4Q8IZW8 715 aa11.7□□□□□ -0.54
TRIM35-202ENST00000519219 ZNF277Q9NRM2 450 aaPredicted RBP11.7□□□□□ -0.54
TRIM35-202ENST00000519219 MKRN1Q9UHC7 482 aaKnown RBP11.7□□□□□ -0.54
TRIM35-202ENST00000519219 PDZRN3Q9UPQ7 1066 aa11.7□□□□□ -0.54
TRIM35-202ENST00000519219 ABCC12Q96J65 1359 aa11.69□□□□□ -0.54
TRIM35-202ENST00000519219 CHADLQ6NUI6 762 aa11.69□□□□□ -0.54
TRIM35-202ENST00000519219 CFAP53Q96M91 514 aa11.69□□□□□ -0.54
TRIM35-202ENST00000519219 NIP7Q9Y221 180 aaKnown RBP eCLIP11.69□□□□□ -0.54
TRIM35-202ENST00000519219 SNED1Q8TER0 1413 aa11.69□□□□□ -0.54
TRIM35-202ENST00000519219 KLRG2A4D1S0 409 aaPredicted RBP11.68□□□□□ -0.54
TRIM35-202ENST00000519219 CCDC93Q567U6 631 aa11.68□□□□□ -0.54
TRIM35-202ENST00000519219 NPM2Q86SE8 214 aaKnown RBP11.68□□□□□ -0.54
TRIM35-202ENST00000519219 LTBP1Q14766 1721 aa11.68□□□□□ -0.54
TRIM35-202ENST00000519219 NPR1P16066 1061 aa11.67□□□□□ -0.54
TRIM35-202ENST00000519219 FKBP4Q02790 459 aaKnown RBP eCLIP11.67□□□□□ -0.54
TRIM35-202ENST00000519219 CLEC4GQ6UXB4 293 aa11.67□□□□□ -0.54
TRIM35-202ENST00000519219 NGEFQ8N5V2 710 aa11.67□□□□□ -0.54
TRIM35-202ENST00000519219 RTF1Q92541 710 aaKnown RBP11.67□□□□□ -0.54
TRIM35-202ENST00000519219 L3MBTL3Q96JM7 780 aaPredicted RBP11.67□□□□□ -0.54
TRIM35-202ENST00000519219 THUMPD2Q9BTF0 503 aaKnown RBP11.67□□□□□ -0.54
TRIM35-202ENST00000519219 TAF1DQ9H5J8 278 aaPredicted RBP11.67□□□□□ -0.54
TRIM35-202ENST00000519219 NUDCQ9Y266 331 aa11.67□□□□□ -0.54
TRIM35-202ENST00000519219 PASKQ96RG2 1323 aa11.66□□□□□ -0.54
TRIM35-202ENST00000519219 TTLL7Q6ZT98 887 aa11.66□□□□□ -0.54
TRIM35-202ENST00000519219 NUTM1Q86Y26 1132 aa11.66□□□□□ -0.54
TRIM35-202ENST00000519219 CREBZFQ9NS37 354 aa11.66□□□□□ -0.54
TRIM35-202ENST00000519219 ZNF652Q9Y2D9 606 aa11.66□□□□□ -0.54
TRIM35-202ENST00000519219 TAF7Q15545 349 aaPredicted RBP11.65□□□□□ -0.54
TRIM35-202ENST00000519219 EAPPQ56P03 285 aaPredicted RBP11.65□□□□□ -0.54
TRIM35-202ENST00000519219 SOGA3Q5TF21 947 aa11.65□□□□□ -0.54
TRIM35-202ENST00000519219 TPTE2Q6XPS3 522 aa11.65□□□□□ -0.54
TRIM35-202ENST00000519219 CNTNAP1P78357 1384 aa11.65□□□□□ -0.55
TRIM35-202ENST00000519219 LAMB2P55268 1798 aa11.64□□□□□ -0.55
TRIM35-202ENST00000519219 RNF123Q5XPI4 1314 aa11.64□□□□□ -0.55
TRIM35-202ENST00000519219 UBN2Q6ZU65 1347 aa11.64□□□□□ -0.55
TRIM35-202ENST00000519219 TAF1P21675 1872 aa11.64□□□□□ -0.55
TRIM35-202ENST00000519219 FOXN1O15353 648 aa11.64□□□□□ -0.55
TRIM35-202ENST00000519219 ITGBL1O95965 494 aaPredicted RBP11.64□□□□□ -0.55
TRIM35-202ENST00000519219 C3orf67Q6ZVT6 689 aa11.64□□□□□ -0.55
TRIM35-202ENST00000519219 LDHDQ86WU2 507 aa11.64□□□□□ -0.55
TRIM35-202ENST00000519219 SYNE4Q8N205 404 aa11.64□□□□□ -0.55
TRIM35-202ENST00000519219 HTATSF1O43719 755 aaKnown RBP11.63□□□□□ -0.55
TRIM35-202ENST00000519219 GPTP24298 496 aa11.63□□□□□ -0.55
TRIM35-202ENST00000519219 IARSP41252 1262 aaKnown RBP11.63□□□□□ -0.55
TRIM35-202ENST00000519219 PLEKHF1Q96S99 279 aa11.63□□□□□ -0.55
TRIM35-202ENST00000519219 RRP7AQ9Y3A4 280 aaKnown RBP11.63□□□□□ -0.55
TRIM35-202ENST00000519219 MAP3K15Q6ZN16 1313 aa11.62□□□□□ -0.55
TRIM35-202ENST00000519219 IQCA1LA6NCM1 817 aa11.62□□□□□ -0.55
TRIM35-202ENST00000519219 FZD9O00144 591 aa11.62□□□□□ -0.55
TRIM35-202ENST00000519219 MYL6BP14649 208 aa11.62□□□□□ -0.55
TRIM35-202ENST00000519219 EPHX2P34913 555 aa11.62□□□□□ -0.55
TRIM35-202ENST00000519219 VEGFBP49765 207 aa11.62□□□□□ -0.55
TRIM35-202ENST00000519219 EIF4A1P60842 406 aaKnown RBP11.62□□□□□ -0.55
TRIM35-202ENST00000519219 FMR1Q06787 632 aaKnown RBP eCLIP11.62□□□□□ -0.55
TRIM35-202ENST00000519219 CRY2Q49AN0 593 aa11.62□□□□□ -0.55
TRIM35-202ENST00000519219 SUSD4Q5VX71 490 aa11.62□□□□□ -0.55
TRIM35-202ENST00000519219 MAP1SQ66K74 1059 aaPredicted RBP11.62□□□□□ -0.55
TRIM35-202ENST00000519219 ZBTB3Q9H5J0 574 aa11.62□□□□□ -0.55
TRIM35-202ENST00000519219 HACL1Q9UJ83 578 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms