RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 C2CD5Q86YS7 1000 aa38.89■■■■□ 3.82
SYNPO-203ENST00000518872 COL11A2P13942 1736 aaPredicted RBP38.88■■■■□ 3.81
SYNPO-203ENST00000518872 ERVV-1B6SEH8 477 aa38.87■■■■□ 3.81
SYNPO-203ENST00000518872 TTLL6Q8N841 843 aa38.86■■■■□ 3.81
SYNPO-203ENST00000518872 SBF1O95248 1867 aa38.85■■■■□ 3.81
SYNPO-203ENST00000518872 ST5P78524 1137 aa38.84■■■■□ 3.81
SYNPO-203ENST00000518872 HLFQ16534 295 aa38.83■■■■□ 3.81
SYNPO-203ENST00000518872 NIP7Q9Y221 180 aaKnown RBP eCLIP38.83■■■■□ 3.81
SYNPO-203ENST00000518872 MAP3K15Q6ZN16 1313 aa38.83■■■■□ 3.81
SYNPO-203ENST00000518872 NBPF5PQ86XG9 351 aaPredicted RBP38.82■■■■□ 3.8
SYNPO-203ENST00000518872 LRP10Q7Z4F1 713 aa38.81■■■■□ 3.8
SYNPO-203ENST00000518872 KIF6Q6ZMV9 814 aa38.8■■■■□ 3.8
SYNPO-203ENST00000518872 APAF1O14727 1248 aa38.79■■■■□ 3.8
SYNPO-203ENST00000518872 NPHP1O15259 732 aa38.79■■■■□ 3.8
SYNPO-203ENST00000518872 MYL6BP14649 208 aa38.79■■■■□ 3.8
SYNPO-203ENST00000518872 PDIA6Q15084 440 aa38.79■■■■□ 3.8
SYNPO-203ENST00000518872 TPTE2Q6XPS3 522 aa38.79■■■■□ 3.8
SYNPO-203ENST00000518872 TTLL7Q6ZT98 887 aa38.79■■■■□ 3.8
SYNPO-203ENST00000518872 CFAP44Q96MT7 982 aa38.79■■■■□ 3.8
SYNPO-203ENST00000518872 GPBP1L1Q9HC44 474 aaPredicted RBP38.79■■■■□ 3.8
SYNPO-203ENST00000518872 ARFGEF2Q9Y6D5 1785 aa38.79■■■■□ 3.8
SYNPO-203ENST00000518872 CCDC24Q8N4L8 307 aa38.78■■■■□ 3.8
SYNPO-203ENST00000518872 NGEFQ8N5V2 710 aa38.77■■■■□ 3.8
SYNPO-203ENST00000518872 KLRG2A4D1S0 409 aaPredicted RBP38.75■■■■□ 3.79
SYNPO-203ENST00000518872 HOXB7P09629 217 aa38.75■■■■□ 3.79
SYNPO-203ENST00000518872 EIF2S2P20042 333 aaKnown RBP38.75■■■■□ 3.79
SYNPO-203ENST00000518872 C1QTNF8P60827 252 aa38.75■■■■□ 3.79
SYNPO-203ENST00000518872 CCDC184Q52MB2 194 aa38.75■■■■□ 3.79
SYNPO-203ENST00000518872 SRGNP10124 158 aa38.74■■■■□ 3.79
SYNPO-203ENST00000518872 STYK1Q6J9G0 422 aa38.74■■■■□ 3.79
SYNPO-203ENST00000518872 IBTKQ9P2D0 1353 aaPredicted RBP38.73■■■■□ 3.79
SYNPO-203ENST00000518872 C9orf131Q5VYM1 1079 aa38.73■■■■□ 3.79
SYNPO-203ENST00000518872 ZNF853P0CG23 659 aa38.72■■■■□ 3.79
SYNPO-203ENST00000518872 ZNF622Q969S3 477 aaKnown RBP eCLIP38.72■■■■□ 3.79
SYNPO-203ENST00000518872 LAS1LQ9Y4W2 734 aaKnown RBP38.72■■■■□ 3.79
SYNPO-203ENST00000518872 ANP32CO43423 234 aa38.71■■■■□ 3.79
SYNPO-203ENST00000518872 CALD1Q05682 793 aaKnown RBP38.71■■■■□ 3.79
SYNPO-203ENST00000518872 GIGYF2Q6Y7W6 1299 aaKnown RBP38.71■■■■□ 3.79
SYNPO-203ENST00000518872 CNKSR1Q969H4 720 aa38.71■■■■□ 3.79
SYNPO-203ENST00000518872 MASTLQ96GX5 879 aa38.71■■■■□ 3.79
SYNPO-203ENST00000518872 FER1L6Q2WGJ9 1857 aa38.71■■■■□ 3.79
SYNPO-203ENST00000518872 NYXQ9GZU5 481 aa38.7■■■■□ 3.79
SYNPO-203ENST00000518872 CACNA1SQ13698 1873 aa38.7■■■■□ 3.79
SYNPO-203ENST00000518872 SLX4Q8IY92 1834 aa38.7■■■■□ 3.79
SYNPO-203ENST00000518872 KRT24Q2M2I5 525 aa38.69■■■■□ 3.78
SYNPO-203ENST00000518872 PROSER3Q2NL68 480 aa38.69■■■■□ 3.78
SYNPO-203ENST00000518872 ZBTB3Q9H5J0 574 aa38.69■■■■□ 3.78
SYNPO-203ENST00000518872 ZNF34Q8IZ26 560 aa38.68■■■■□ 3.78
SYNPO-203ENST00000518872 DDX21Q9NR30 783 aaKnown RBP eCLIP38.68■■■■□ 3.78
SYNPO-203ENST00000518872 IFT57Q9NWB7 429 aa38.68■■■■□ 3.78
SYNPO-203ENST00000518872 CCDC88AQ3V6T2 1871 aa38.68■■■■□ 3.78
SYNPO-203ENST00000518872 RIC1Q4ADV7 1423 aa38.67■■■■□ 3.78
SYNPO-203ENST00000518872 ZNF526Q8TF50 670 aaPredicted RBP38.67■■■■□ 3.78
SYNPO-203ENST00000518872 ZC3H4Q9UPT8 1303 aaKnown RBP38.66■■■■□ 3.78
SYNPO-203ENST00000518872 MBIPQ9NS73 344 aa38.66■■■■□ 3.78
SYNPO-203ENST00000518872 RNF181Q9P0P0 153 aa38.66■■■■□ 3.78
SYNPO-203ENST00000518872 ANKRD36CQ5JPF3 1778 aa38.66■■■■□ 3.78
SYNPO-203ENST00000518872 UBN2Q6ZU65 1347 aa38.65■■■■□ 3.78
SYNPO-203ENST00000518872 GNAI1P63096 354 aa38.65■■■■□ 3.78
SYNPO-203ENST00000518872 NPR1P16066 1061 aa38.64■■■■□ 3.78
SYNPO-203ENST00000518872 NFKBIEO00221 500 aa38.63■■■■□ 3.77
SYNPO-203ENST00000518872 ANXA1P04083 346 aa38.63■■■■□ 3.77
SYNPO-203ENST00000518872 LMNB1P20700 586 aa38.63■■■■□ 3.77
SYNPO-203ENST00000518872 RASSF7Q02833 373 aa38.63■■■■□ 3.77
SYNPO-203ENST00000518872 TNRC6CQ9HCJ0 1690 aaKnown RBP38.62■■■■□ 3.77
SYNPO-203ENST00000518872 FAM177BA6PVY3 158 aa38.62■■■■□ 3.77
SYNPO-203ENST00000518872 PRPF40BQ6NWY9 871 aaKnown RBP38.62■■■■□ 3.77
SYNPO-203ENST00000518872 DICER1Q9UPY3 1922 aaKnown RBP38.61■■■■□ 3.77
SYNPO-203ENST00000518872 GTF2E1P29083 439 aaPredicted RBP38.61■■■■□ 3.77
SYNPO-203ENST00000518872 NCBP3Q53F19 620 aaKnown RBP38.61■■■■□ 3.77
SYNPO-203ENST00000518872 PARP10Q53GL7 1025 aa38.61■■■■□ 3.77
SYNPO-203ENST00000518872 HDGFL1Q5TGJ6 251 aa38.61■■■■□ 3.77
SYNPO-203ENST00000518872 COPS6Q7L5N1 327 aa38.61■■■■□ 3.77
SYNPO-203ENST00000518872 MRS2Q9HD23 443 aa38.61■■■■□ 3.77
SYNPO-203ENST00000518872 ABCC12Q96J65 1359 aa38.6■■■■□ 3.77
SYNPO-203ENST00000518872 C21orf2O43822 256 aa38.6■■■■□ 3.77
SYNPO-203ENST00000518872 GPTP24298 496 aa38.6■■■■□ 3.77
SYNPO-203ENST00000518872 CCDC27Q2M243 656 aa38.6■■■■□ 3.77
SYNPO-203ENST00000518872 SOGA3Q5TF21 947 aa38.6■■■■□ 3.77
SYNPO-203ENST00000518872 NECTIN2Q92692 538 aa38.6■■■■□ 3.77
SYNPO-203ENST00000518872 LTBP3Q9NS15 1303 aa38.6■■■■□ 3.77
SYNPO-203ENST00000518872 KIF3CO14782 793 aa38.59■■■■□ 3.77
SYNPO-203ENST00000518872 PRELPP51888 382 aa38.59■■■■□ 3.77
SYNPO-203ENST00000518872 CRY2Q49AN0 593 aa38.59■■■■□ 3.77
SYNPO-203ENST00000518872 DUSP27Q5VZP5 1158 aa38.59■■■■□ 3.77
SYNPO-203ENST00000518872 XAGE3Q8WTP9 111 aa38.59■■■■□ 3.77
SYNPO-203ENST00000518872 SUSD4Q5VX71 490 aa38.58■■■■□ 3.77
SYNPO-203ENST00000518872 CHPF2Q9P2E5 772 aa38.58■■■■□ 3.77
SYNPO-203ENST00000518872 DBF4Q9UBU7 674 aaPredicted RBP38.58■■■■□ 3.77
SYNPO-203ENST00000518872 NTSR2O95665 410 aa38.57■■■■□ 3.76
SYNPO-203ENST00000518872 HSP90AB3PQ58FF7 597 aa38.57■■■■□ 3.76
SYNPO-203ENST00000518872 TIAM2Q8IVF5 1701 aa38.56■■■■□ 3.76
SYNPO-203ENST00000518872 PPP1R42Q7Z4L9 355 aa38.56■■■■□ 3.76
SYNPO-203ENST00000518872 NUTM1Q86Y26 1132 aa38.56■■■■□ 3.76
SYNPO-203ENST00000518872 C7orf43Q8WVR3 580 aa38.56■■■■□ 3.76
SYNPO-203ENST00000518872 ERFEQ4G0M1 354 aa38.55■■■■□ 3.76
SYNPO-203ENST00000518872 RNF123Q5XPI4 1314 aa38.55■■■■□ 3.76
SYNPO-203ENST00000518872 ALDH1B1P30837 517 aa38.53■■■■□ 3.76
SYNPO-203ENST00000518872 AIMP1Q12904 312 aaKnown RBP38.52■■■■□ 3.76
SYNPO-203ENST00000518872 KDM2BQ8NHM5 1336 aa38.52■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms