RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CNKSR1Q969H4 720 aa17.92■□□□□ 0.46
TCOF1-215ENST00000515516 MYL6BP14649 208 aa17.91■□□□□ 0.46
TCOF1-215ENST00000515516 PRKRIP1Q9H875 184 aaPredicted RBP17.91■□□□□ 0.46
TCOF1-215ENST00000515516 FAM177BA6PVY3 158 aa17.9■□□□□ 0.46
TCOF1-215ENST00000515516 ERVV-1B6SEH8 477 aa17.9■□□□□ 0.46
TCOF1-215ENST00000515516 STYK1Q6J9G0 422 aa17.9■□□□□ 0.46
TCOF1-215ENST00000515516 MASTLQ96GX5 879 aa17.9■□□□□ 0.46
TCOF1-215ENST00000515516 ZNF219Q9P2Y4 722 aaPredicted RBP17.9■□□□□ 0.46
TCOF1-215ENST00000515516 KDM2BQ8NHM5 1336 aa17.9■□□□□ 0.46
TCOF1-215ENST00000515516 NRXN2Q9P2S2 1712 aa17.89■□□□□ 0.46
TCOF1-215ENST00000515516 KIF3CO14782 793 aa17.89■□□□□ 0.45
TCOF1-215ENST00000515516 LMNB1P20700 586 aa17.89■□□□□ 0.45
TCOF1-215ENST00000515516 RASSF7Q02833 373 aa17.89■□□□□ 0.45
TCOF1-215ENST00000515516 HLFQ16534 295 aa17.89■□□□□ 0.45
TCOF1-215ENST00000515516 C16orf71Q8IYS4 520 aaPredicted RBP17.89■□□□□ 0.45
TCOF1-215ENST00000515516 ADAMTS8Q9UP79 889 aa17.89■□□□□ 0.45
TCOF1-215ENST00000515516 ERBB4Q15303 1308 aa17.89■□□□□ 0.45
TCOF1-215ENST00000515516 SCN7AQ01118 1682 aa17.89■□□□□ 0.45
TCOF1-215ENST00000515516 C21orf2O43822 256 aa17.88■□□□□ 0.45
TCOF1-215ENST00000515516 EIF2S2P20042 333 aaKnown RBP17.88■□□□□ 0.45
TCOF1-215ENST00000515516 NYXQ9GZU5 481 aa17.88■□□□□ 0.45
TCOF1-215ENST00000515516 LAS1LQ9Y4W2 734 aaKnown RBP17.88■□□□□ 0.45
TCOF1-215ENST00000515516 MAP3K15Q6ZN16 1313 aa17.88■□□□□ 0.45
TCOF1-215ENST00000515516 SRGNP10124 158 aa17.87■□□□□ 0.45
TCOF1-215ENST00000515516 SOGA3Q5TF21 947 aa17.87■□□□□ 0.45
TCOF1-215ENST00000515516 AFDNP55196 1824 aaKnown RBP17.86■□□□□ 0.45
TCOF1-215ENST00000515516 NPR1P16066 1061 aa17.86■□□□□ 0.45
TCOF1-215ENST00000515516 ZBTB3Q9H5J0 574 aa17.86■□□□□ 0.45
TCOF1-215ENST00000515516 NMRK2Q9NPI5 230 aa17.86■□□□□ 0.45
TCOF1-215ENST00000515516 ZC3H4Q9UPT8 1303 aaKnown RBP17.86■□□□□ 0.45
TCOF1-215ENST00000515516 BRCA1P38398 1863 aaKnown RBP17.86■□□□□ 0.45
TCOF1-215ENST00000515516 TOMM70O94826 608 aa17.85■□□□□ 0.45
TCOF1-215ENST00000515516 PRPF40BQ6NWY9 871 aaKnown RBP17.85■□□□□ 0.45
TCOF1-215ENST00000515516 TTLL7Q6ZT98 887 aa17.85■□□□□ 0.45
TCOF1-215ENST00000515516 ARFGEF1Q9Y6D6 1849 aa17.85■□□□□ 0.45
TCOF1-215ENST00000515516 NFKBIEO00221 500 aa17.84■□□□□ 0.45
TCOF1-215ENST00000515516 HSPA6P17066 643 aa17.84■□□□□ 0.45
TCOF1-215ENST00000515516 CHL1O00533 1208 aa17.83■□□□□ 0.44
TCOF1-215ENST00000515516 GPTP24298 496 aa17.83■□□□□ 0.44
TCOF1-215ENST00000515516 RRAGCQ9HB90 399 aa17.83■□□□□ 0.44
TCOF1-215ENST00000515516 TRIM35Q9UPQ4 493 aa17.83■□□□□ 0.44
TCOF1-215ENST00000515516 KDM3BQ7LBC6 1761 aa17.82■□□□□ 0.44
TCOF1-215ENST00000515516 KLRG2A4D1S0 409 aaPredicted RBP17.82■□□□□ 0.44
TCOF1-215ENST00000515516 ALDH1B1P30837 517 aa17.82■□□□□ 0.44
TCOF1-215ENST00000515516 DPY19L2Q6NUT2 758 aa17.82■□□□□ 0.44
TCOF1-215ENST00000515516 TAOK3Q9H2K8 898 aa17.82■□□□□ 0.44
TCOF1-215ENST00000515516 DLG5Q8TDM6 1919 aa17.82■□□□□ 0.44
TCOF1-215ENST00000515516 ERFEQ4G0M1 354 aa17.81■□□□□ 0.44
TCOF1-215ENST00000515516 GIGYF2Q6Y7W6 1299 aaKnown RBP17.81■□□□□ 0.44
TCOF1-215ENST00000515516 PPP1R42Q7Z4L9 355 aa17.81■□□□□ 0.44
TCOF1-215ENST00000515516 NECTIN2Q92692 538 aa17.81■□□□□ 0.44
TCOF1-215ENST00000515516 BCORQ6W2J9 1755 aa17.81■□□□□ 0.44
TCOF1-215ENST00000515516 GLTPD2A6NH11 291 aa17.8■□□□□ 0.44
TCOF1-215ENST00000515516 CALD1Q05682 793 aaKnown RBP17.8■□□□□ 0.44
TCOF1-215ENST00000515516 PDIA6Q15084 440 aa17.8■□□□□ 0.44
TCOF1-215ENST00000515516 PARP10Q53GL7 1025 aa17.8■□□□□ 0.44
TCOF1-215ENST00000515516 CCDC93Q567U6 631 aa17.8■□□□□ 0.44
TCOF1-215ENST00000515516 NUTM1Q86Y26 1132 aa17.8■□□□□ 0.44
TCOF1-215ENST00000515516 RBM46Q8TBY0 533 aaKnown RBP17.8■□□□□ 0.44
TCOF1-215ENST00000515516 LTBP3Q9NS15 1303 aa17.79■□□□□ 0.44
TCOF1-215ENST00000515516 ANXA1P04083 346 aa17.79■□□□□ 0.44
TCOF1-215ENST00000515516 PRELPP51888 382 aa17.79■□□□□ 0.44
TCOF1-215ENST00000515516 AIMP1Q12904 312 aaKnown RBP17.79■□□□□ 0.44
TCOF1-215ENST00000515516 SUSD4Q5VX71 490 aa17.79■□□□□ 0.44
TCOF1-215ENST00000515516 ZNF34Q8IZ26 560 aa17.79■□□□□ 0.44
TCOF1-215ENST00000515516 RPGRQ92834 1020 aaKnown RBP17.79■□□□□ 0.44
TCOF1-215ENST00000515516 CFAP44Q96MT7 982 aa17.79■□□□□ 0.44
TCOF1-215ENST00000515516 LAMB4A4D0S4 1761 aa17.79■□□□□ 0.44
TCOF1-215ENST00000515516 APAF1O14727 1248 aa17.78■□□□□ 0.44
TCOF1-215ENST00000515516 PROSER3Q2NL68 480 aa17.78■□□□□ 0.44
TCOF1-215ENST00000515516 HSP90AB3PQ58FF7 597 aa17.78■□□□□ 0.44
TCOF1-215ENST00000515516 COPS6Q7L5N1 327 aa17.78■□□□□ 0.44
TCOF1-215ENST00000515516 DDX21Q9NR30 783 aaKnown RBP eCLIP17.78■□□□□ 0.44
TCOF1-215ENST00000515516 DLEC1Q9Y238 1755 aa17.78■□□□□ 0.44
TCOF1-215ENST00000515516 UBN2Q6ZU65 1347 aa17.77■□□□□ 0.44
TCOF1-215ENST00000515516 HOXB7P09629 217 aa17.77■□□□□ 0.44
TCOF1-215ENST00000515516 VEGFAP15692 232 aaPredicted RBP17.77■□□□□ 0.44
TCOF1-215ENST00000515516 FSTL1Q12841 308 aa17.77■□□□□ 0.44
TCOF1-215ENST00000515516 HDGFL1Q5TGJ6 251 aa17.77■□□□□ 0.44
TCOF1-215ENST00000515516 RTKN2Q8IZC4 609 aa17.77■□□□□ 0.44
TCOF1-215ENST00000515516 XAGE3Q8WTP9 111 aa17.77■□□□□ 0.44
TCOF1-215ENST00000515516 C7orf43Q8WVR3 580 aa17.77■□□□□ 0.44
TCOF1-215ENST00000515516 UTP14AQ9BVJ6 771 aaKnown RBP17.77■□□□□ 0.44
TCOF1-215ENST00000515516 IBTKQ9P2D0 1353 aaPredicted RBP17.77■□□□□ 0.43
TCOF1-215ENST00000515516 ANKRD31Q8N7Z5 1873 aa17.76■□□□□ 0.43
TCOF1-215ENST00000515516 APLP1P51693 650 aa17.76■□□□□ 0.43
TCOF1-215ENST00000515516 KRT24Q2M2I5 525 aa17.76■□□□□ 0.43
TCOF1-215ENST00000515516 LRP10Q7Z4F1 713 aa17.76■□□□□ 0.43
TCOF1-215ENST00000515516 RBM17Q96I25 401 aaKnown RBP17.76■□□□□ 0.43
TCOF1-215ENST00000515516 FKBP4Q02790 459 aaKnown RBP eCLIP17.75■□□□□ 0.43
TCOF1-215ENST00000515516 CRY2Q49AN0 593 aa17.75■□□□□ 0.43
TCOF1-215ENST00000515516 NLRP3Q96P20 1036 aa17.75■□□□□ 0.43
TCOF1-215ENST00000515516 TMX4Q9H1E5 349 aaPredicted RBP17.75■□□□□ 0.43
TCOF1-215ENST00000515516 CHPF2Q9P2E5 772 aa17.75■□□□□ 0.43
TCOF1-215ENST00000515516 ZNF316A6NFI3 1004 aaPredicted RBP17.74■□□□□ 0.43
TCOF1-215ENST00000515516 NTSR2O95665 410 aa17.74■□□□□ 0.43
TCOF1-215ENST00000515516 GNAI1P63096 354 aa17.74■□□□□ 0.43
TCOF1-215ENST00000515516 DUSP27Q5VZP5 1158 aa17.74■□□□□ 0.43
TCOF1-215ENST00000515516 CC2D2BQ6DHV5 1058 aa17.74■□□□□ 0.43
TCOF1-215ENST00000515516 SMC1BQ8NDV3 1235 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms