RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MAP7D1Q3KQU3 841 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 STXBP4Q6ZWJ1 553 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 ADAMTS8Q9UP79 889 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 CTAGE9A4FU28 777 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 SKILP12757 684 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 RBBP5Q15291 538 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 KLHL10Q6JEL2 608 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 CNNM3Q8NE01 707 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 ZSCAN16Q9H4T2 348 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 RMND1Q9NWS8 449 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 POLA1P09884 1462 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 BMP15O95972 392 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 CTNNBL1Q8WYA6 563 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 ZNF622Q969S3 477 aaKnown RBP eCLIP12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 CWC25Q9NXE8 425 aaPredicted RBP12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 BANK1Q8NDB2 785 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 ZNF287Q9HBT7 754 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 GLRX3O76003 335 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-217ENST00000512946 ZNF365Q70YC5 407 aa12.87□□□□□ -0.35
LIMCH1-217ENST00000512946 BAG4O95429 457 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-217ENST00000512946 CCDC40Q4G0X9 1142 aa12.87□□□□□ -0.35
LIMCH1-217ENST00000512946 CAMK4Q16566 473 aa12.87□□□□□ -0.35
LIMCH1-217ENST00000512946 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.87□□□□□ -0.35
LIMCH1-217ENST00000512946 PLEKHH2Q8IVE3 1493 aa12.87□□□□□ -0.35
LIMCH1-217ENST00000512946 SSBP05455 408 aaKnown RBP eCLIP12.87□□□□□ -0.35
LIMCH1-217ENST00000512946 EXOSC9Q06265 439 aaKnown RBP12.87□□□□□ -0.35
LIMCH1-217ENST00000512946 IRX4P78413 519 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 TNIP1Q15025 636 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 TMEM266Q2M3C6 531 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 CFAP58Q5T655 872 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 C8orf76Q96K31 380 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 AEBP2Q6ZN18 517 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 KRT86O43790 486 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 MTIF2P46199 727 aaKnown RBP12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 GBP7Q8N8V2 638 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 MTRF1LQ9UGC7 380 aaKnown RBP12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 DNAI1Q9UI46 699 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 SOGA1O94964 1423 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 TTC21AQ8NDW8 1320 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 AKR1B10O60218 316 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 ERCC6LQ2NKX8 1250 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 BCAP29Q9UHQ4 241 aa12.86□□□□□ -0.35
LIMCH1-217ENST00000512946 ATP2C2O75185 946 aa12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 LRCH2Q5VUJ6 765 aa12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 INTS8Q75QN2 995 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 RAPGEF4Q8WZA2 1011 aa12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 VPS18Q9P253 973 aa12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 CCDC102BQ68D86 513 aa12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 FSIP1Q8NA03 581 aa12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 TBC1D2Q9BYX2 928 aa12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 TPD52P55327 224 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 NEDD9Q14511 834 aa12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 PABPN1LA6NDY0 278 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-217ENST00000512946 EIF4G1Q04637 1599 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 CASTP20810 708 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 AFAP1L1Q8TED9 768 aa12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 NOB1Q9ULX3 412 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 ARID4AP29374 1257 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 ZSCAN23Q3MJ62 389 aa12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 LUC7L3O95232 432 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 DZIP1Q86YF9 867 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 PPFIA2O75334 1257 aa12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 NOP2P46087 812 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 TNNC1P63316 161 aa12.84□□□□□ -0.35
LIMCH1-217ENST00000512946 BUB1BO60566 1050 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 LARSQ9P2J5 1176 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 XRCC6P12956 609 aaKnown RBP eCLIP12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 KRBA2Q6ZNG9 492 aa12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 VCX3AQ9NNX9 186 aa12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 ATP2A2P16615 1042 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 SSFA2P28290 1259 aa12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 SLC8A1P32418 973 aa12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 SPAG5Q96R06 1193 aa12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 MX1P20591 662 aa12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 TRPC3Q13507 836 aa12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 SPATS2LQ9NUQ6 558 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-217ENST00000512946 MSH5O43196 834 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 STX6O43752 255 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 GMNNO75496 209 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 KIF1BPQ96EK5 621 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 PPP2R1AP30153 589 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 NKIRAS1Q9NYS0 192 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 UBASH3AP57075 661 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 MAP3K21Q5TCX8 1036 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 STRN4Q9NRL3 753 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 MGEA5O60502 916 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 ZMAT2Q96NC0 199 aaKnown RBP12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 SSX2IPQ9Y2D8 614 aa12.82□□□□□ -0.36
LIMCH1-217ENST00000512946 NDUFAB1O14561 156 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 N4BP3O15049 544 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 PRC1O43663 620 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 RASSF2P50749 326 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 HNRNPMP52272 730 aaKnown RBP eCLIP12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 KIF5AQ12840 1032 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 PPP4R3AQ6IN85 833 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 RUFY4Q6ZNE9 571 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 USP37Q86T82 979 aa12.81□□□□□ -0.36
LIMCH1-217ENST00000512946 FAN1Q9Y2M0 1017 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms