RNA–Protein interactions for RNA: ENST00000512380.1

PDLIM3-208, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 764 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-208ENST00000512380 MEN1O00255 615 aa9.82□□□□□ -0.84
PDLIM3-208ENST00000512380 FKBP5Q13451 457 aaPredicted RBP9.82□□□□□ -0.84
PDLIM3-208ENST00000512380 LDLRAD1Q5T700 205 aa9.82□□□□□ -0.84
PDLIM3-208ENST00000512380 XPCQ01831 940 aaPredicted RBP9.81□□□□□ -0.84
PDLIM3-208ENST00000512380 NAA30Q147X3 362 aaPredicted RBP9.81□□□□□ -0.84
PDLIM3-208ENST00000512380 TMC7Q7Z402 723 aa9.81□□□□□ -0.84
PDLIM3-208ENST00000512380 NT5DC4Q86YG4 428 aa9.81□□□□□ -0.84
PDLIM3-208ENST00000512380 BRPF3Q9ULD4 1205 aa9.81□□□□□ -0.84
PDLIM3-208ENST00000512380 PTCD1O75127 700 aaKnown RBP9.8□□□□□ -0.84
PDLIM3-208ENST00000512380 PRICKLE2Q7Z3G6 844 aa9.8□□□□□ -0.84
PDLIM3-208ENST00000512380 FAM161BQ96MY7 647 aa9.8□□□□□ -0.84
PDLIM3-208ENST00000512380 LNPKQ9C0E8 428 aa9.8□□□□□ -0.84
PDLIM3-208ENST00000512380 ARHGEF10LQ9HCE6 1279 aa9.8□□□□□ -0.84
PDLIM3-208ENST00000512380 CWC22Q9HCG8 908 aaKnown RBP9.8□□□□□ -0.84
PDLIM3-208ENST00000512380 CDC14CA4D256 554 aa9.79□□□□□ -0.84
PDLIM3-208ENST00000512380 DHX38Q92620 1227 aaKnown RBP9.79□□□□□ -0.84
PDLIM3-208ENST00000512380 RBCK1Q9BYM8 510 aa9.79□□□□□ -0.84
PDLIM3-208ENST00000512380 MRS2Q9HD23 443 aa9.79□□□□□ -0.84
PDLIM3-208ENST00000512380 PRKAG2Q9UGJ0 569 aa9.79□□□□□ -0.84
PDLIM3-208ENST00000512380 PCDHGA11Q9Y5H2 935 aa9.79□□□□□ -0.84
PDLIM3-208ENST00000512380 MYCP01106 439 aaPredicted RBP9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 GNRH1P01148 92 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 WEE1P30291 646 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 SV2AQ7L0J3 742 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 METTL16Q86W50 562 aaKnown RBP9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 VWA5B2Q8N398 1253 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 TSEN2Q8NCE0 465 aaKnown RBP9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 GAS2L2Q8NHY3 880 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 HELQQ8TDG4 1101 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 NLRP3Q96P20 1036 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 TINF2Q9BSI4 451 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 COL25A1Q9BXS0 654 aaPredicted RBP9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 ESF1Q9H501 851 aaKnown RBP9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 CAPN10Q9HC96 672 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 PARP2Q9UGN5 583 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 UNC13AQ9UPW8 1703 aa9.78□□□□□ -0.84
PDLIM3-208ENST00000512380 BICRAQ9NZM4 1560 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 FAM13AO94988 1023 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 LDHBP07195 334 aaKnown RBP9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 RHOQP17081 205 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 RNFT1Q5M7Z0 435 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 ZNF662Q6ZS27 426 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 NOP9Q86U38 636 aaKnown RBP9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 TMC1Q8TDI8 760 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 CNTNAP3BQ96NU0 1288 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 CNTNAP3Q9BZ76 1288 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 GRIP2Q9C0E4 1043 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 CCSER2Q9H7U1 834 aa9.77□□□□□ -0.85
PDLIM3-208ENST00000512380 SPATA31C2B4DYI2 1134 aa9.76□□□□□ -0.85
PDLIM3-208ENST00000512380 NDUFB5O43674 189 aa9.76□□□□□ -0.85
PDLIM3-208ENST00000512380 ATP2B1P20020 1258 aa9.76□□□□□ -0.85
PDLIM3-208ENST00000512380 MAPK8P45983 427 aa9.76□□□□□ -0.85
PDLIM3-208ENST00000512380 FMR1Q06787 632 aaKnown RBP eCLIP9.76□□□□□ -0.85
PDLIM3-208ENST00000512380 SLC27A3Q5K4L6 730 aa9.76□□□□□ -0.85
PDLIM3-208ENST00000512380 CUEDC1Q9NWM3 386 aaPredicted RBP9.76□□□□□ -0.85
PDLIM3-208ENST00000512380 TREHO43280 583 aa9.75□□□□□ -0.85
PDLIM3-208ENST00000512380 GTF2F1P35269 517 aaKnown RBP eCLIP9.75□□□□□ -0.85
PDLIM3-208ENST00000512380 RNF34Q969K3 372 aa9.75□□□□□ -0.85
PDLIM3-208ENST00000512380 DUSP9Q99956 384 aaKnown RBP9.75□□□□□ -0.85
PDLIM3-208ENST00000512380 ESYT1Q9BSJ8 1104 aa9.75□□□□□ -0.85
PDLIM3-208ENST00000512380 TGIF2Q9GZN2 237 aa9.75□□□□□ -0.85
PDLIM3-208ENST00000512380 RAB6BQ9NRW1 208 aa9.75□□□□□ -0.85
PDLIM3-208ENST00000512380 IQSEC3Q9UPP2 1182 aaPredicted RBP9.75□□□□□ -0.85
PDLIM3-208ENST00000512380 TMA7Q9Y2S6 64 aaKnown RBP9.75□□□□□ -0.85
PDLIM3-208ENST00000512380 IL2RAP01589 272 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 MPSTP25325 297 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 WDR44Q5JSH3 913 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 NBPF10Q6P3W6 841 aaKnown RBP9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 NBPF15Q8N660 670 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 SLC43A3Q8NBI5 491 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 GMCL1Q96IK5 515 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 RNF19AQ9NV58 838 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 VTI1BQ9UEU0 232 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 DYRK1BQ9Y463 629 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 HRH3Q9Y5N1 445 aa9.74□□□□□ -0.85
PDLIM3-208ENST00000512380 SORBS3O60504 671 aa9.73□□□□□ -0.85
PDLIM3-208ENST00000512380 PRPF40AO75400 957 aaKnown RBP9.73□□□□□ -0.85
PDLIM3-208ENST00000512380 NPR3P17342 541 aa9.73□□□□□ -0.85
PDLIM3-208ENST00000512380 ITGAEP38570 1179 aa9.73□□□□□ -0.85
PDLIM3-208ENST00000512380 FGD1P98174 961 aa9.73□□□□□ -0.85
PDLIM3-208ENST00000512380 FANCCQ00597 558 aa9.73□□□□□ -0.85
PDLIM3-208ENST00000512380 PLCB3Q01970 1234 aa9.73□□□□□ -0.85
PDLIM3-208ENST00000512380 TRIM22Q8IYM9 498 aa9.73□□□□□ -0.85
PDLIM3-208ENST00000512380 CNKSR1Q969H4 720 aa9.73□□□□□ -0.85
PDLIM3-208ENST00000512380 SLURP2P0DP57 97 aa9.72□□□□□ -0.85
PDLIM3-208ENST00000512380 POU4F2Q12837 409 aa9.72□□□□□ -0.85
PDLIM3-208ENST00000512380 USP4Q13107 963 aa9.72□□□□□ -0.85
PDLIM3-208ENST00000512380 COL26A1Q96A83 441 aa9.72□□□□□ -0.85
PDLIM3-208ENST00000512380 ZNF837Q96EG3 531 aaPredicted RBP9.72□□□□□ -0.85
PDLIM3-208ENST00000512380 ACBD3Q9H3P7 528 aa9.72□□□□□ -0.85
PDLIM3-208ENST00000512380 METTL5Q9NRN9 209 aaKnown RBP9.72□□□□□ -0.85
PDLIM3-208ENST00000512380 WASLO00401 505 aaPredicted RBP9.71□□□□□ -0.86
PDLIM3-208ENST00000512380 PSMD2Q13200 908 aa9.71□□□□□ -0.86
PDLIM3-208ENST00000512380 CCDC144BQ3MJ40 725 aa9.71□□□□□ -0.86
PDLIM3-208ENST00000512380 TMC4Q7Z404 712 aa9.71□□□□□ -0.86
PDLIM3-208ENST00000512380 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.71□□□□□ -0.86
PDLIM3-208ENST00000512380 NLRP2Q9NX02 1062 aa9.71□□□□□ -0.86
PDLIM3-208ENST00000512380 M0R2N6 131 aa9.7□□□□□ -0.86
PDLIM3-208ENST00000512380 ZNF76P36508 570 aa9.7□□□□□ -0.86
PDLIM3-208ENST00000512380 TNNI2P48788 182 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms