RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 M0R2N6 131 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 EML1O00423 815 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 OIP5O43482 229 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 ARHGEF15O94989 841 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 GDF11O95390 407 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 PTK7Q13308 1070 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 UBAP2LQ14157 1087 aaKnown RBP5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 TMEM151AQ8N4L1 468 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 BEND7Q8N7W2 519 aaPredicted RBP5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 FAM200AQ8TCP9 573 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 CCDC97Q96F63 343 aaPredicted RBP5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 PHACTR1Q9C0D0 580 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 MARK1Q9P0L2 795 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 ANKIB1Q9P2G1 1089 aa5.28□□□□□ -1.56
LIMCH1-212ENST00000511424 NEURL1BA8MQ27 555 aa5.27□□□□□ -1.57
LIMCH1-212ENST00000511424 PHF20L1A8MW92 1017 aa5.27□□□□□ -1.57
LIMCH1-212ENST00000511424 TNP2Q05952 138 aa5.27□□□□□ -1.57
LIMCH1-212ENST00000511424 KANK4Q5T7N3 995 aaPredicted RBP5.27□□□□□ -1.57
LIMCH1-212ENST00000511424 ZNF295-AS1Q8N0V1 137 aa5.27□□□□□ -1.57
LIMCH1-212ENST00000511424 EDARADDQ8WWZ3 215 aa5.27□□□□□ -1.57
LIMCH1-212ENST00000511424 CEP63Q96MT8 703 aa5.27□□□□□ -1.57
LIMCH1-212ENST00000511424 CNTNAP5Q8WYK1 1306 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 C2CD2LO14523 706 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 FAM157BP0CG42 384 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 ADH6P28332 368 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 PCBP4P57723 403 aaKnown RBP5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 RASSF7Q02833 373 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 NEUROD1Q13562 356 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 CFAP70Q5T0N1 1121 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 ALDH16A1Q8IZ83 802 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 GAS2L2Q8NHY3 880 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 HSH2DQ96JZ2 352 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 NDFIP2Q9NV92 336 aa5.26□□□□□ -1.57
LIMCH1-212ENST00000511424 ARAFP10398 606 aa5.25□□□□□ -1.57
LIMCH1-212ENST00000511424 KCNMA1Q12791 1236 aa5.25□□□□□ -1.57
LIMCH1-212ENST00000511424 HIF1AQ16665 826 aa5.25□□□□□ -1.57
LIMCH1-212ENST00000511424 C1orf53Q5VUE5 145 aa5.25□□□□□ -1.57
LIMCH1-212ENST00000511424 BRD7Q9NPI1 651 aa5.25□□□□□ -1.57
LIMCH1-212ENST00000511424 LRRC4BQ9NT99 713 aa5.25□□□□□ -1.57
LIMCH1-212ENST00000511424 NOVA2Q9UNW9 492 aaKnown RBP5.25□□□□□ -1.57
LIMCH1-212ENST00000511424 GPC6Q9Y625 555 aaPredicted RBP5.25□□□□□ -1.57
LIMCH1-212ENST00000511424 ARID3CA6NKF2 412 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 SHISA8B8ZZ34 492 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 C21orf2O43822 256 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 DKK1O94907 266 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 ALAS2P22557 587 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 SAMD5Q5TGI4 173 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 KANK3Q6NY19 840 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 SLCO4C1Q6ZQN7 724 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 SUSD3Q96L08 255 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 C2orf49Q9BVC5 232 aaPredicted RBP5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 MKL2Q9ULH7 1088 aa5.24□□□□□ -1.57
LIMCH1-212ENST00000511424 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 PIK3R2O00459 728 aa5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 HIRAP54198 1017 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 TBC1D8BQ0IIM8 1120 aa5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 SFSWAPQ12872 951 aaKnown RBP5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 LAMC2Q13753 1193 aa5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 FAM182BQ5T319 152 aa5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 C1orf229Q6ZS94 237 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 RAB44Q7Z6P3 723 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 SYT9Q86SS6 491 aa5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 KCTD17Q8N5Z5 321 aa5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 ZNF280CQ8ND82 737 aa5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 IGFLR1Q9H665 355 aa5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 STRN4Q9NRL3 753 aa5.23□□□□□ -1.57
LIMCH1-212ENST00000511424 EPXP11678 715 aa5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 IGFBP4P22692 258 aa5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 SNRPNP63162 240 aaKnown RBP5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 SPEM2Q0P670 501 aa5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 RTN1Q16799 776 aa5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 ZNF468Q5VIY5 522 aaPredicted RBP5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 C14orf37Q86TY3 774 aa5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 STAG2Q8N3U4 1231 aa5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 PNMA5Q96PV4 448 aa5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 SERPINA10Q9UK55 444 aa5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 KCNH4Q9UQ05 1017 aa5.22□□□□□ -1.57
LIMCH1-212ENST00000511424 EFSO43281 561 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 PRMT3O60678 531 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 GRIN2CQ14957 1233 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 GPAT2Q6NUI2 795 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 CHSY3Q70JA7 882 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 BTLAQ7Z6A9 289 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 BHMTQ93088 406 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 BTBD6Q96KE9 485 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 PRIMPOLQ96LW4 560 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 ARXQ96QS3 562 aa5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 AVENQ9NQS1 362 aaPredicted RBP5.21□□□□□ -1.58
LIMCH1-212ENST00000511424 FOXO3O43524 673 aa5.2□□□□□ -1.58
LIMCH1-212ENST00000511424 EPB42P16452 691 aa5.2□□□□□ -1.58
LIMCH1-212ENST00000511424 DGKZQ13574 1117 aa5.2□□□□□ -1.58
LIMCH1-212ENST00000511424 FCHSD1Q86WN1 690 aa5.2□□□□□ -1.58
LIMCH1-212ENST00000511424 SLC30A3Q99726 388 aa5.2□□□□□ -1.58
LIMCH1-212ENST00000511424 KLK14Q9P0G3 267 aa5.2□□□□□ -1.58
LIMCH1-212ENST00000511424 ELOA3CA0A087WX78 387 aaPredicted RBP5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 ELOA3DA6NLF2 546 aaPredicted RBP5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 GNB5O14775 395 aa5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 TYRO3Q06418 890 aa5.19□□□□□ -1.58
LIMCH1-212ENST00000511424 ELOA3BQ3SY89 546 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms