RNA–Protein interactions for RNA: ENST00000509774.5

PTPN20-222, Transcript of protein tyrosine phosphatase, non-receptor type 20, human

TSL 1 (best) BASIC

Gene PTPN20, Length 788 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN20-222	ENST00000509774	COL5A3	P25940	1745 aa	Predicted RBP	13.84	□□□□□ -0.19
PTPN20-222	ENST00000509774	DLEC1	Q9Y238	1755 aa		13.83	□□□□□ -0.19
PTPN20-222	ENST00000509774	GYS1	P13807	737 aa		13.83	□□□□□ -0.2
PTPN20-222	ENST00000509774	LMNB1	P20700	586 aa		13.83	□□□□□ -0.2
PTPN20-222	ENST00000509774	CHRNA5	P30532	468 aa		13.83	□□□□□ -0.2
PTPN20-222	ENST00000509774	TNNT2	P45379	298 aa	Predicted RBP	13.83	□□□□□ -0.2
PTPN20-222	ENST00000509774	RALBP1	Q15311	655 aa		13.83	□□□□□ -0.2
PTPN20-222	ENST00000509774	EMILIN1	Q9Y6C2	1016 aa		13.83	□□□□□ -0.2
PTPN20-222	ENST00000509774	PARP3	Q9Y6F1	533 aa		13.83	□□□□□ -0.2
PTPN20-222	ENST00000509774	PCDH11X	Q9BZA7	1347 aa		13.83	□□□□□ -0.2
PTPN20-222	ENST00000509774	PCDH11Y	Q9BZA8	1340 aa		13.83	□□□□□ -0.2
PTPN20-222	ENST00000509774	CYP27B1	O15528	508 aa		13.82	□□□□□ -0.2
PTPN20-222	ENST00000509774	NBPF6	Q5VWK0	638 aa		13.82	□□□□□ -0.2
PTPN20-222	ENST00000509774	USHBP1	Q8N6Y0	703 aa		13.82	□□□□□ -0.2
PTPN20-222	ENST00000509774	NBPF4	Q96M43	638 aa		13.82	□□□□□ -0.2
PTPN20-222	ENST00000509774	PPM1G	O15355	546 aa	Predicted RBP	13.81	□□□□□ -0.2
PTPN20-222	ENST00000509774	HSP90AB2P	Q58FF8	381 aa		13.81	□□□□□ -0.2
PTPN20-222	ENST00000509774	TRAPPC3L	Q5T215	181 aa		13.81	□□□□□ -0.2
PTPN20-222	ENST00000509774	PASK	Q96RG2	1323 aa		13.81	□□□□□ -0.2
PTPN20-222	ENST00000509774	SMG6	Q86US8	1419 aa	Known RBP	13.81	□□□□□ -0.2
PTPN20-222	ENST00000509774	CASP8AP2	Q9UKL3	1982 aa		13.8	□□□□□ -0.2
PTPN20-222	ENST00000509774	ZNF831	Q5JPB2	1677 aa		13.8	□□□□□ -0.2
PTPN20-222	ENST00000509774	ATP6V1A	P38606	617 aa		13.8	□□□□□ -0.2
PTPN20-222	ENST00000509774	MTHFS	P49914	203 aa		13.8	□□□□□ -0.2
PTPN20-222	ENST00000509774	RAPGEF4	Q8WZA2	1011 aa		13.8	□□□□□ -0.2
PTPN20-222	ENST00000509774	ARHGEF1	Q92888	912 aa	Known RBP	13.8	□□□□□ -0.2
PTPN20-222	ENST00000509774	AFDN	P55196	1824 aa	Known RBP	13.8	□□□□□ -0.2
PTPN20-222	ENST00000509774	ANKRD26	Q9UPS8	1709 aa		13.79	□□□□□ -0.2
PTPN20-222	ENST00000509774	SNPH	O15079	494 aa		13.79	□□□□□ -0.2
PTPN20-222	ENST00000509774	CDAN1	Q8IWY9	1227 aa		13.79	□□□□□ -0.2
PTPN20-222	ENST00000509774	RTCB	Q9Y3I0	505 aa	Known RBP	13.79	□□□□□ -0.2
PTPN20-222	ENST00000509774	THSD7B	Q9C0I4	1608 aa		13.79	□□□□□ -0.2
PTPN20-222	ENST00000509774	TAT	P17735	454 aa	Predicted RBP	13.78	□□□□□ -0.2
PTPN20-222	ENST00000509774	ASAP1	Q9ULH1	1129 aa		13.78	□□□□□ -0.2
PTPN20-222	ENST00000509774	FER1L6	Q2WGJ9	1857 aa		13.78	□□□□□ -0.2
PTPN20-222	ENST00000509774	PPP2R1A	P30153	589 aa		13.77	□□□□□ -0.21
PTPN20-222	ENST00000509774	DDR1	Q08345	913 aa		13.77	□□□□□ -0.21
PTPN20-222	ENST00000509774	CFAP53	Q96M91	514 aa		13.77	□□□□□ -0.21
PTPN20-222	ENST00000509774	SCN4A	P35499	1836 aa		13.76	□□□□□ -0.21
PTPN20-222	ENST00000509774	KDR	P35968	1356 aa		13.76	□□□□□ -0.21
PTPN20-222	ENST00000509774	TMEM88B	A6NKF7	163 aa		13.76	□□□□□ -0.21
PTPN20-222	ENST00000509774	CFAP44	Q96MT7	982 aa		13.76	□□□□□ -0.21
PTPN20-222	ENST00000509774	NFKBIE	O00221	500 aa		13.75	□□□□□ -0.21
PTPN20-222	ENST00000509774	RFC4	P35249	363 aa		13.75	□□□□□ -0.21
PTPN20-222	ENST00000509774	MAP2K1	Q02750	393 aa	Predicted RBP	13.75	□□□□□ -0.21
PTPN20-222	ENST00000509774	EIF4A2	Q14240	407 aa	Known RBP	13.75	□□□□□ -0.21
PTPN20-222	ENST00000509774	DPY19L2	Q6NUT2	758 aa		13.75	□□□□□ -0.21
PTPN20-222	ENST00000509774	RASSF10	A6NK89	507 aa		13.74	□□□□□ -0.21
PTPN20-222	ENST00000509774	DIAPH1	O60610	1272 aa	Known RBP	13.74	□□□□□ -0.21
PTPN20-222	ENST00000509774	IL13	P35225	146 aa		13.74	□□□□□ -0.21
PTPN20-222	ENST00000509774	CNGB1	Q14028	1251 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN20-222	ENST00000509774	NKX1-1	Q15270	411 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN20-222	ENST00000509774	SLC4A9	Q96Q91	983 aa		13.74	□□□□□ -0.21
PTPN20-222	ENST00000509774	EYA1	Q99502	592 aa		13.74	□□□□□ -0.21
PTPN20-222	ENST00000509774	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN20-222	ENST00000509774	LTBP1	Q14766	1721 aa		13.73	□□□□□ -0.21
PTPN20-222	ENST00000509774	ADAMTS7	Q9UKP4	1686 aa		13.73	□□□□□ -0.21
PTPN20-222	ENST00000509774	WDR33	Q9C0J8	1336 aa	Known RBP	13.73	□□□□□ -0.21
PTPN20-222	ENST00000509774	ITGBL1	O95965	494 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN20-222	ENST00000509774	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN20-222	ENST00000509774	ATG3	Q9NT62	314 aa		13.73	□□□□□ -0.21
PTPN20-222	ENST00000509774	NUDC	Q9Y266	331 aa		13.73	□□□□□ -0.21
PTPN20-222	ENST00000509774	ADAMTSL1	Q8N6G6	1762 aa		13.73	□□□□□ -0.21
PTPN20-222	ENST00000509774	NRXN2	Q9P2S2	1712 aa		13.73	□□□□□ -0.21
PTPN20-222	ENST00000509774	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.72	□□□□□ -0.21
PTPN20-222	ENST00000509774	RPS6KA4	O75676	772 aa		13.72	□□□□□ -0.21
PTPN20-222	ENST00000509774	RC3H1	Q5TC82	1133 aa	Known RBP	13.72	□□□□□ -0.21
PTPN20-222	ENST00000509774	TMOD3	Q9NYL9	352 aa		13.72	□□□□□ -0.21
PTPN20-222	ENST00000509774	CNTNAP4	Q9C0A0	1308 aa		13.71	□□□□□ -0.21
PTPN20-222	ENST00000509774		G3V3G9	751 aa		13.71	□□□□□ -0.21
PTPN20-222	ENST00000509774	DEFB115	Q30KQ5	88 aa		13.71	□□□□□ -0.21
PTPN20-222	ENST00000509774	LDHD	Q86WU2	507 aa		13.71	□□□□□ -0.21
PTPN20-222	ENST00000509774	MCOLN1	Q9GZU1	580 aa		13.71	□□□□□ -0.21
PTPN20-222	ENST00000509774	SRP68	Q9UHB9	627 aa	Known RBP	13.71	□□□□□ -0.21
PTPN20-222	ENST00000509774	NCAPD2	Q15021	1401 aa		13.71	□□□□□ -0.22
PTPN20-222	ENST00000509774	POLRMT	O00411	1230 aa	Known RBP	13.7	□□□□□ -0.22
PTPN20-222	ENST00000509774	ANP32C	O43423	234 aa		13.7	□□□□□ -0.22
PTPN20-222	ENST00000509774	DDN	O94850	711 aa	Predicted RBP	13.69	□□□□□ -0.22
PTPN20-222	ENST00000509774	PRPF38B	Q5VTL8	546 aa	Known RBP	13.69	□□□□□ -0.22
PTPN20-222	ENST00000509774	MARVELD3	Q96A59	401 aa		13.69	□□□□□ -0.22
PTPN20-222	ENST00000509774	TSKS	Q9UJT2	592 aa		13.69	□□□□□ -0.22
PTPN20-222	ENST00000509774	USP42	Q9H9J4	1324 aa	Known RBP	13.68	□□□□□ -0.22
PTPN20-222	ENST00000509774	CACNA1S	Q13698	1873 aa		13.68	□□□□□ -0.22
PTPN20-222	ENST00000509774	ERFE	Q4G0M1	354 aa		13.68	□□□□□ -0.22
PTPN20-222	ENST00000509774	AMOT	Q4VCS5	1084 aa		13.68	□□□□□ -0.22
PTPN20-222	ENST00000509774	TTLL6	Q8N841	843 aa		13.68	□□□□□ -0.22
PTPN20-222	ENST00000509774	ANKRD31	Q8N7Z5	1873 aa		13.67	□□□□□ -0.22
PTPN20-222	ENST00000509774	TM4SF1	P30408	202 aa		13.67	□□□□□ -0.22
PTPN20-222	ENST00000509774	SPG7	Q9UQ90	795 aa		13.67	□□□□□ -0.22
PTPN20-222	ENST00000509774	BOLA1	Q9Y3E2	137 aa		13.67	□□□□□ -0.22
PTPN20-222	ENST00000509774	TRPM7	Q96QT4	1865 aa		13.67	□□□□□ -0.22
PTPN20-222	ENST00000509774	SULT6B1	Q6IMI4	303 aa		13.66	□□□□□ -0.22
PTPN20-222	ENST00000509774	PNN	Q9H307	717 aa	Known RBP	13.66	□□□□□ -0.22
PTPN20-222	ENST00000509774	TAF1D	Q9H5J8	278 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPN20-222	ENST00000509774	TJP1	Q07157	1748 aa		13.65	□□□□□ -0.22
PTPN20-222	ENST00000509774	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.65	□□□□□ -0.22
PTPN20-222	ENST00000509774	EFCAB3	Q8N7B9	438 aa		13.65	□□□□□ -0.22
PTPN20-222	ENST00000509774	BEGAIN	Q9BUH8	593 aa		13.65	□□□□□ -0.22
PTPN20-222	ENST00000509774	COL11A2	P13942	1736 aa	Predicted RBP	13.64	□□□□□ -0.23
PTPN20-222	ENST00000509774	IQCA1L	A6NCM1	817 aa		13.64	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms