RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TSC1Q92574 1164 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 TRIM7Q9C029 511 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 TRIM5Q9C035 493 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 NKTRP30414 1462 aaKnown RBP4.15□□□□□ -1.74
USP53-205ENST00000509769 DESP17661 470 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 MAP3K21Q5TCX8 1036 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 YY1AP1Q9H869 796 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 ZC4H2Q9NQZ6 224 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 ANAPC4Q9UJX5 808 aa4.15□□□□□ -1.74
USP53-205ENST00000509769 PHLPP1O60346 1717 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 VWDEQ8N2E2 1590 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 AFF2P51816 1311 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 OFD1O75665 1012 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 ZWINTO95229 277 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 PPFIBP1Q86W92 1011 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 CCDC150Q8NCX0 1101 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 LZICQ8WZA0 190 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 MPHOSPH6Q99547 160 aaKnown RBP4.15□□□□□ -1.75
USP53-205ENST00000509769 PARD3Q8TEW0 1356 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 CTTNBP2Q8WZ74 1663 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 PTCH1Q13635 1447 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 A0A1B0GW55 424 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 H0YC42 278 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 NDC80O14777 642 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 KIF4AO95239 1232 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 DUX4L2P0CJ85 424 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 DUX4L3P0CJ86 424 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 DUX4L4P0CJ87 422 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 DUX4L5P0CJ88 424 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 DUX4L6P0CJ89 424 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 DUX4L7P0CJ90 424 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 PSMA5P28066 241 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 PRELPP51888 382 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 CLNS1AP54105 237 aaKnown RBP4.15□□□□□ -1.75
USP53-205ENST00000509769 TPD52P55327 224 aaPredicted RBP4.15□□□□□ -1.75
USP53-205ENST00000509769 RIPPLY1Q0D2K3 151 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 SYNE3Q6ZMZ3 975 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 CADPS2Q86UW7 1296 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 OTUD6BQ8N6M0 293 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 LRRC59Q96AG4 307 aaKnown RBP4.15□□□□□ -1.75
USP53-205ENST00000509769 UBA5Q9GZZ9 404 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 DIABLOQ9NR28 239 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 MAGEC2Q9UBF1 373 aaPredicted RBP4.15□□□□□ -1.75
USP53-205ENST00000509769 DUX4Q9UBX2 424 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 STAG3Q9UJ98 1225 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 SMC3Q9UQE7 1217 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 IQGAP1P46940 1657 aa4.15□□□□□ -1.75
USP53-205ENST00000509769 WDR33Q9C0J8 1336 aaKnown RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 CCNB3Q8WWL7 1395 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 ATP8B1O43520 1251 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 ATP11AP98196 1134 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 MVPQ14764 893 aaKnown RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 WWC2Q6AWC2 1192 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 BICD2Q8TD16 824 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 LRRC45Q96CN5 670 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 TSPYL2Q9H2G4 693 aaPredicted RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 ARHGAP5Q13017 1502 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 CEP162Q5TB80 1403 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 ARHGAP23Q9P227 1491 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 KIF15Q9NS87 1388 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 TSPY2A6NKD2 308 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 TTC36A6NLP5 189 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 TSPY3P0CV98 308 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 TSPY8P0CW00 308 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 PSMA4P25789 261 aaKnown RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 EPS15P42566 896 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 MAP3K9P80192 1104 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 TSPY1Q01534 308 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 NMIQ13287 307 aaPredicted RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 SAFBQ15424 915 aaKnown RBP eCLIP4.14□□□□□ -1.75
USP53-205ENST00000509769 CTAGE6Q86UF2 777 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 ARHGAP18Q8N392 663 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 TAF4BQ92750 862 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 DDX27Q96GQ7 796 aaKnown RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 SH3GL3Q99963 347 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 DDX23Q9BUQ8 820 aaKnown RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 ERICH4A6NGS2 130 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 CHMP2AO43633 222 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 KINO60870 393 aaKnown RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 STIM1Q13586 685 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 PCMTD1Q96MG8 357 aaPredicted RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 MIS18AQ9NYP9 233 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 SEC63Q9UGP8 760 aaKnown RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 HIP1O00291 1037 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 KCNA6P17658 529 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 ANKRD1Q15327 319 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 CEP57L1Q8IYX8 460 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 Q9H521 79 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 TTC12Q9H892 705 aaPredicted RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 PRM3Q9NNZ6 103 aa4.14□□□□□ -1.75
USP53-205ENST00000509769 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.14□□□□□ -1.75
USP53-205ENST00000509769 CCDC7Q96M83 1385 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 XBP1P17861 261 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 GTF2F1P35269 517 aaKnown RBP eCLIP4.13□□□□□ -1.75
USP53-205ENST00000509769 PDE6BP35913 854 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 PEX19P40855 299 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 RNF187Q5TA31 235 aaPredicted RBP4.13□□□□□ -1.75
USP53-205ENST00000509769 CCDC30Q5VVM6 783 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 CCHCR1Q8TD31 782 aa4.13□□□□□ -1.75
USP53-205ENST00000509769 ARFGAP3Q9NP61 516 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms