RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 NBPF15Q8N660 670 aa18.97■□□□□ 0.63
HMGCS1-203ENST00000507004 LAMB4A4D0S4 1761 aa18.96■□□□□ 0.63
HMGCS1-203ENST00000507004 ERVV-1B6SEH8 477 aa18.96■□□□□ 0.63
HMGCS1-203ENST00000507004 RIPK4P57078 832 aa18.96■□□□□ 0.63
HMGCS1-203ENST00000507004 C16orf71Q8IYS4 520 aaPredicted RBP18.96■□□□□ 0.63
HMGCS1-203ENST00000507004 MASTLQ96GX5 879 aa18.96■□□□□ 0.63
HMGCS1-203ENST00000507004 KDM3BQ7LBC6 1761 aa18.96■□□□□ 0.63
HMGCS1-203ENST00000507004 MIS18AQ9NYP9 233 aa18.95■□□□□ 0.62
HMGCS1-203ENST00000507004 NIP7Q9Y221 180 aaKnown RBP eCLIP18.95■□□□□ 0.62
HMGCS1-203ENST00000507004 SRGNP10124 158 aa18.94■□□□□ 0.62
HMGCS1-203ENST00000507004 PIP4K2AP48426 406 aaPredicted RBP18.94■□□□□ 0.62
HMGCS1-203ENST00000507004 WDR43Q15061 677 aaKnown RBP eCLIP18.94■□□□□ 0.62
HMGCS1-203ENST00000507004 KIF6Q6ZMV9 814 aa18.94■□□□□ 0.62
HMGCS1-203ENST00000507004 RBM46Q8TBY0 533 aaKnown RBP18.94■□□□□ 0.62
HMGCS1-203ENST00000507004 NYXQ9GZU5 481 aa18.94■□□□□ 0.62
HMGCS1-203ENST00000507004 TSPYL4Q9UJ04 414 aa18.94■□□□□ 0.62
HMGCS1-203ENST00000507004 SBF1O95248 1867 aa18.93■□□□□ 0.62
HMGCS1-203ENST00000507004 TMPOP42166 694 aaKnown RBP18.93■□□□□ 0.62
HMGCS1-203ENST00000507004 LTBP3Q9NS15 1303 aa18.93■□□□□ 0.62
HMGCS1-203ENST00000507004 ANKRD31Q8N7Z5 1873 aa18.92■□□□□ 0.62
HMGCS1-203ENST00000507004 NPR1P16066 1061 aa18.92■□□□□ 0.62
HMGCS1-203ENST00000507004 GTF2E1P29083 439 aaPredicted RBP18.92■□□□□ 0.62
HMGCS1-203ENST00000507004 NMRK2Q9NPI5 230 aa18.92■□□□□ 0.62
HMGCS1-203ENST00000507004 MAP3K15Q6ZN16 1313 aa18.92■□□□□ 0.62
HMGCS1-203ENST00000507004 KLRG2A4D1S0 409 aaPredicted RBP18.91■□□□□ 0.62
HMGCS1-203ENST00000507004 RASSF7Q02833 373 aa18.91■□□□□ 0.62
HMGCS1-203ENST00000507004 FSTL1Q12841 308 aa18.91■□□□□ 0.62
HMGCS1-203ENST00000507004 DPY19L2Q6NUT2 758 aa18.91■□□□□ 0.62
HMGCS1-203ENST00000507004 RUNDC1Q96C34 613 aa18.91■□□□□ 0.62
HMGCS1-203ENST00000507004 THUMPD2Q9BTF0 503 aaKnown RBP18.91■□□□□ 0.62
HMGCS1-203ENST00000507004 GLTPD2A6NH11 291 aa18.9■□□□□ 0.62
HMGCS1-203ENST00000507004 NFKBIEO00221 500 aa18.9■□□□□ 0.62
HMGCS1-203ENST00000507004 C21orf2O43822 256 aa18.9■□□□□ 0.62
HMGCS1-203ENST00000507004 APLP1P51693 650 aa18.9■□□□□ 0.62
HMGCS1-203ENST00000507004 TAOK3Q9H2K8 898 aa18.9■□□□□ 0.62
HMGCS1-203ENST00000507004 RRP7AQ9Y3A4 280 aaKnown RBP18.9■□□□□ 0.62
HMGCS1-203ENST00000507004 IBTKQ9P2D0 1353 aaPredicted RBP18.9■□□□□ 0.62
HMGCS1-203ENST00000507004 ALDH1B1P30837 517 aa18.89■□□□□ 0.61
HMGCS1-203ENST00000507004 PRPF40BQ6NWY9 871 aaKnown RBP18.89■□□□□ 0.61
HMGCS1-203ENST00000507004 TNRC6CQ9HCJ0 1690 aaKnown RBP18.89■□□□□ 0.61
HMGCS1-203ENST00000507004 CCDC24Q8N4L8 307 aa18.88■□□□□ 0.61
HMGCS1-203ENST00000507004 VEGFAP15692 232 aaPredicted RBP18.87■□□□□ 0.61
HMGCS1-203ENST00000507004 HLFQ16534 295 aa18.87■□□□□ 0.61
HMGCS1-203ENST00000507004 PARP10Q53GL7 1025 aa18.87■□□□□ 0.61
HMGCS1-203ENST00000507004 CCDC93Q567U6 631 aa18.87■□□□□ 0.61
HMGCS1-203ENST00000507004 PRKRIP1Q9H875 184 aaPredicted RBP18.87■□□□□ 0.61
HMGCS1-203ENST00000507004 COL11A2P13942 1736 aaPredicted RBP18.86■□□□□ 0.61
HMGCS1-203ENST00000507004 RIC1Q4ADV7 1423 aa18.86■□□□□ 0.61
HMGCS1-203ENST00000507004 MYL6BP14649 208 aa18.86■□□□□ 0.61
HMGCS1-203ENST00000507004 ERFEQ4G0M1 354 aa18.86■□□□□ 0.61
HMGCS1-203ENST00000507004 GIGYF2Q6Y7W6 1299 aaKnown RBP18.86■□□□□ 0.61
HMGCS1-203ENST00000507004 NGEFQ8N5V2 710 aa18.86■□□□□ 0.61
HMGCS1-203ENST00000507004 RRAGCQ9HB90 399 aa18.86■□□□□ 0.61
HMGCS1-203ENST00000507004 ARFGEF2Q9Y6D5 1785 aa18.86■□□□□ 0.61
HMGCS1-203ENST00000507004 ZEB1P37275 1124 aaPredicted RBP18.85■□□□□ 0.61
HMGCS1-203ENST00000507004 GRIPAP1Q4V328 841 aa18.85■□□□□ 0.61
HMGCS1-203ENST00000507004 HSP90AB3PQ58FF7 597 aa18.85■□□□□ 0.61
HMGCS1-203ENST00000507004 CC2D2BQ6DHV5 1058 aa18.85■□□□□ 0.61
HMGCS1-203ENST00000507004 PPP1R42Q7Z4L9 355 aa18.85■□□□□ 0.61
HMGCS1-203ENST00000507004 RTKN2Q8IZC4 609 aa18.85■□□□□ 0.61
HMGCS1-203ENST00000507004 SMC1BQ8NDV3 1235 aa18.85■□□□□ 0.61
HMGCS1-203ENST00000507004 FER1L6Q2WGJ9 1857 aa18.85■□□□□ 0.61
HMGCS1-203ENST00000507004 RNF123Q5XPI4 1314 aa18.84■□□□□ 0.61
HMGCS1-203ENST00000507004 CHL1O00533 1208 aa18.84■□□□□ 0.61
HMGCS1-203ENST00000507004 HOXB7P09629 217 aa18.84■□□□□ 0.61
HMGCS1-203ENST00000507004 CALD1Q05682 793 aaKnown RBP18.83■□□□□ 0.6
HMGCS1-203ENST00000507004 CRY2Q49AN0 593 aa18.83■□□□□ 0.6
HMGCS1-203ENST00000507004 TTLL7Q6ZT98 887 aa18.83■□□□□ 0.6
HMGCS1-203ENST00000507004 C7orf43Q8WVR3 580 aa18.83■□□□□ 0.6
HMGCS1-203ENST00000507004 ZNF219Q9P2Y4 722 aaPredicted RBP18.83■□□□□ 0.6
HMGCS1-203ENST00000507004 NUP98P52948 1817 aa18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 SLX4Q8IY92 1834 aa18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 FAM177BA6PVY3 158 aa18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 EIF2S2P20042 333 aaKnown RBP18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 PRELPP51888 382 aa18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 NEUROD2Q15784 382 aa18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 CCDC146Q8IYE0 955 aa18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 ZNF34Q8IZ26 560 aa18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 ZBTB3Q9H5J0 574 aa18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 ADAMTS8Q9UP79 889 aa18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 DICER1Q9UPY3 1922 aaKnown RBP18.82■□□□□ 0.6
HMGCS1-203ENST00000507004 FKBP4Q02790 459 aaKnown RBP eCLIP18.81■□□□□ 0.6
HMGCS1-203ENST00000507004 CHMP4AQ9BY43 222 aa18.81■□□□□ 0.6
HMGCS1-203ENST00000507004 CCDC88AQ3V6T2 1871 aa18.81■□□□□ 0.6
HMGCS1-203ENST00000507004 TIAM2Q8IVF5 1701 aa18.8■□□□□ 0.6
HMGCS1-203ENST00000507004 HOXA10P31260 410 aaPredicted RBP18.8■□□□□ 0.6
HMGCS1-203ENST00000507004 PDIA6Q15084 440 aa18.8■□□□□ 0.6
HMGCS1-203ENST00000507004 RPGRQ92834 1020 aaKnown RBP18.8■□□□□ 0.6
HMGCS1-203ENST00000507004 DDX21Q9NR30 783 aaKnown RBP eCLIP18.8■□□□□ 0.6
HMGCS1-203ENST00000507004 GPTP24298 496 aa18.79■□□□□ 0.6
HMGCS1-203ENST00000507004 LRP10Q7Z4F1 713 aa18.79■□□□□ 0.6
HMGCS1-203ENST00000507004 RBM17Q96I25 401 aaKnown RBP18.79■□□□□ 0.6
HMGCS1-203ENST00000507004 CFAP44Q96MT7 982 aa18.79■□□□□ 0.6
HMGCS1-203ENST00000507004 TMX4Q9H1E5 349 aaPredicted RBP18.79■□□□□ 0.6
HMGCS1-203ENST00000507004 TRIM35Q9UPQ4 493 aa18.79■□□□□ 0.6
HMGCS1-203ENST00000507004 IQCA1LA6NCM1 817 aa18.78■□□□□ 0.6
HMGCS1-203ENST00000507004 SUSD4Q5VX71 490 aa18.78■□□□□ 0.6
HMGCS1-203ENST00000507004 NUTM1Q86Y26 1132 aa18.78■□□□□ 0.6
HMGCS1-203ENST00000507004 NLRP3Q96P20 1036 aa18.78■□□□□ 0.6
HMGCS1-203ENST00000507004 CRAMP1Q96RY5 1269 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms