RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 GOLGB1Q14789 3259 aaKnown RBP23.51■■□□□ 1.35
NPHP4-210ENST00000506941 POLRMTO00411 1230 aaKnown RBP23.51■■□□□ 1.35
NPHP4-210ENST00000506941 TBC1D9BQ66K14 1250 aa23.51■■□□□ 1.35
NPHP4-210ENST00000506941 MYH16Q9H6N6 1097 aa23.51■■□□□ 1.35
NPHP4-210ENST00000506941 BRCA1P38398 1863 aaKnown RBP23.5■■□□□ 1.35
NPHP4-210ENST00000506941 EXOSC9Q06265 439 aaKnown RBP23.5■■□□□ 1.35
NPHP4-210ENST00000506941 GOLGA2Q08379 1002 aa23.5■■□□□ 1.35
NPHP4-210ENST00000506941 HLFQ16534 295 aa23.5■■□□□ 1.35
NPHP4-210ENST00000506941 TWISTNBQ3B726 338 aaPredicted RBP23.5■■□□□ 1.35
NPHP4-210ENST00000506941 KLHL34Q8N239 644 aa23.5■■□□□ 1.35
NPHP4-210ENST00000506941 SYT17Q9BSW7 474 aa23.5■■□□□ 1.35
NPHP4-210ENST00000506941 PARP3Q9Y6F1 533 aa23.5■■□□□ 1.35
NPHP4-210ENST00000506941 C10orf71Q711Q0 1435 aa23.5■■□□□ 1.35
NPHP4-210ENST00000506941 BICDL1Q6ZP65 573 aa23.49■■□□□ 1.35
NPHP4-210ENST00000506941 DBF4Q9UBU7 674 aaPredicted RBP23.49■■□□□ 1.35
NPHP4-210ENST00000506941 MAP3K15Q6ZN16 1313 aa23.49■■□□□ 1.35
NPHP4-210ENST00000506941 KIF6Q6ZMV9 814 aa23.48■■□□□ 1.35
NPHP4-210ENST00000506941 XAGE3Q8WTP9 111 aa23.48■■□□□ 1.35
NPHP4-210ENST00000506941 CDCA7LQ96GN5 454 aa23.48■■□□□ 1.35
NPHP4-210ENST00000506941 SLFN5Q08AF3 891 aa23.47■■□□□ 1.35
NPHP4-210ENST00000506941 CLEC4GQ6UXB4 293 aa23.47■■□□□ 1.35
NPHP4-210ENST00000506941 COPS6Q7L5N1 327 aa23.47■■□□□ 1.35
NPHP4-210ENST00000506941 NLGN2Q8NFZ4 835 aa23.47■■□□□ 1.35
NPHP4-210ENST00000506941 ZBTB3Q9H5J0 574 aa23.47■■□□□ 1.35
NPHP4-210ENST00000506941 DLEC1Q9Y238 1755 aa23.47■■□□□ 1.35
NPHP4-210ENST00000506941 ERVV-1B6SEH8 477 aa23.46■■□□□ 1.35
NPHP4-210ENST00000506941 E9PSI1 815 aa23.46■■□□□ 1.35
NPHP4-210ENST00000506941 RGL2O15211 777 aa23.46■■□□□ 1.35
NPHP4-210ENST00000506941 ZNF652Q9Y2D9 606 aa23.46■■□□□ 1.35
NPHP4-210ENST00000506941 CARMIL3Q8ND23 1372 aa23.45■■□□□ 1.34
NPHP4-210ENST00000506941 HNRNPUQ00839 825 aaKnown RBP eCLIP23.45■■□□□ 1.34
NPHP4-210ENST00000506941 AIMP1Q12904 312 aaKnown RBP23.45■■□□□ 1.34
NPHP4-210ENST00000506941 CCDC30Q5VVM6 783 aa23.45■■□□□ 1.34
NPHP4-210ENST00000506941 CD2APQ9Y5K6 639 aa23.45■■□□□ 1.34
NPHP4-210ENST00000506941 ATP10DQ9P241 1426 aa23.44■■□□□ 1.34
NPHP4-210ENST00000506941 TCERG1O14776 1098 aaKnown RBP23.44■■□□□ 1.34
NPHP4-210ENST00000506941 VAMP4O75379 141 aa23.44■■□□□ 1.34
NPHP4-210ENST00000506941 HYPKQ9NX55 129 aa23.44■■□□□ 1.34
NPHP4-210ENST00000506941 COL11A2P13942 1736 aaPredicted RBP23.44■■□□□ 1.34
NPHP4-210ENST00000506941 SERPINB2P05120 415 aa23.43■■□□□ 1.34
NPHP4-210ENST00000506941 PHAXQ9H814 394 aaKnown RBP23.43■■□□□ 1.34
NPHP4-210ENST00000506941 TRMT2AQ8IZ69 625 aaKnown RBP23.42■■□□□ 1.34
NPHP4-210ENST00000506941 SETDB2Q96T68 719 aa23.42■■□□□ 1.34
NPHP4-210ENST00000506941 PXDNLA1KZ92 1463 aa23.42■■□□□ 1.34
NPHP4-210ENST00000506941 GIGYF2Q6Y7W6 1299 aaKnown RBP23.41■■□□□ 1.34
NPHP4-210ENST00000506941 NIP7Q9Y221 180 aaKnown RBP eCLIP23.41■■□□□ 1.34
NPHP4-210ENST00000506941 CACNA1SQ13698 1873 aa23.41■■□□□ 1.34
NPHP4-210ENST00000506941 CHMP4AQ9BY43 222 aa23.4■■□□□ 1.34
NPHP4-210ENST00000506941 TNRC6CQ9HCJ0 1690 aaKnown RBP23.4■■□□□ 1.34
NPHP4-210ENST00000506941 UBN2Q6ZU65 1347 aa23.39■■□□□ 1.34
NPHP4-210ENST00000506941 UTRNP46939 3433 aa23.39■■□□□ 1.33
NPHP4-210ENST00000506941 LAMB2P55268 1798 aa23.38■■□□□ 1.33
NPHP4-210ENST00000506941 GPTP24298 496 aa23.38■■□□□ 1.33
NPHP4-210ENST00000506941 PRR5LQ6MZQ0 368 aa23.38■■□□□ 1.33
NPHP4-210ENST00000506941 ZNF34Q8IZ26 560 aa23.38■■□□□ 1.33
NPHP4-210ENST00000506941 PLBD2Q8NHP8 589 aa23.38■■□□□ 1.33
NPHP4-210ENST00000506941 STK31Q9BXU1 1019 aa23.38■■□□□ 1.33
NPHP4-210ENST00000506941 ANKRD13DQ6ZTN6 518 aa23.37■■□□□ 1.33
NPHP4-210ENST00000506941 G2E3Q7L622 706 aa23.37■■□□□ 1.33
NPHP4-210ENST00000506941 CCDC24Q8N4L8 307 aa23.37■■□□□ 1.33
NPHP4-210ENST00000506941 ARFGEF1Q9Y6D6 1849 aa23.37■■□□□ 1.33
NPHP4-210ENST00000506941 SLC4A2P04920 1241 aa23.36■■□□□ 1.33
NPHP4-210ENST00000506941 NBPF5PQ86XG9 351 aaPredicted RBP23.35■■□□□ 1.33
NPHP4-210ENST00000506941 CNBD1Q8NA66 436 aa23.35■■□□□ 1.33
NPHP4-210ENST00000506941 DDX60Q8IY21 1712 aaKnown RBP23.35■■□□□ 1.33
NPHP4-210ENST00000506941 ZBED9Q6R2W3 1325 aa23.34■■□□□ 1.33
NPHP4-210ENST00000506941 FAM177BA6PVY3 158 aa23.34■■□□□ 1.33
NPHP4-210ENST00000506941 ADCY9O60503 1353 aa23.33■■□□□ 1.33
NPHP4-210ENST00000506941 IBTKQ9P2D0 1353 aaPredicted RBP23.33■■□□□ 1.33
NPHP4-210ENST00000506941 A0A0G2JLW4 131 aa23.33■■□□□ 1.33
NPHP4-210ENST00000506941 TGFB2P61812 414 aa23.33■■□□□ 1.33
NPHP4-210ENST00000506941 TCIRG1Q13488 830 aa23.33■■□□□ 1.33
NPHP4-210ENST00000506941 DPEP1P16444 411 aa23.32■■□□□ 1.32
NPHP4-210ENST00000506941 SUSD4Q5VX71 490 aa23.32■■□□□ 1.32
NPHP4-210ENST00000506941 ABCC12Q96J65 1359 aa23.31■■□□□ 1.32
NPHP4-210ENST00000506941 KCNA3P22001 575 aa23.31■■□□□ 1.32
NPHP4-210ENST00000506941 CHRNA5P30532 468 aa23.31■■□□□ 1.32
NPHP4-210ENST00000506941 FLIIQ13045 1269 aa23.31■■□□□ 1.32
NPHP4-210ENST00000506941 HSP90AB3PQ58FF7 597 aa23.31■■□□□ 1.32
NPHP4-210ENST00000506941 RIC3Q7Z5B4 369 aa23.31■■□□□ 1.32
NPHP4-210ENST00000506941 CHD4Q14839 1912 aa23.31■■□□□ 1.32
NPHP4-210ENST00000506941 NPHP1O15259 732 aa23.3■■□□□ 1.32
NPHP4-210ENST00000506941 NTSR2O95665 410 aa23.3■■□□□ 1.32
NPHP4-210ENST00000506941 ST5P78524 1137 aa23.3■■□□□ 1.32
NPHP4-210ENST00000506941 TPTE2Q6XPS3 522 aa23.3■■□□□ 1.32
NPHP4-210ENST00000506941 NLRP10Q86W26 655 aa23.3■■□□□ 1.32
NPHP4-210ENST00000506941 WWC3Q9ULE0 1092 aa23.3■■□□□ 1.32
NPHP4-210ENST00000506941 ATP5J2-PTCD1G3V325 749 aa23.29■■□□□ 1.32
NPHP4-210ENST00000506941 DDX58O95786 925 aaKnown RBP23.29■■□□□ 1.32
NPHP4-210ENST00000506941 PARP10Q53GL7 1025 aa23.29■■□□□ 1.32
NPHP4-210ENST00000506941 NUTM1Q86Y26 1132 aa23.29■■□□□ 1.32
NPHP4-210ENST00000506941 ISCA1Q9BUE6 129 aa23.29■■□□□ 1.32
NPHP4-210ENST00000506941 BRIP1Q9BX63 1249 aa23.29■■□□□ 1.32
NPHP4-210ENST00000506941 PI4KAP2A4QPH2 592 aa23.28■■□□□ 1.32
NPHP4-210ENST00000506941 YBX3P16989 372 aaKnown RBP eCLIP23.28■■□□□ 1.32
NPHP4-210ENST00000506941 ERFEQ4G0M1 354 aa23.28■■□□□ 1.32
NPHP4-210ENST00000506941 KSR2Q6VAB6 950 aa23.28■■□□□ 1.32
NPHP4-210ENST00000506941 PI4KAP1Q8N8J0 262 aa23.28■■□□□ 1.32
NPHP4-210ENST00000506941 ZNF428Q96B54 188 aa23.28■■□□□ 1.32
NPHP4-210ENST00000506941 NYXQ9GZU5 481 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms