RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 CTDP1Q9Y5B0 961 aaPredicted RBP6.32□□□□□ -1.4
USP54-216ENST00000498143 TPRP12270 2363 aaKnown RBP6.32□□□□□ -1.4
USP54-216ENST00000498143 DNAJC2Q99543 621 aaKnown RBP6.32□□□□□ -1.4
USP54-216ENST00000498143 CNTNAP1P78357 1384 aa6.32□□□□□ -1.4
USP54-216ENST00000498143 FARP2O94887 1054 aaPredicted RBP6.32□□□□□ -1.4
USP54-216ENST00000498143 HDAC5Q9UQL6 1122 aa6.32□□□□□ -1.4
USP54-216ENST00000498143 ST20-MTHFSA0A0A6YYL1 179 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 SYNMO15061 1565 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 MTHFSP49914 203 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 HSP90AB4PQ58FF6 505 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 CC2D2BQ6DHV5 1058 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 COLQQ9Y215 455 aaPredicted RBP6.31□□□□□ -1.4
USP54-216ENST00000498143 ERBINQ96RT1 1412 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 BRPF1P55201 1214 aaPredicted RBP6.31□□□□□ -1.4
USP54-216ENST00000498143 CFAP70Q5T0N1 1121 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 ZNF277Q9NRM2 450 aaPredicted RBP6.31□□□□□ -1.4
USP54-216ENST00000498143 CSADQ9Y600 493 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 ASXL1Q8IXJ9 1541 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 SBNO1A3KN83 1393 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 TAF1CQ15572 869 aaPredicted RBP6.31□□□□□ -1.4
USP54-216ENST00000498143 EYA3Q99504 573 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 TBC1D8O95759 1140 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 SMIM5Q71RC9 77 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 CERS3Q8IU89 383 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 GOLGA6L1Q8N7Z2 621 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 ZC3H12CQ9C0D7 883 aaKnown RBP6.31□□□□□ -1.4
USP54-216ENST00000498143 ZFYVE28Q9HCC9 887 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 KCNH4Q9UQ05 1017 aa6.31□□□□□ -1.4
USP54-216ENST00000498143 CLTCQ00610 1675 aaKnown RBP6.31□□□□□ -1.4
USP54-216ENST00000498143 MST1RQ04912 1400 aa6.3□□□□□ -1.4
USP54-216ENST00000498143 IQGAP1P46940 1657 aa6.3□□□□□ -1.4
USP54-216ENST00000498143 PNPLA7Q6ZV29 1317 aa6.3□□□□□ -1.4
USP54-216ENST00000498143 KIF6Q6ZMV9 814 aa6.3□□□□□ -1.4
USP54-216ENST00000498143 PPP4R2Q9NY27 417 aa6.3□□□□□ -1.4
USP54-216ENST00000498143 ZMYND8Q9ULU4 1186 aaPredicted RBP6.3□□□□□ -1.4
USP54-216ENST00000498143 SMCR8Q8TEV9 937 aaPredicted RBP6.3□□□□□ -1.4
USP54-216ENST00000498143 U3KPZ7 1027 aaPredicted RBP6.3□□□□□ -1.4
USP54-216ENST00000498143 BCL9LQ86UU0 1499 aa6.3□□□□□ -1.4
USP54-216ENST00000498143 ALYREFQ86V81 257 aaKnown RBP6.3□□□□□ -1.4
USP54-216ENST00000498143 IFNL2Q8IZJ0 200 aa6.3□□□□□ -1.4
USP54-216ENST00000498143 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.3□□□□□ -1.4
USP54-216ENST00000498143 MRVI1Q9Y6F6 885 aa6.3□□□□□ -1.4
USP54-216ENST00000498143 HNRNPUQ00839 825 aaKnown RBP eCLIP6.29□□□□□ -1.4
USP54-216ENST00000498143 MYH16Q9H6N6 1097 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 DNMT1P26358 1616 aaKnown RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 ZNF530Q6P9A1 599 aaPredicted RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 ZKSCAN4Q969J2 545 aaPredicted RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 TSPYL1Q9H0U9 437 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 ADARB2Q9NS39 739 aaKnown RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 CFAP65Q6ZU64 1925 aaKnown RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 CEP290O15078 2479 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 KDM4AO75164 1064 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 CNGA1P29973 690 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 DPP8Q6V1X1 898 aaPredicted RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 DDX46Q7L014 1031 aaKnown RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 SUGP1Q8IWZ8 645 aaKnown RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 SIRT1Q96EB6 747 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 TRIM47Q96LD4 638 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 TRPM2O94759 1503 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 ABCC5O15440 1437 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 C7orf61Q8IZ16 206 aa6.29□□□□□ -1.4
USP54-216ENST00000498143 FAM177A1Q8N128 213 aaPredicted RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 GLIS2Q9BZE0 524 aaPredicted RBP6.29□□□□□ -1.4
USP54-216ENST00000498143 ZDBF2Q9HCK1 2354 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 ARHGAP23Q9P227 1491 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 CHD8Q9HCK8 2581 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 MFAP1P55081 439 aaKnown RBP6.28□□□□□ -1.4
USP54-216ENST00000498143 USP50Q70EL3 339 aaPredicted RBP6.28□□□□□ -1.4
USP54-216ENST00000498143 NECAB2Q7Z6G3 386 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 PCDH11XQ9BZA7 1347 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 PCDH11YQ9BZA8 1340 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 SEC24BO95487 1268 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 KIAA2012Q0VF49 1180 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 TMEM31Q5JXX7 168 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 FAM50BQ9Y247 325 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 PALLDQ8WX93 1383 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 C3P01024 1663 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 CRB1P82279 1406 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 ANKRD50Q9ULJ7 1429 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 H0YGN5 161 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 ANKIB1Q9P2G1 1089 aa6.28□□□□□ -1.4
USP54-216ENST00000498143 STRCQ7RTU9 1775 aa6.27□□□□□ -1.41
USP54-216ENST00000498143 CCDC66A2RUB6 948 aa6.27□□□□□ -1.41
USP54-216ENST00000498143 CHAF1AQ13111 956 aaPredicted RBP6.27□□□□□ -1.41
USP54-216ENST00000498143 FRMPD1Q5SYB0 1578 aa6.27□□□□□ -1.41
USP54-216ENST00000498143 RBM17Q96I25 401 aaKnown RBP6.27□□□□□ -1.41
USP54-216ENST00000498143 IPO9Q96P70 1041 aaKnown RBP6.27□□□□□ -1.41
USP54-216ENST00000498143 P2RX7Q99572 595 aaKnown RBP6.27□□□□□ -1.41
USP54-216ENST00000498143 ANGEL1Q9UNK9 670 aaKnown RBP6.27□□□□□ -1.41
USP54-216ENST00000498143 GPR25O00155 361 aa6.27□□□□□ -1.41
USP54-216ENST00000498143 MAP3K13O43283 966 aa6.27□□□□□ -1.41
USP54-216ENST00000498143 TBC1D10BQ4KMP7 808 aaPredicted RBP6.27□□□□□ -1.41
USP54-216ENST00000498143 NECTIN2Q92692 538 aa6.27□□□□□ -1.41
USP54-216ENST00000498143 MASTLQ96GX5 879 aa6.27□□□□□ -1.41
USP54-216ENST00000498143 RAD17O75943 681 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 USHBP1Q8N6Y0 703 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 PIEZO1Q92508 2521 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 IARSP41252 1262 aaKnown RBP6.26□□□□□ -1.41
USP54-216ENST00000498143 CDCA8Q53HL2 280 aa6.26□□□□□ -1.41
USP54-216ENST00000498143 USPL1Q5W0Q7 1092 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms