RNA–Protein interactions for RNA: ENST00000497368.1

UBE3C-208, Transcript of ubiquitin protein ligase E3C, human

TSL 2

Gene UBE3C, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE3C-208	ENST00000497368	GC	P02774	474 aa		7.94	□□□□□ -1.14
UBE3C-208	ENST00000497368	SRPK2	P78362	688 aa	Known RBP	7.94	□□□□□ -1.14
UBE3C-208	ENST00000497368	CCDC9	Q9Y3X0	531 aa	Known RBP	7.94	□□□□□ -1.14
UBE3C-208	ENST00000497368	TOGARAM1	Q9Y4F4	1720 aa		7.94	□□□□□ -1.14
UBE3C-208	ENST00000497368		A0A1W2PP64	1363 aa		7.94	□□□□□ -1.14
UBE3C-208	ENST00000497368	TNS2	Q63HR2	1409 aa		7.94	□□□□□ -1.14
UBE3C-208	ENST00000497368	QSER1	Q2KHR3	1735 aa		7.93	□□□□□ -1.14
UBE3C-208	ENST00000497368	RGS20	O76081	388 aa		7.93	□□□□□ -1.14
UBE3C-208	ENST00000497368	NEUROD1	Q13562	356 aa		7.93	□□□□□ -1.14
UBE3C-208	ENST00000497368	PTF1A	Q7RTS3	328 aa		7.93	□□□□□ -1.14
UBE3C-208	ENST00000497368	ABTB2	Q8N961	1025 aa		7.93	□□□□□ -1.14
UBE3C-208	ENST00000497368	TESK2	Q96S53	571 aa		7.93	□□□□□ -1.14
UBE3C-208	ENST00000497368	SPSB2	Q99619	263 aa		7.93	□□□□□ -1.14
UBE3C-208	ENST00000497368	STRN4	Q9NRL3	753 aa		7.93	□□□□□ -1.14
UBE3C-208	ENST00000497368	LY75	O60449	1722 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	HOXA2	O43364	376 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	GUCA2A	Q02747	115 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	PDE4D	Q08499	809 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	GRIPAP1	Q4V328	841 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	RNF19B	Q6ZMZ0	732 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	ARHGEF25	Q86VW2	580 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	THAP11	Q96EK4	314 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	CAMKK2	Q96RR4	588 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	EVC2	Q86UK5	1308 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	OVOS2	A0A0G2JMS6	1433 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	BCL9	O00512	1426 aa		7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	EDC4	Q6P2E9	1401 aa	Known RBP	7.92	□□□□□ -1.14
UBE3C-208	ENST00000497368	RNF223	E7ERA6	249 aa		7.91	□□□□□ -1.14
UBE3C-208	ENST00000497368	PPEF1	O14829	653 aa	Predicted RBP	7.91	□□□□□ -1.14
UBE3C-208	ENST00000497368	MS4A1	P11836	297 aa		7.91	□□□□□ -1.14
UBE3C-208	ENST00000497368	GGCX	P38435	758 aa		7.91	□□□□□ -1.14
UBE3C-208	ENST00000497368	EZH2	Q15910	746 aa	Known RBP	7.91	□□□□□ -1.14
UBE3C-208	ENST00000497368	NUTM1	Q86Y26	1132 aa		7.91	□□□□□ -1.14
UBE3C-208	ENST00000497368	SLC6A16	Q9GZN6	736 aa		7.91	□□□□□ -1.14
UBE3C-208	ENST00000497368	WDR17	Q8IZU2	1322 aa		7.91	□□□□□ -1.14
UBE3C-208	ENST00000497368	KTN1	Q86UP2	1357 aa	Known RBP	7.91	□□□□□ -1.14
UBE3C-208	ENST00000497368	PKD1L3	Q7Z443	1732 aa		7.9	□□□□□ -1.14
UBE3C-208	ENST00000497368	TTC21A	Q8NDW8	1320 aa		7.9	□□□□□ -1.14
UBE3C-208	ENST00000497368	FMNL1	O95466	1100 aa	Predicted RBP	7.9	□□□□□ -1.14
UBE3C-208	ENST00000497368	USP46	P62068	366 aa		7.9	□□□□□ -1.14
UBE3C-208	ENST00000497368	BRICD5	Q6PL45	260 aa		7.9	□□□□□ -1.14
UBE3C-208	ENST00000497368	NLRP13	Q86W25	1043 aa		7.9	□□□□□ -1.14
UBE3C-208	ENST00000497368	NME9	Q86XW9	330 aa		7.9	□□□□□ -1.14
UBE3C-208	ENST00000497368	BEGAIN	Q9BUH8	593 aa		7.9	□□□□□ -1.14
UBE3C-208	ENST00000497368	USP35	Q9P2H5	1018 aa		7.9	□□□□□ -1.14
UBE3C-208	ENST00000497368	PARD3	Q8TEW0	1356 aa		7.89	□□□□□ -1.15
UBE3C-208	ENST00000497368	TRIM37	O94972	964 aa		7.89	□□□□□ -1.15
UBE3C-208	ENST00000497368	MYT1	Q01538	1121 aa		7.89	□□□□□ -1.15
UBE3C-208	ENST00000497368	TCP11L2	Q8N4U5	519 aa		7.89	□□□□□ -1.15
UBE3C-208	ENST00000497368	FAM160A2	Q8N612	972 aa	Predicted RBP	7.89	□□□□□ -1.15
UBE3C-208	ENST00000497368	SPIRE2	Q8WWL2	714 aa		7.89	□□□□□ -1.15
UBE3C-208	ENST00000497368	PRKD2	Q9BZL6	878 aa		7.89	□□□□□ -1.15
UBE3C-208	ENST00000497368	PRDM9	Q9NQV7	894 aa		7.89	□□□□□ -1.15
UBE3C-208	ENST00000497368	MEGF6	O75095	1541 aa		7.88	□□□□□ -1.15
UBE3C-208	ENST00000497368	TONSL	Q96HA7	1378 aa		7.88	□□□□□ -1.15
UBE3C-208	ENST00000497368	BAG6	P46379	1132 aa		7.88	□□□□□ -1.15
UBE3C-208	ENST00000497368	MARCH10	Q8NA82	808 aa	Predicted RBP	7.88	□□□□□ -1.15
UBE3C-208	ENST00000497368	TAF1L	Q8IZX4	1826 aa		7.87	□□□□□ -1.15
UBE3C-208	ENST00000497368	R3HDM1	Q15032	1099 aa	Known RBP	7.87	□□□□□ -1.15
UBE3C-208	ENST00000497368	CARD11	Q9BXL7	1154 aa		7.87	□□□□□ -1.15
UBE3C-208	ENST00000497368	SLC12A5	Q9H2X9	1139 aa		7.87	□□□□□ -1.15
UBE3C-208	ENST00000497368	THRAP3	Q9Y2W1	955 aa	Known RBP	7.87	□□□□□ -1.15
UBE3C-208	ENST00000497368	SALL2	Q9Y467	1007 aa	Predicted RBP	7.87	□□□□□ -1.15
UBE3C-208	ENST00000497368	UTRN	P46939	3433 aa		7.87	□□□□□ -1.15
UBE3C-208	ENST00000497368	ITGB4	P16144	1822 aa		7.87	□□□□□ -1.15
UBE3C-208	ENST00000497368	NCAPD2	Q15021	1401 aa		7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368	NSD2	O96028	1365 aa		7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368	USP47	Q96K76	1375 aa		7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368	MOXD2P	A6NHM9	499 aa		7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368	NDUFV2	P19404	249 aa		7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368		Q3C1V9	767 aa		7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368	FAM196A	Q6ZSG2	479 aa		7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368	ANKLE1	Q8NAG6	615 aa		7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368	SYMPK	Q92797	1274 aa	Known RBP	7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368	EMID1	Q96A84	441 aa	Predicted RBP	7.86	□□□□□ -1.15
UBE3C-208	ENST00000497368	ANKRD36B	Q8N2N9	1353 aa		7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	MAP2	P11137	1827 aa	Known RBP	7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	ZBTB7C	A1YPR0	619 aa		7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	FDX1	P10109	184 aa		7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	PLA2G2C	Q5R387	149 aa		7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	CARD10	Q9BWT7	1032 aa		7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	TBC1D2	Q9BYX2	928 aa		7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	PDGFD	Q9GZP0	370 aa	Predicted RBP	7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	PCDHGC3	Q9UN70	934 aa		7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	C5	P01031	1676 aa		7.85	□□□□□ -1.15
UBE3C-208	ENST00000497368	CCDC7	Q96M83	1385 aa		7.84	□□□□□ -1.15
UBE3C-208	ENST00000497368	ST20-MTHFS	A0A0A6YYL1	179 aa		7.84	□□□□□ -1.15
UBE3C-208	ENST00000497368	FBLN1	P23142	703 aa		7.84	□□□□□ -1.15
UBE3C-208	ENST00000497368	SF3B2	Q13435	895 aa	Known RBP	7.84	□□□□□ -1.15
UBE3C-208	ENST00000497368	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	7.84	□□□□□ -1.15
UBE3C-208	ENST00000497368	GPBP1L1	Q9HC44	474 aa	Predicted RBP	7.84	□□□□□ -1.15
UBE3C-208	ENST00000497368	NINL	Q9Y2I6	1382 aa		7.84	□□□□□ -1.16
UBE3C-208	ENST00000497368	APBA3	O96018	575 aa		7.83	□□□□□ -1.16
UBE3C-208	ENST00000497368	EVA1C	P58658	441 aa		7.83	□□□□□ -1.16
UBE3C-208	ENST00000497368	MSS51	Q4VC12	460 aa		7.83	□□□□□ -1.16
UBE3C-208	ENST00000497368	TOM1L2	Q6ZVM7	507 aa		7.83	□□□□□ -1.16
UBE3C-208	ENST00000497368	PUS7	Q96PZ0	661 aa	Known RBP	7.83	□□□□□ -1.16
UBE3C-208	ENST00000497368	USB1	Q9BQ65	265 aa	Known RBP	7.83	□□□□□ -1.16
UBE3C-208	ENST00000497368		V9GY48	417 aa	Predicted RBP	7.83	□□□□□ -1.16
UBE3C-208	ENST00000497368	MAP3K19	Q56UN5	1328 aa		7.82	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms