RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 PRKRIP1Q9H875 184 aaPredicted RBP16.73■□□□□ 0.27
PTPRF-214ENST00000496043 ERVV-1B6SEH8 477 aa16.72■□□□□ 0.27
PTPRF-214ENST00000496043 ZEB1P37275 1124 aaPredicted RBP16.72■□□□□ 0.27
PTPRF-214ENST00000496043 HLFQ16534 295 aa16.72■□□□□ 0.27
PTPRF-214ENST00000496043 CNKSR1Q969H4 720 aa16.72■□□□□ 0.27
PTPRF-214ENST00000496043 ADAMTS8Q9UP79 889 aa16.72■□□□□ 0.27
PTPRF-214ENST00000496043 BRCA1P38398 1863 aaKnown RBP16.71■□□□□ 0.27
PTPRF-214ENST00000496043 MYL6BP14649 208 aa16.71■□□□□ 0.27
PTPRF-214ENST00000496043 LMNB1P20700 586 aa16.71■□□□□ 0.27
PTPRF-214ENST00000496043 GTF2E1P29083 439 aaPredicted RBP16.71■□□□□ 0.27
PTPRF-214ENST00000496043 STYK1Q6J9G0 422 aa16.71■□□□□ 0.27
PTPRF-214ENST00000496043 MASTLQ96GX5 879 aa16.71■□□□□ 0.27
PTPRF-214ENST00000496043 ARFGEF1Q9Y6D6 1849 aa16.7■□□□□ 0.26
PTPRF-214ENST00000496043 FAM177BA6PVY3 158 aa16.7■□□□□ 0.26
PTPRF-214ENST00000496043 C21orf2O43822 256 aa16.7■□□□□ 0.26
PTPRF-214ENST00000496043 SRGNP10124 158 aa16.7■□□□□ 0.26
PTPRF-214ENST00000496043 EIF2S2P20042 333 aaKnown RBP16.7■□□□□ 0.26
PTPRF-214ENST00000496043 RASSF7Q02833 373 aa16.7■□□□□ 0.26
PTPRF-214ENST00000496043 KIF6Q6ZMV9 814 aa16.7■□□□□ 0.26
PTPRF-214ENST00000496043 ZNF219Q9P2Y4 722 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-214ENST00000496043 KDM2BQ8NHM5 1336 aa16.7■□□□□ 0.26
PTPRF-214ENST00000496043 DLG5Q8TDM6 1919 aa16.69■□□□□ 0.26
PTPRF-214ENST00000496043 ERBB4Q15303 1308 aa16.69■□□□□ 0.26
PTPRF-214ENST00000496043 MAP3K15Q6ZN16 1313 aa16.69■□□□□ 0.26
PTPRF-214ENST00000496043 TOMM70O94826 608 aa16.68■□□□□ 0.26
PTPRF-214ENST00000496043 TTLL7Q6ZT98 887 aa16.68■□□□□ 0.26
PTPRF-214ENST00000496043 NMRK2Q9NPI5 230 aa16.68■□□□□ 0.26
PTPRF-214ENST00000496043 LAS1LQ9Y4W2 734 aaKnown RBP16.68■□□□□ 0.26
PTPRF-214ENST00000496043 SCN7AQ01118 1682 aa16.67■□□□□ 0.26
PTPRF-214ENST00000496043 KLRG2A4D1S0 409 aaPredicted RBP16.67■□□□□ 0.26
PTPRF-214ENST00000496043 CHL1O00533 1208 aa16.67■□□□□ 0.26
PTPRF-214ENST00000496043 NPR1P16066 1061 aa16.67■□□□□ 0.26
PTPRF-214ENST00000496043 NYXQ9GZU5 481 aa16.67■□□□□ 0.26
PTPRF-214ENST00000496043 TRIM35Q9UPQ4 493 aa16.67■□□□□ 0.26
PTPRF-214ENST00000496043 NFKBIEO00221 500 aa16.66■□□□□ 0.26
PTPRF-214ENST00000496043 HSPA6P17066 643 aa16.66■□□□□ 0.26
PTPRF-214ENST00000496043 SOGA3Q5TF21 947 aa16.66■□□□□ 0.26
PTPRF-214ENST00000496043 C16orf71Q8IYS4 520 aaPredicted RBP16.66■□□□□ 0.26
PTPRF-214ENST00000496043 ZBTB3Q9H5J0 574 aa16.66■□□□□ 0.26
PTPRF-214ENST00000496043 RRAGCQ9HB90 399 aa16.66■□□□□ 0.26
PTPRF-214ENST00000496043 ZC3H4Q9UPT8 1303 aaKnown RBP16.66■□□□□ 0.26
PTPRF-214ENST00000496043 ALDH1B1P30837 517 aa16.65■□□□□ 0.26
PTPRF-214ENST00000496043 PRELPP51888 382 aa16.65■□□□□ 0.26
PTPRF-214ENST00000496043 PDIA6Q15084 440 aa16.65■□□□□ 0.26
PTPRF-214ENST00000496043 PRPF40BQ6NWY9 871 aaKnown RBP16.65■□□□□ 0.26
PTPRF-214ENST00000496043 GIGYF2Q6Y7W6 1299 aaKnown RBP16.65■□□□□ 0.26
PTPRF-214ENST00000496043 GLTPD2A6NH11 291 aa16.64■□□□□ 0.25
PTPRF-214ENST00000496043 DPY19L2Q6NUT2 758 aa16.64■□□□□ 0.25
PTPRF-214ENST00000496043 KDM3BQ7LBC6 1761 aa16.64■□□□□ 0.25
PTPRF-214ENST00000496043 GPTP24298 496 aa16.63■□□□□ 0.25
PTPRF-214ENST00000496043 ZNF34Q8IZ26 560 aa16.63■□□□□ 0.25
PTPRF-214ENST00000496043 C7orf43Q8WVR3 580 aa16.63■□□□□ 0.25
PTPRF-214ENST00000496043 NECTIN2Q92692 538 aa16.63■□□□□ 0.25
PTPRF-214ENST00000496043 BCORQ6W2J9 1755 aa16.62■□□□□ 0.25
PTPRF-214ENST00000496043 ERFEQ4G0M1 354 aa16.62■□□□□ 0.25
PTPRF-214ENST00000496043 SUSD4Q5VX71 490 aa16.62■□□□□ 0.25
PTPRF-214ENST00000496043 LRP10Q7Z4F1 713 aa16.62■□□□□ 0.25
PTPRF-214ENST00000496043 PPP1R42Q7Z4L9 355 aa16.62■□□□□ 0.25
PTPRF-214ENST00000496043 NUTM1Q86Y26 1132 aa16.62■□□□□ 0.25
PTPRF-214ENST00000496043 RBM46Q8TBY0 533 aaKnown RBP16.62■□□□□ 0.25
PTPRF-214ENST00000496043 TAOK3Q9H2K8 898 aa16.62■□□□□ 0.25
PTPRF-214ENST00000496043 ANKRD31Q8N7Z5 1873 aa16.62■□□□□ 0.25
PTPRF-214ENST00000496043 LTBP3Q9NS15 1303 aa16.62■□□□□ 0.25
PTPRF-214ENST00000496043 APAF1O14727 1248 aa16.61■□□□□ 0.25
PTPRF-214ENST00000496043 ANXA1P04083 346 aa16.61■□□□□ 0.25
PTPRF-214ENST00000496043 AIMP1Q12904 312 aaKnown RBP16.61■□□□□ 0.25
PTPRF-214ENST00000496043 PARP10Q53GL7 1025 aa16.61■□□□□ 0.25
PTPRF-214ENST00000496043 COPS6Q7L5N1 327 aa16.61■□□□□ 0.25
PTPRF-214ENST00000496043 CFAP44Q96MT7 982 aa16.61■□□□□ 0.25
PTPRF-214ENST00000496043 DDX21Q9NR30 783 aaKnown RBP eCLIP16.61■□□□□ 0.25
PTPRF-214ENST00000496043 DLEC1Q9Y238 1755 aa16.61■□□□□ 0.25
PTPRF-214ENST00000496043 VEGFAP15692 232 aaPredicted RBP16.6■□□□□ 0.25
PTPRF-214ENST00000496043 PROSER3Q2NL68 480 aa16.6■□□□□ 0.25
PTPRF-214ENST00000496043 CCDC93Q567U6 631 aa16.6■□□□□ 0.25
PTPRF-214ENST00000496043 RTKN2Q8IZC4 609 aa16.6■□□□□ 0.25
PTPRF-214ENST00000496043 SBF1O95248 1867 aa16.6■□□□□ 0.25
PTPRF-214ENST00000496043 LAMB4A4D0S4 1761 aa16.59■□□□□ 0.25
PTPRF-214ENST00000496043 HOXB7P09629 217 aa16.59■□□□□ 0.25
PTPRF-214ENST00000496043 CALD1Q05682 793 aaKnown RBP16.59■□□□□ 0.25
PTPRF-214ENST00000496043 FSTL1Q12841 308 aa16.59■□□□□ 0.25
PTPRF-214ENST00000496043 KRT24Q2M2I5 525 aa16.59■□□□□ 0.25
PTPRF-214ENST00000496043 HSP90AB3PQ58FF7 597 aa16.59■□□□□ 0.25
PTPRF-214ENST00000496043 XAGE3Q8WTP9 111 aa16.59■□□□□ 0.25
PTPRF-214ENST00000496043 UBN2Q6ZU65 1347 aa16.59■□□□□ 0.25
PTPRF-214ENST00000496043 APLP1P51693 650 aa16.58■□□□□ 0.24
PTPRF-214ENST00000496043 CRY2Q49AN0 593 aa16.58■□□□□ 0.24
PTPRF-214ENST00000496043 RPGRQ92834 1020 aaKnown RBP16.58■□□□□ 0.24
PTPRF-214ENST00000496043 UTP14AQ9BVJ6 771 aaKnown RBP16.58■□□□□ 0.24
PTPRF-214ENST00000496043 IBTKQ9P2D0 1353 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-214ENST00000496043 ZNF316A6NFI3 1004 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-214ENST00000496043 NTSR2O95665 410 aa16.57■□□□□ 0.24
PTPRF-214ENST00000496043 HOXA10P31260 410 aaPredicted RBP16.57■□□□□ 0.24
PTPRF-214ENST00000496043 FKBP4Q02790 459 aaKnown RBP eCLIP16.57■□□□□ 0.24
PTPRF-214ENST00000496043 SLC10A5Q5PT55 438 aa16.57■□□□□ 0.24
PTPRF-214ENST00000496043 HDGFL1Q5TGJ6 251 aa16.57■□□□□ 0.24
PTPRF-214ENST00000496043 DUSP27Q5VZP5 1158 aa16.57■□□□□ 0.24
PTPRF-214ENST00000496043 RBM17Q96I25 401 aaKnown RBP16.57■□□□□ 0.24
PTPRF-214ENST00000496043 NLRP3Q96P20 1036 aa16.57■□□□□ 0.24
PTPRF-214ENST00000496043 SLX4Q8IY92 1834 aa16.56■□□□□ 0.24
PTPRF-214ENST00000496043 ZNF853P0CG23 659 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms