RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 MAP3K15Q6ZN16 1313 aa20.62■□□□□ 0.89
LIME1-209ENST00000494776 A0A0G2JLW4 131 aa20.62■□□□□ 0.89
LIME1-209ENST00000494776 ERVV-1B6SEH8 477 aa20.62■□□□□ 0.89
LIME1-209ENST00000494776 PDIA6Q15084 440 aa20.62■□□□□ 0.89
LIME1-209ENST00000494776 PROSER3Q2NL68 480 aa20.62■□□□□ 0.89
LIME1-209ENST00000494776 DDX21Q9NR30 783 aaKnown RBP eCLIP20.62■□□□□ 0.89
LIME1-209ENST00000494776 CHPF2Q9P2E5 772 aa20.62■□□□□ 0.89
LIME1-209ENST00000494776 RGL2O15211 777 aa20.61■□□□□ 0.89
LIME1-209ENST00000494776 AIMP1Q12904 312 aaKnown RBP20.61■□□□□ 0.89
LIME1-209ENST00000494776 HLFQ16534 295 aa20.61■□□□□ 0.89
LIME1-209ENST00000494776 ZBTB3Q9H5J0 574 aa20.61■□□□□ 0.89
LIME1-209ENST00000494776 DBF4Q9UBU7 674 aaPredicted RBP20.61■□□□□ 0.89
LIME1-209ENST00000494776 NIP7Q9Y221 180 aaKnown RBP eCLIP20.61■□□□□ 0.89
LIME1-209ENST00000494776 BCORQ6W2J9 1755 aa20.61■□□□□ 0.89
LIME1-209ENST00000494776 DPEP1P16444 411 aa20.6■□□□□ 0.89
LIME1-209ENST00000494776 MIER1Q8N108 512 aa20.6■□□□□ 0.89
LIME1-209ENST00000494776 C8orf58Q8NAV2 365 aa20.6■□□□□ 0.89
LIME1-209ENST00000494776 CHMP4AQ9BY43 222 aa20.6■□□□□ 0.89
LIME1-209ENST00000494776 PXDNLA1KZ92 1463 aa20.59■□□□□ 0.89
LIME1-209ENST00000494776 COPS6Q7L5N1 327 aa20.59■□□□□ 0.89
LIME1-209ENST00000494776 NBPF5PQ86XG9 351 aaPredicted RBP20.59■□□□□ 0.89
LIME1-209ENST00000494776 CNBD1Q8NA66 436 aa20.59■□□□□ 0.89
LIME1-209ENST00000494776 XAGE3Q8WTP9 111 aa20.59■□□□□ 0.89
LIME1-209ENST00000494776 FAM177BA6PVY3 158 aa20.58■□□□□ 0.89
LIME1-209ENST00000494776 GRIN3BO60391 1043 aa20.58■□□□□ 0.89
LIME1-209ENST00000494776 YBX3P16989 372 aaKnown RBP eCLIP20.58■□□□□ 0.89
LIME1-209ENST00000494776 ST5P78524 1137 aa20.58■□□□□ 0.89
LIME1-209ENST00000494776 KIF13BQ9NQT8 1826 aa20.57■□□□□ 0.88
LIME1-209ENST00000494776 PRR5LQ6MZQ0 368 aa20.57■□□□□ 0.88
LIME1-209ENST00000494776 LRP10Q7Z4F1 713 aa20.57■□□□□ 0.88
LIME1-209ENST00000494776 CCDC24Q8N4L8 307 aa20.57■□□□□ 0.88
LIME1-209ENST00000494776 HYPKQ9NX55 129 aa20.57■□□□□ 0.88
LIME1-209ENST00000494776 AFDNP55196 1824 aaKnown RBP20.56■□□□□ 0.88
LIME1-209ENST00000494776 GTF2E1P29083 439 aaPredicted RBP20.56■□□□□ 0.88
LIME1-209ENST00000494776 CHRNA5P30532 468 aa20.56■□□□□ 0.88
LIME1-209ENST00000494776 GOLGA2Q08379 1002 aa20.56■□□□□ 0.88
LIME1-209ENST00000494776 CCDC30Q5VVM6 783 aa20.56■□□□□ 0.88
LIME1-209ENST00000494776 TPTE2Q6XPS3 522 aa20.56■□□□□ 0.88
LIME1-209ENST00000494776 TSPYL6Q8N831 410 aa20.56■□□□□ 0.88
LIME1-209ENST00000494776 BCS1LQ9Y276 419 aa20.56■□□□□ 0.88
LIME1-209ENST00000494776 FANCIQ9NVI1 1328 aa20.55■□□□□ 0.88
LIME1-209ENST00000494776 N4BP2Q86UW6 1770 aaPredicted RBP20.55■□□□□ 0.88
LIME1-209ENST00000494776 GPTP24298 496 aa20.55■□□□□ 0.88
LIME1-209ENST00000494776 TWISTNBQ3B726 338 aaPredicted RBP20.55■□□□□ 0.88
LIME1-209ENST00000494776 GIGYF2Q6Y7W6 1299 aaKnown RBP20.55■□□□□ 0.88
LIME1-209ENST00000494776 MYH16Q9H6N6 1097 aa20.55■□□□□ 0.88
LIME1-209ENST00000494776 PIM2Q9P1W9 311 aa20.55■□□□□ 0.88
LIME1-209ENST00000494776 NRXN2Q9P2S2 1712 aa20.55■□□□□ 0.88
LIME1-209ENST00000494776 H0YIN7 160 aa20.54■□□□□ 0.88
LIME1-209ENST00000494776 PDE6BP35913 854 aa20.54■□□□□ 0.88
LIME1-209ENST00000494776 C2CD5Q86YS7 1000 aa20.54■□□□□ 0.88
LIME1-209ENST00000494776 BRIP1Q9BX63 1249 aa20.54■□□□□ 0.88
LIME1-209ENST00000494776 HSP90AB3PQ58FF7 597 aa20.53■□□□□ 0.88
LIME1-209ENST00000494776 STK31Q9BXU1 1019 aa20.53■□□□□ 0.88
LIME1-209ENST00000494776 NYXQ9GZU5 481 aa20.53■□□□□ 0.88
LIME1-209ENST00000494776 ATP10DQ9P241 1426 aa20.53■□□□□ 0.88
LIME1-209ENST00000494776 KCNA3P22001 575 aa20.52■□□□□ 0.88
LIME1-209ENST00000494776 DALRD3Q5D0E6 543 aaKnown RBP20.52■□□□□ 0.88
LIME1-209ENST00000494776 ANKRD13DQ6ZTN6 518 aa20.52■□□□□ 0.88
LIME1-209ENST00000494776 PDZRN3Q9UPQ7 1066 aa20.52■□□□□ 0.88
LIME1-209ENST00000494776 EXOSC9Q06265 439 aaKnown RBP20.51■□□□□ 0.87
LIME1-209ENST00000494776 ZNF34Q8IZ26 560 aa20.51■□□□□ 0.87
LIME1-209ENST00000494776 PLBD2Q8NHP8 589 aa20.51■□□□□ 0.87
LIME1-209ENST00000494776 SPINK5Q9NQ38 1064 aaPredicted RBP20.51■□□□□ 0.87
LIME1-209ENST00000494776 KIAA1551Q9HCM1 1747 aa20.5■□□□□ 0.87
LIME1-209ENST00000494776 TCERG1O14776 1098 aaKnown RBP20.5■□□□□ 0.87
LIME1-209ENST00000494776 PARP10Q53GL7 1025 aa20.5■□□□□ 0.87
LIME1-209ENST00000494776 PPP1R42Q7Z4L9 355 aa20.5■□□□□ 0.87
LIME1-209ENST00000494776 PHAXQ9H814 394 aaKnown RBP20.5■□□□□ 0.87
LIME1-209ENST00000494776 NUP98P52948 1817 aa20.5■□□□□ 0.87
LIME1-209ENST00000494776 SUSD4Q5VX71 490 aa20.49■□□□□ 0.87
LIME1-209ENST00000494776 RIC3Q7Z5B4 369 aa20.49■□□□□ 0.87
LIME1-209ENST00000494776 ZNF622Q969S3 477 aaKnown RBP eCLIP20.49■□□□□ 0.87
LIME1-209ENST00000494776 UBN2Q6ZU65 1347 aa20.49■□□□□ 0.87
LIME1-209ENST00000494776 ZNF521Q96K83 1311 aa20.49■□□□□ 0.87
LIME1-209ENST00000494776 TCIRG1Q13488 830 aa20.48■□□□□ 0.87
LIME1-209ENST00000494776 NUTM1Q86Y26 1132 aa20.48■□□□□ 0.87
LIME1-209ENST00000494776 UTRNP46939 3433 aa20.47■□□□□ 0.87
LIME1-209ENST00000494776 CHD4Q14839 1912 aa20.47■□□□□ 0.87
LIME1-209ENST00000494776 DDX58O95786 925 aaKnown RBP20.47■□□□□ 0.87
LIME1-209ENST00000494776 TTLL6Q8N841 843 aa20.47■□□□□ 0.87
LIME1-209ENST00000494776 UTP14AQ9BVJ6 771 aaKnown RBP20.47■□□□□ 0.87
LIME1-209ENST00000494776 E9PSI1 815 aa20.46■□□□□ 0.87
LIME1-209ENST00000494776 ERFEQ4G0M1 354 aa20.46■□□□□ 0.87
LIME1-209ENST00000494776 ARHGAP27Q6ZUM4 889 aa20.46■□□□□ 0.87
LIME1-209ENST00000494776 VAMP4O75379 141 aa20.45■□□□□ 0.86
LIME1-209ENST00000494776 SLC4A2P04920 1241 aa20.45■□□□□ 0.86
LIME1-209ENST00000494776 ZNF784Q8NCA9 323 aaPredicted RBP20.45■□□□□ 0.86
LIME1-209ENST00000494776 IBTKQ9P2D0 1353 aaPredicted RBP20.45■□□□□ 0.86
LIME1-209ENST00000494776 NTSR2O95665 410 aa20.44■□□□□ 0.86
LIME1-209ENST00000494776 NLRP10Q86W26 655 aa20.44■□□□□ 0.86
LIME1-209ENST00000494776 MASTLQ96GX5 879 aa20.44■□□□□ 0.86
LIME1-209ENST00000494776 GOLGB1Q14789 3259 aaKnown RBP20.44■□□□□ 0.86
LIME1-209ENST00000494776 ANKRD31Q8N7Z5 1873 aa20.43■□□□□ 0.86
LIME1-209ENST00000494776 ATP5J2-PTCD1G3V325 749 aa20.43■□□□□ 0.86
LIME1-209ENST00000494776 SRGNP10124 158 aa20.43■□□□□ 0.86
LIME1-209ENST00000494776 STYK1Q6J9G0 422 aa20.43■□□□□ 0.86
LIME1-209ENST00000494776 CNKSR1Q969H4 720 aa20.43■□□□□ 0.86
LIME1-209ENST00000494776 TRMT112Q9UI30 125 aaKnown RBP20.43■□□□□ 0.86
LIME1-209ENST00000494776 NPR1P16066 1061 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms