RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 KCTD15Q96SI1 283 aaPredicted RBP8.03□□□□□ -1.12
PTCD3-219ENST00000494323 CHIC2Q9UKJ5 165 aa8.03□□□□□ -1.12
PTCD3-219ENST00000494323 LRRC7Q96NW7 1537 aa8.03□□□□□ -1.12
PTCD3-219ENST00000494323 LRRC9Q6ZRR7 1453 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 USP17L5A8MUK1 530 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 TERTO14746 1132 aaKnown RBP8.02□□□□□ -1.13
PTCD3-219ENST00000494323 RFX1P22670 979 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 NFX1Q12986 1120 aaKnown RBP8.02□□□□□ -1.13
PTCD3-219ENST00000494323 C6orf118Q5T5N4 469 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 MEIOBQ8N635 442 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 PLPP7Q8NBV4 271 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 PGPEP1Q9NXJ5 209 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 RGS17Q9UGC6 210 aaPredicted RBP8.02□□□□□ -1.13
PTCD3-219ENST00000494323 EID1Q9Y6B2 187 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 ALKQ9UM73 1620 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 ABCC3O15438 1527 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 IQGAP1P46940 1657 aa8.02□□□□□ -1.13
PTCD3-219ENST00000494323 ARHGEF5Q12774 1597 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 USP17L3A6NCW0 530 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 USP17L4A6NCW7 530 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 DHX9Q08211 1270 aaKnown RBP8.01□□□□□ -1.13
PTCD3-219ENST00000494323 IDI1Q13907 227 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 PPP1R26Q5T8A7 1209 aaPredicted RBP8.01□□□□□ -1.13
PTCD3-219ENST00000494323 USP17L2Q6R6M4 530 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 USP17L1Q7RTZ2 530 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 LINC00528Q8N1L1 170 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 RETREG2Q8NC44 543 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 SLC26A8Q96RN1 970 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 TRAIPQ9BWF2 469 aa8.01□□□□□ -1.13
PTCD3-219ENST00000494323 ACIN1Q9UKV3 1341 aaKnown RBP8.01□□□□□ -1.13
PTCD3-219ENST00000494323 ERVK-7P63135 1459 aa8□□□□□ -1.13
PTCD3-219ENST00000494323 DEPDC5O75140 1603 aa8□□□□□ -1.13
PTCD3-219ENST00000494323 BMP2P12643 396 aa8□□□□□ -1.13
PTCD3-219ENST00000494323 TRIM52Q96A61 297 aa8□□□□□ -1.13
PTCD3-219ENST00000494323 NXF1Q9UBU9 619 aaKnown RBP8□□□□□ -1.13
PTCD3-219ENST00000494323 DOLKQ9UPQ8 538 aa8□□□□□ -1.13
PTCD3-219ENST00000494323 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.99□□□□□ -1.13
PTCD3-219ENST00000494323 SRPK2P78362 688 aaKnown RBP7.99□□□□□ -1.13
PTCD3-219ENST00000494323 EML3Q32P44 896 aa7.99□□□□□ -1.13
PTCD3-219ENST00000494323 INTS6LQ5JSJ4 861 aaKnown RBP7.99□□□□□ -1.13
PTCD3-219ENST00000494323 MYOM3Q5VTT5 1437 aa7.99□□□□□ -1.13
PTCD3-219ENST00000494323 VPS8Q8N3P4 1428 aa7.99□□□□□ -1.13
PTCD3-219ENST00000494323 SLC16A10Q8TF71 515 aa7.99□□□□□ -1.13
PTCD3-219ENST00000494323 CCDC85AQ96PX6 553 aaPredicted RBP7.99□□□□□ -1.13
PTCD3-219ENST00000494323 VRTNQ9H8Y1 702 aa7.99□□□□□ -1.13
PTCD3-219ENST00000494323 KIF15Q9NS87 1388 aa7.98□□□□□ -1.13
PTCD3-219ENST00000494323 CEP152O94986 1710 aa7.98□□□□□ -1.13
PTCD3-219ENST00000494323 NCOA4Q13772 614 aa7.98□□□□□ -1.13
PTCD3-219ENST00000494323 SIRT1Q96EB6 747 aa7.98□□□□□ -1.13
PTCD3-219ENST00000494323 TSEN34Q9BSV6 310 aaKnown RBP7.98□□□□□ -1.13
PTCD3-219ENST00000494323 RNF17Q9BXT8 1623 aaKnown RBP7.98□□□□□ -1.13
PTCD3-219ENST00000494323 SCAF11Q99590 1463 aaKnown RBP7.98□□□□□ -1.13
PTCD3-219ENST00000494323 UBR1Q8IWV7 1749 aa7.98□□□□□ -1.13
PTCD3-219ENST00000494323 ABCC5O15440 1437 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 MAN1A2O60476 641 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 KCNA6P17658 529 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 POTEAQ6S8J7 498 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 NPAS3Q8IXF0 933 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 DEPDC4Q8N2C3 294 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 PCDHB11Q9Y5F2 797 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 DUOX2Q9NRD8 1548 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 MAST1Q9Y2H9 1570 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 TMEM94Q12767 1356 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 TMEM2Q9UHN6 1383 aa7.97□□□□□ -1.13
PTCD3-219ENST00000494323 MROH1Q8NDA8 1641 aa7.96□□□□□ -1.13
PTCD3-219ENST00000494323 SOBPA7XYQ1 873 aa7.96□□□□□ -1.14
PTCD3-219ENST00000494323 ATP5J2-PTCD1G3V325 749 aa7.96□□□□□ -1.14
PTCD3-219ENST00000494323 RAB15P59190 212 aa7.96□□□□□ -1.14
PTCD3-219ENST00000494323 CBLBQ13191 982 aa7.96□□□□□ -1.14
PTCD3-219ENST00000494323 TSGA10IPQ3SY00 556 aa7.96□□□□□ -1.14
PTCD3-219ENST00000494323 TRIM50Q86XT4 487 aa7.96□□□□□ -1.14
PTCD3-219ENST00000494323 MKRN1Q9UHC7 482 aaKnown RBP7.96□□□□□ -1.14
PTCD3-219ENST00000494323 NOD1Q9Y239 953 aa7.96□□□□□ -1.14
PTCD3-219ENST00000494323 KANK1Q14678 1352 aa7.96□□□□□ -1.14
PTCD3-219ENST00000494323 ZC3H13Q5T200 1668 aaKnown RBP7.95□□□□□ -1.14
PTCD3-219ENST00000494323 ARHGAP23Q9P227 1491 aa7.95□□□□□ -1.14
PTCD3-219ENST00000494323 XIRP1Q702N8 1843 aaKnown RBP7.95□□□□□ -1.14
PTCD3-219ENST00000494323 ERVH48-1M5A8F1 160 aa7.95□□□□□ -1.14
PTCD3-219ENST00000494323 ATG7O95352 703 aa7.95□□□□□ -1.14
PTCD3-219ENST00000494323 PDE4CQ08493 712 aa7.95□□□□□ -1.14
PTCD3-219ENST00000494323 USP4Q13107 963 aa7.95□□□□□ -1.14
PTCD3-219ENST00000494323 OXLD1Q5BKU9 147 aa7.95□□□□□ -1.14
PTCD3-219ENST00000494323 Q6ZVU0 165 aa7.95□□□□□ -1.14
PTCD3-219ENST00000494323 SLAIN2Q9P270 581 aa7.95□□□□□ -1.14
PTCD3-219ENST00000494323 EIF2AK4Q9P2K8 1649 aaKnown RBP7.95□□□□□ -1.14
PTCD3-219ENST00000494323 ARHGAP31Q2M1Z3 1444 aa7.95□□□□□ -1.14
PTCD3-219ENST00000494323 SLIT1O75093 1534 aa7.94□□□□□ -1.14
PTCD3-219ENST00000494323 MYCP01106 439 aaPredicted RBP7.94□□□□□ -1.14
PTCD3-219ENST00000494323 ATP1A2P50993 1020 aa7.94□□□□□ -1.14
PTCD3-219ENST00000494323 FAM50AQ14320 339 aaKnown RBP7.94□□□□□ -1.14
PTCD3-219ENST00000494323 FAM135BQ49AJ0 1406 aa7.94□□□□□ -1.14
PTCD3-219ENST00000494323 PIK3C2BO00750 1634 aa7.93□□□□□ -1.14
PTCD3-219ENST00000494323 FAM196BA6NMK8 535 aa7.93□□□□□ -1.14
PTCD3-219ENST00000494323 VEGFBP49765 207 aa7.93□□□□□ -1.14
PTCD3-219ENST00000494323 CDCA8Q53HL2 280 aa7.93□□□□□ -1.14
PTCD3-219ENST00000494323 LARP1Q6PKG0 1096 aaKnown RBP7.93□□□□□ -1.14
PTCD3-219ENST00000494323 IRF7Q92985 503 aa7.93□□□□□ -1.14
PTCD3-219ENST00000494323 CDCA7Q9BWT1 371 aaPredicted RBP7.93□□□□□ -1.14
PTCD3-219ENST00000494323 TMPRSS4Q9NRS4 437 aa7.93□□□□□ -1.14
PTCD3-219ENST00000494323 SLC52A1Q9NWF4 448 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms