RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZNF592Q92610 1267 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CHAMP1Q96JM3 812 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 FERMT3Q86UX7 667 aa12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 RUFY2Q8WXA3 655 aa12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 TNPO1Q92973 898 aaKnown RBP12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 JAKMIP1Q96N16 626 aaKnown RBP12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 BICC1Q9H694 974 aaKnown RBP12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 IGSF1Q8N6C5 1336 aa12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 EXOC5O00471 708 aa12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 ZNF853P0CG23 659 aa12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 HELBQ8NG08 1087 aaPredicted RBP12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 SPDYE4A6NLX3 237 aa12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 GSPT1P15170 499 aaKnown RBP12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 RAB11FIP4Q86YS3 637 aa12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 ZNF594Q96JF6 807 aaPredicted RBP12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 HYPKQ9NX55 129 aa12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CIZ1Q9ULV3 898 aaPredicted RBP12.82□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 GRM8O00222 908 aa12.81□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 PPP4R3BQ5MIZ7 849 aa12.81□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 ATP8B2P98198 1209 aa12.81□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 KSR2Q6VAB6 950 aa12.81□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 ATP7BP35670 1465 aa12.81□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 FAM89AQ96GI7 184 aa12.81□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 LRRC2Q9BYS8 371 aa12.81□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 VWDEQ8N2E2 1590 aa12.81□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CASTP20810 708 aaKnown RBP12.8□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 VPS37DQ86XT2 251 aa12.8□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 FIBPO43427 364 aa12.8□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 NRDCO43847 1150 aa12.8□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 IQGAP1P46940 1657 aa12.8□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 NPHP4O75161 1426 aaPredicted RBP12.8□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 UBAP1LF5GYI3 381 aa12.8□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 IGSF3O75054 1194 aa12.8□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 SMC3Q9UQE7 1217 aa12.8□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 GIGYF1O75420 1035 aaPredicted RBP12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 TIMM10P62072 90 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 GNL2Q13823 731 aaKnown RBP12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 RABEP1Q15276 862 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 ZRSR1Q15695 479 aaKnown RBP12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 TRMT112Q9UI30 125 aaKnown RBP12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 IL2RBP14784 551 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 ZGPATQ8N5A5 531 aaKnown RBP12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CCDC94Q9BW85 323 aaPredicted RBP12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 AATKQ6ZMQ8 1374 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 GOLIM4O00461 696 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 IDH1O75874 414 aaKnown RBP12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 SLC4A8Q2Y0W8 1093 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 RRP12Q5JTH9 1297 aaKnown RBP12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 DDX11Q96FC9 970 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 ABCC4O15439 1325 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 TTLL7Q6ZT98 887 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 UNC5CLQ8IV45 518 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CEP126Q9P2H0 1117 aa12.79□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 LRRC7Q96NW7 1537 aa12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 VGLL3A8MV65 326 aa12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 LETM1O95202 739 aaPredicted RBP12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 SUCLG2Q96I99 432 aa12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 WWC3Q9ULE0 1092 aa12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 NRXN1Q9ULB1 1477 aa12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 H3BQV1 296 aa12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 HAND2P61296 217 aa12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 IFFO2Q5TF58 517 aa12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 FAM184AQ8NB25 1140 aa12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 SOS1Q07889 1333 aaPredicted RBP12.78□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CCDC83Q8IWF9 413 aa12.77□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 DNAJC10Q8IXB1 793 aa12.77□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 RTL1A6NKG5 1358 aa12.77□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CPSF1Q10570 1443 aaKnown RBP12.77□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 PREX1Q8TCU6 1659 aa12.77□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ERICH4A6NGS2 130 aa12.77□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CD2BP2O95400 341 aaKnown RBP12.77□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 STARD3NLO95772 234 aa12.77□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 GTPBP4Q9BZE4 634 aaKnown RBP12.77□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 SLC52A2Q9HAB3 445 aa12.77□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 HTATSF1O43719 755 aaKnown RBP12.77□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 PRIM1P49642 420 aaKnown RBP12.77□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 METTL24Q5JXM2 366 aa12.77□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 DEPDC5O75140 1603 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 TTC39AQ5SRH9 613 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 DNAJC5Q9H3Z4 198 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ECHDC1Q9NTX5 307 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ABCF2Q9UG63 623 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ERBB3P21860 1342 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 PNPLA6Q8IY17 1366 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 MYO3AQ8NEV4 1616 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 GLRX3O76003 335 aaKnown RBP12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 NECAB1Q8N987 351 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 DCAF5Q96JK2 942 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 CD163L1Q9NR16 1453 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 DDX21Q9NR30 783 aaKnown RBP eCLIP12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 ASAP1Q9ULH1 1129 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 MYO5BQ9ULV0 1848 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 PHKG2P15735 406 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 LINS1Q8NG48 757 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 MPHOSPH8Q99549 860 aa12.76□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 SIGLEC1Q9BZZ2 1709 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 TRERF1Q96PN7 1200 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 TSPY26PQ9H489 355 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 JAG2Q9Y219 1238 aa12.75□□□□□ -0.37
MSH5-SAPCD1-207ENST00000493662 SETBP1Q9Y6X0 1596 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms