RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ANKRD62A6NC57 917 aa6.9□□□□□ -1.3
VPS13A-212ENST00000493341 CTSHP09668 335 aa6.9□□□□□ -1.3
VPS13A-212ENST00000493341 PCSK2P16519 638 aa6.9□□□□□ -1.3
VPS13A-212ENST00000493341 NOS2P35228 1153 aa6.9□□□□□ -1.3
VPS13A-212ENST00000493341 PLA2G2CQ5R387 149 aa6.9□□□□□ -1.3
VPS13A-212ENST00000493341 CFHR5Q9BXR6 569 aa6.9□□□□□ -1.3
VPS13A-212ENST00000493341 CUEDC1Q9NWM3 386 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-212ENST00000493341 CABP1Q9NZU7 370 aa6.9□□□□□ -1.3
VPS13A-212ENST00000493341 EML1O00423 815 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 EIF1AYO14602 144 aaKnown RBP6.89□□□□□ -1.31
VPS13A-212ENST00000493341 RC3H1Q5TC82 1133 aaKnown RBP6.89□□□□□ -1.31
VPS13A-212ENST00000493341 PMFBP1Q8TBY8 1022 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 GPR152Q8TDT2 470 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 FBF1Q8TES7 1133 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 L3MBTL2Q969R5 705 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 XAGE2Q96GT9 111 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 RNF223E7ERA6 249 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 RTN1Q16799 776 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 CCDC144BQ3MJ40 725 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 NOP9Q86U38 636 aaKnown RBP6.89□□□□□ -1.31
VPS13A-212ENST00000493341 NUDT16Q96DE0 195 aaKnown RBP6.89□□□□□ -1.31
VPS13A-212ENST00000493341 ESYT1Q9BSJ8 1104 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 SPG7Q9UQ90 795 aa6.89□□□□□ -1.31
VPS13A-212ENST00000493341 RACK1P63244 317 aaKnown RBP6.88□□□□□ -1.31
VPS13A-212ENST00000493341 ARID5AQ03989 594 aa6.88□□□□□ -1.31
VPS13A-212ENST00000493341 USP48Q86UV5 1035 aa6.88□□□□□ -1.31
VPS13A-212ENST00000493341 DDX41Q9UJV9 622 aaKnown RBP6.88□□□□□ -1.31
VPS13A-212ENST00000493341 A6NHS1 94 aa6.88□□□□□ -1.31
VPS13A-212ENST00000493341 ADH1CP00326 375 aa6.88□□□□□ -1.31
VPS13A-212ENST00000493341 EIF4BP23588 611 aaKnown RBP6.88□□□□□ -1.31
VPS13A-212ENST00000493341 SPNS2Q8IVW8 549 aa6.88□□□□□ -1.31
VPS13A-212ENST00000493341 NBPF15Q8N660 670 aa6.88□□□□□ -1.31
VPS13A-212ENST00000493341 ZDHHC1Q8WTX9 485 aa6.88□□□□□ -1.31
VPS13A-212ENST00000493341 TMA7Q9Y2S6 64 aaKnown RBP6.88□□□□□ -1.31
VPS13A-212ENST00000493341 TEAD4Q15561 434 aa6.87□□□□□ -1.31
VPS13A-212ENST00000493341 POTEAQ6S8J7 498 aa6.87□□□□□ -1.31
VPS13A-212ENST00000493341 TREML1Q86YW5 311 aa6.87□□□□□ -1.31
VPS13A-212ENST00000493341 ZNF654Q8IZM8 581 aa6.87□□□□□ -1.31
VPS13A-212ENST00000493341 GMLQ99445 158 aa6.87□□□□□ -1.31
VPS13A-212ENST00000493341 HIRIP3Q9BW71 556 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-212ENST00000493341 PHACTR1Q9C0D0 580 aa6.87□□□□□ -1.31
VPS13A-212ENST00000493341 GGNBP2Q9H3C7 697 aa6.87□□□□□ -1.31
VPS13A-212ENST00000493341 PGPEP1Q9NXJ5 209 aa6.87□□□□□ -1.31
VPS13A-212ENST00000493341 HIRAP54198 1017 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-212ENST00000493341 NR5A1Q13285 461 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS13A-212ENST00000493341 ZNF662Q6ZS27 426 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 HS2ST1Q7LGA3 356 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 FRMD6Q96NE9 622 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 GGT7Q9UJ14 662 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 OPLAHO14841 1288 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 CD2BP2O95400 341 aaKnown RBP6.86□□□□□ -1.31
VPS13A-212ENST00000493341 NEFLP07196 543 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 NR3C2P08235 984 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 MMRN1Q13201 1228 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 ANKRD13AQ8IZ07 590 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 ANKLE1Q8NAG6 615 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 ARMC5Q96C12 935 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 ZSWIM4Q9H7M6 989 aa6.86□□□□□ -1.31
VPS13A-212ENST00000493341 CPNE3O75131 537 aaKnown RBP6.85□□□□□ -1.31
VPS13A-212ENST00000493341 CENPCQ03188 943 aa6.85□□□□□ -1.31
VPS13A-212ENST00000493341 VPS37DQ86XT2 251 aa6.85□□□□□ -1.31
VPS13A-212ENST00000493341 KRTAP3-3Q9BYR6 98 aa6.85□□□□□ -1.31
VPS13A-212ENST00000493341 KRTAP3-2Q9BYR7 98 aa6.85□□□□□ -1.31
VPS13A-212ENST00000493341 CLN3Q13286 438 aa6.84□□□□□ -1.31
VPS13A-212ENST00000493341 PPP1R18Q6NYC8 613 aa6.84□□□□□ -1.31
VPS13A-212ENST00000493341 PI16Q6UXB8 463 aa6.84□□□□□ -1.31
VPS13A-212ENST00000493341 DNAJC25Q9H1X3 360 aa6.84□□□□□ -1.31
VPS13A-212ENST00000493341 HRH3Q9Y5N1 445 aa6.84□□□□□ -1.31
VPS13A-212ENST00000493341 TLDC2A0PJX2 215 aa6.84□□□□□ -1.31
VPS13A-212ENST00000493341 MEN1O00255 615 aa6.84□□□□□ -1.31
VPS13A-212ENST00000493341 SIAH2O43255 324 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 GGCXP38435 758 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 RBL2Q08999 1139 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 MEI1Q5TIA1 1274 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 MPNDQ8N594 471 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 EPS8L3Q8TE67 593 aaKnown RBP6.83□□□□□ -1.32
VPS13A-212ENST00000493341 NLRP3Q96P20 1036 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 NIFKQ9BYG3 293 aaKnown RBP6.83□□□□□ -1.32
VPS13A-212ENST00000493341 OSBPL7Q9BZF2 842 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 SRA1Q9HD15 236 aaKnown RBP6.83□□□□□ -1.32
VPS13A-212ENST00000493341 ADH1AP07327 375 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 RPIAP49247 311 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 PIF1Q9H611 641 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 FAM13BQ9NYF5 915 aa6.83□□□□□ -1.32
VPS13A-212ENST00000493341 STK10O94804 968 aaKnown RBP6.82□□□□□ -1.32
VPS13A-212ENST00000493341 RPLP1P05386 114 aaKnown RBP6.82□□□□□ -1.32
VPS13A-212ENST00000493341 IRS1P35568 1242 aa6.82□□□□□ -1.32
VPS13A-212ENST00000493341 CBLBQ13191 982 aa6.82□□□□□ -1.32
VPS13A-212ENST00000493341 USPL1Q5W0Q7 1092 aa6.82□□□□□ -1.32
VPS13A-212ENST00000493341 TMEM214Q6NUQ4 689 aaKnown RBP6.82□□□□□ -1.32
VPS13A-212ENST00000493341 MCF2L2Q86YR7 1114 aa6.82□□□□□ -1.32
VPS13A-212ENST00000493341 ZNF295-AS1Q8N0V1 137 aa6.82□□□□□ -1.32
VPS13A-212ENST00000493341 KDF1Q8NAX2 398 aaPredicted RBP6.82□□□□□ -1.32
VPS13A-212ENST00000493341 ZSCAN10Q96SZ4 725 aaPredicted RBP6.82□□□□□ -1.32
VPS13A-212ENST00000493341 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS13A-212ENST00000493341 FHDC1Q9C0D6 1143 aaPredicted RBP6.82□□□□□ -1.32
VPS13A-212ENST00000493341 C12orf49Q9H741 205 aa6.82□□□□□ -1.32
VPS13A-212ENST00000493341 BCS1LQ9Y276 419 aa6.82□□□□□ -1.32
VPS13A-212ENST00000493341 MICAL2O94851 1124 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms