RNA–Protein interactions for RNA: ENST00000491747.6

BRCA1-219, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5 BASIC

Gene BRCA1, Length 2,379 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-219ENST00000491747 POLRMTO00411 1230 aaKnown RBP12.1□□□□□ -0.47
BRCA1-219ENST00000491747 ANXA1P04083 346 aa12.1□□□□□ -0.47
BRCA1-219ENST00000491747 PROSER3Q2NL68 480 aa12.1□□□□□ -0.47
BRCA1-219ENST00000491747 TBC1D9BQ66K14 1250 aa12.1□□□□□ -0.47
BRCA1-219ENST00000491747 TSR2Q969E8 191 aaKnown RBP12.1□□□□□ -0.47
BRCA1-219ENST00000491747 CALD1Q05682 793 aaKnown RBP12.1□□□□□ -0.47
BRCA1-219ENST00000491747 PARP3Q9Y6F1 533 aa12.1□□□□□ -0.47
BRCA1-219ENST00000491747 DUSP27Q5VZP5 1158 aa12.09□□□□□ -0.47
BRCA1-219ENST00000491747 BICDL1Q6ZP65 573 aa12.09□□□□□ -0.47
BRCA1-219ENST00000491747 TTLL7Q6ZT98 887 aa12.09□□□□□ -0.47
BRCA1-219ENST00000491747 C8orf58Q8NAV2 365 aa12.09□□□□□ -0.47
BRCA1-219ENST00000491747 SPINK5Q9NQ38 1064 aaPredicted RBP12.09□□□□□ -0.47
BRCA1-219ENST00000491747 CD2APQ9Y5K6 639 aa12.09□□□□□ -0.47
BRCA1-219ENST00000491747 C10orf71Q711Q0 1435 aa12.09□□□□□ -0.47
BRCA1-219ENST00000491747 ELL2O00472 640 aaPredicted RBP12.08□□□□□ -0.47
BRCA1-219ENST00000491747 HLFQ16534 295 aa12.08□□□□□ -0.48
BRCA1-219ENST00000491747 TSPYL6Q8N831 410 aa12.08□□□□□ -0.48
BRCA1-219ENST00000491747 ANP32AP39687 249 aaKnown RBP12.07□□□□□ -0.48
BRCA1-219ENST00000491747 NPM2Q86SE8 214 aaKnown RBP12.07□□□□□ -0.48
BRCA1-219ENST00000491747 IL16Q14005 1332 aa12.07□□□□□ -0.48
BRCA1-219ENST00000491747 ERBB4Q15303 1308 aa12.07□□□□□ -0.48
BRCA1-219ENST00000491747 ANKRD31Q8N7Z5 1873 aa12.07□□□□□ -0.48
BRCA1-219ENST00000491747 BRCA1P38398 1863 aaKnown RBP12.07□□□□□ -0.48
BRCA1-219ENST00000491747 WDR63Q8IWG1 891 aa12.07□□□□□ -0.48
BRCA1-219ENST00000491747 SERPINB2P05120 415 aa12.06□□□□□ -0.48
BRCA1-219ENST00000491747 CHPF2Q9P2E5 772 aa12.06□□□□□ -0.48
BRCA1-219ENST00000491747 ZNF521Q96K83 1311 aa12.06□□□□□ -0.48
BRCA1-219ENST00000491747 PXDNLA1KZ92 1463 aa12.06□□□□□ -0.48
BRCA1-219ENST00000491747 HOXB7P09629 217 aa12.06□□□□□ -0.48
BRCA1-219ENST00000491747 HDGFL1Q5TGJ6 251 aa12.06□□□□□ -0.48
BRCA1-219ENST00000491747 DDX21Q9NR30 783 aaKnown RBP eCLIP12.05□□□□□ -0.48
BRCA1-219ENST00000491747 WWC3Q9ULE0 1092 aa12.05□□□□□ -0.48
BRCA1-219ENST00000491747 MAP3K15Q6ZN16 1313 aa12.05□□□□□ -0.48
BRCA1-219ENST00000491747 CARMIL3Q8ND23 1372 aa12.05□□□□□ -0.48
BRCA1-219ENST00000491747 GOLGB1Q14789 3259 aaKnown RBP12.05□□□□□ -0.48
BRCA1-219ENST00000491747 CLEC4GQ6UXB4 293 aa12.05□□□□□ -0.48
BRCA1-219ENST00000491747 CCDC24Q8N4L8 307 aa12.05□□□□□ -0.48
BRCA1-219ENST00000491747 ZBTB3Q9H5J0 574 aa12.05□□□□□ -0.48
BRCA1-219ENST00000491747 ANKRD36CQ5JPF3 1778 aa12.04□□□□□ -0.48
BRCA1-219ENST00000491747 A0A0G2JLW4 131 aa12.04□□□□□ -0.48
BRCA1-219ENST00000491747 DEKP35659 375 aaKnown RBP12.04□□□□□ -0.48
BRCA1-219ENST00000491747 COPS6Q7L5N1 327 aa12.04□□□□□ -0.48
BRCA1-219ENST00000491747 ERVV-1B6SEH8 477 aa12.04□□□□□ -0.48
BRCA1-219ENST00000491747 YBX3P16989 372 aaKnown RBP eCLIP12.04□□□□□ -0.487e-6■■■□□ 18.9
BRCA1-219ENST00000491747 KCNA3P22001 575 aa12.04□□□□□ -0.48
BRCA1-219ENST00000491747 AIMP1Q12904 312 aaKnown RBP12.04□□□□□ -0.48
BRCA1-219ENST00000491747 XAGE3Q8WTP9 111 aa12.04□□□□□ -0.48
BRCA1-219ENST00000491747 SETDB2Q96T68 719 aa12.04□□□□□ -0.48
BRCA1-219ENST00000491747 DLEC1Q9Y238 1755 aa12.03□□□□□ -0.48
BRCA1-219ENST00000491747 DPEP1P16444 411 aa12.03□□□□□ -0.48
BRCA1-219ENST00000491747 KIF6Q6ZMV9 814 aa12.03□□□□□ -0.48
BRCA1-219ENST00000491747 IPO9Q96P70 1041 aaKnown RBP12.03□□□□□ -0.48
BRCA1-219ENST00000491747 UTRNP46939 3433 aa12.03□□□□□ -0.48
BRCA1-219ENST00000491747 TGFB2P61812 414 aa12.03□□□□□ -0.48
BRCA1-219ENST00000491747 PRR5LQ6MZQ0 368 aa12.03□□□□□ -0.48
BRCA1-219ENST00000491747 DBF4Q9UBU7 674 aaPredicted RBP12.03□□□□□ -0.48
BRCA1-219ENST00000491747 NIP7Q9Y221 180 aaKnown RBP eCLIP12.03□□□□□ -0.48
BRCA1-219ENST00000491747 ZNF652Q9Y2D9 606 aa12.03□□□□□ -0.48
BRCA1-219ENST00000491747 ARFGEF2Q9Y6D5 1785 aa12.02□□□□□ -0.48
BRCA1-219ENST00000491747 COL11A2P13942 1736 aaPredicted RBP12.02□□□□□ -0.48
BRCA1-219ENST00000491747 TCERG1O14776 1098 aaKnown RBP12.02□□□□□ -0.49
BRCA1-219ENST00000491747 RGL2O15211 777 aa12.02□□□□□ -0.49
BRCA1-219ENST00000491747 CHRNA5P30532 468 aa12.02□□□□□ -0.49
BRCA1-219ENST00000491747 EXOSC9Q06265 439 aaKnown RBP12.02□□□□□ -0.49
BRCA1-219ENST00000491747 PHAXQ9H814 394 aaKnown RBP12.02□□□□□ -0.49
BRCA1-219ENST00000491747 GPR162Q16538 588 aa12.01□□□□□ -0.49
BRCA1-219ENST00000491747 TWISTNBQ3B726 338 aaPredicted RBP12.01□□□□□ -0.49
BRCA1-219ENST00000491747 GIGYF2Q6Y7W6 1299 aaKnown RBP12.01□□□□□ -0.49
BRCA1-219ENST00000491747 UBN2Q6ZU65 1347 aa12.01□□□□□ -0.49
BRCA1-219ENST00000491747 FAM177BA6PVY3 158 aa12.01□□□□□ -0.49
BRCA1-219ENST00000491747 ZNF34Q8IZ26 560 aa12.01□□□□□ -0.49
BRCA1-219ENST00000491747 ATP10DQ9P241 1426 aa12.01□□□□□ -0.49
BRCA1-219ENST00000491747 GPTP24298 496 aa12□□□□□ -0.49
BRCA1-219ENST00000491747 CACNA1SQ13698 1873 aa12□□□□□ -0.49
BRCA1-219ENST00000491747 VAMP4O75379 141 aa12□□□□□ -0.49
BRCA1-219ENST00000491747 GOLGA2Q08379 1002 aa12□□□□□ -0.49
BRCA1-219ENST00000491747 HYPKQ9NX55 129 aa12□□□□□ -0.49
BRCA1-219ENST00000491747 ZBTB47Q9UFB7 747 aaPredicted RBP12□□□□□ -0.49
BRCA1-219ENST00000491747 TNRC6CQ9HCJ0 1690 aaKnown RBP12□□□□□ -0.49
BRCA1-219ENST00000491747 ARFGEF1Q9Y6D6 1849 aa11.99□□□□□ -0.49
BRCA1-219ENST00000491747 CHD4Q14839 1912 aa11.99□□□□□ -0.49
BRCA1-219ENST00000491747 NBR1Q14596 966 aa11.99□□□□□ -0.49
BRCA1-219ENST00000491747 CCDC30Q5VVM6 783 aa11.99□□□□□ -0.49
BRCA1-219ENST00000491747 SUSD4Q5VX71 490 aa11.99□□□□□ -0.49
BRCA1-219ENST00000491747 NBPF5PQ86XG9 351 aaPredicted RBP11.99□□□□□ -0.49
BRCA1-219ENST00000491747 CNBD1Q8NA66 436 aa11.99□□□□□ -0.49
BRCA1-219ENST00000491747 CDCA7LQ96GN5 454 aa11.99□□□□□ -0.49
BRCA1-219ENST00000491747 DCAF8L1A6NGE4 600 aa11.99□□□□□ -0.49
BRCA1-219ENST00000491747 CACNA1FO60840 1977 aa11.98□□□□□ -0.49
BRCA1-219ENST00000491747 ANKRD13DQ6ZTN6 518 aa11.98□□□□□ -0.49
BRCA1-219ENST00000491747 G2E3Q7L622 706 aa11.98□□□□□ -0.49
BRCA1-219ENST00000491747 PLBD2Q8NHP8 589 aa11.98□□□□□ -0.49
BRCA1-219ENST00000491747 ZNF428Q96B54 188 aa11.98□□□□□ -0.49
BRCA1-219ENST00000491747 BRIP1Q9BX63 1249 aa11.98□□□□□ -0.49
BRCA1-219ENST00000491747 MYH16Q9H6N6 1097 aa11.98□□□□□ -0.49
BRCA1-219ENST00000491747 SLFN5Q08AF3 891 aa11.98□□□□□ -0.49
BRCA1-219ENST00000491747 RTL5Q5HYW3 569 aaPredicted RBP11.98□□□□□ -0.49
BRCA1-219ENST00000491747 NUTM1Q86Y26 1132 aa11.98□□□□□ -0.49
BRCA1-219ENST00000491747 RRP1P56182 461 aaKnown RBP11.97□□□□□ -0.49
BRCA1-219ENST00000491747 TCIRG1Q13488 830 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms