RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 EFCAB2Q5VUJ9 269 aa7.63□□□□□ -1.19
VPS41-214ENST00000490924 KANK3Q6NY19 840 aa7.63□□□□□ -1.19
VPS41-214ENST00000490924 DDRGK1Q96HY6 314 aa7.63□□□□□ -1.19
VPS41-214ENST00000490924 BACH2Q9BYV9 841 aa7.63□□□□□ -1.19
VPS41-214ENST00000490924 CHD1O14646 1710 aa7.63□□□□□ -1.19
VPS41-214ENST00000490924 SPHKAPQ2M3C7 1700 aa7.62□□□□□ -1.19
VPS41-214ENST00000490924 PPM1GO15355 546 aaPredicted RBP7.62□□□□□ -1.19
VPS41-214ENST00000490924 RAB15P59190 212 aa7.62□□□□□ -1.19
VPS41-214ENST00000490924 ZNF326Q5BKZ1 582 aaKnown RBP7.62□□□□□ -1.19
VPS41-214ENST00000490924 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.62□□□□□ -1.19
VPS41-214ENST00000490924 TET3O43151 1660 aa7.62□□□□□ -1.19
VPS41-214ENST00000490924 LMTK2Q8IWU2 1503 aa7.62□□□□□ -1.19
VPS41-214ENST00000490924 ASXL1Q8IXJ9 1541 aa7.62□□□□□ -1.19
VPS41-214ENST00000490924 DISP3Q9P2K9 1392 aa7.61□□□□□ -1.19
VPS41-214ENST00000490924 IGHA1P01876 353 aa7.61□□□□□ -1.19
VPS41-214ENST00000490924 FOXK2Q01167 660 aa7.61□□□□□ -1.19
VPS41-214ENST00000490924 SUZ12Q15022 739 aaKnown RBP7.61□□□□□ -1.19
VPS41-214ENST00000490924 CENPQQ7L2Z9 268 aaPredicted RBP7.61□□□□□ -1.19
VPS41-214ENST00000490924 PUS7Q96PZ0 661 aaKnown RBP7.61□□□□□ -1.19
VPS41-214ENST00000490924 INSM2Q96T92 566 aaPredicted RBP7.61□□□□□ -1.19
VPS41-214ENST00000490924 ESF1Q9H501 851 aaKnown RBP7.61□□□□□ -1.19
VPS41-214ENST00000490924 SLC24A3Q9HC58 644 aa7.61□□□□□ -1.19
VPS41-214ENST00000490924 ZFYVE16Q7Z3T8 1539 aa7.61□□□□□ -1.19
VPS41-214ENST00000490924 NRXN1Q9ULB1 1477 aa7.61□□□□□ -1.19
VPS41-214ENST00000490924 SLC35F4A4IF30 521 aa7.6□□□□□ -1.19
VPS41-214ENST00000490924 IRS1P35568 1242 aa7.6□□□□□ -1.19
VPS41-214ENST00000490924 SKIV2LQ15477 1246 aaKnown RBP7.6□□□□□ -1.19
VPS41-214ENST00000490924 TRMT2AQ8IZ69 625 aaKnown RBP7.6□□□□□ -1.19
VPS41-214ENST00000490924 GPR161Q8N6U8 529 aaKnown RBP7.6□□□□□ -1.19
VPS41-214ENST00000490924 AGBL1Q96MI9 1066 aa7.6□□□□□ -1.19
VPS41-214ENST00000490924 CEP152O94986 1710 aa7.6□□□□□ -1.19
VPS41-214ENST00000490924 KDM2BQ8NHM5 1336 aa7.59□□□□□ -1.19
VPS41-214ENST00000490924 AP1G2O75843 785 aa7.59□□□□□ -1.19
VPS41-214ENST00000490924 NR6A1Q15406 480 aa7.59□□□□□ -1.19
VPS41-214ENST00000490924 INTS6LQ5JSJ4 861 aaKnown RBP7.59□□□□□ -1.19
VPS41-214ENST00000490924 PODNQ7Z5L7 613 aa7.59□□□□□ -1.19
VPS41-214ENST00000490924 ZNF395Q9H8N7 513 aaPredicted RBP7.59□□□□□ -1.19
VPS41-214ENST00000490924 KNSTRNQ9Y448 316 aa7.59□□□□□ -1.19
VPS41-214ENST00000490924 DNMT3AQ9Y6K1 912 aaPredicted RBP7.59□□□□□ -1.19
VPS41-214ENST00000490924 FANCAO15360 1455 aa7.59□□□□□ -1.19
VPS41-214ENST00000490924 MYO3AQ8NEV4 1616 aa7.59□□□□□ -1.19
VPS41-214ENST00000490924 INO80Q9ULG1 1556 aaPredicted RBP7.59□□□□□ -1.2
VPS41-214ENST00000490924 SETBP1Q9Y6X0 1596 aa7.59□□□□□ -1.2
VPS41-214ENST00000490924 KANK1Q14678 1352 aa7.59□□□□□ -1.2
VPS41-214ENST00000490924 CTSOP43234 321 aaPredicted RBP7.58□□□□□ -1.2
VPS41-214ENST00000490924 LYSMD3Q7Z3D4 306 aa7.58□□□□□ -1.2
VPS41-214ENST00000490924 ADAM32Q8TC27 787 aa7.58□□□□□ -1.2
VPS41-214ENST00000490924 LRRN4Q8WUT4 740 aa7.58□□□□□ -1.2
VPS41-214ENST00000490924 PANK3Q9H999 370 aa7.58□□□□□ -1.2
VPS41-214ENST00000490924 PHF20L1A8MW92 1017 aa7.57□□□□□ -1.2
VPS41-214ENST00000490924 ADH1AP07327 375 aa7.57□□□□□ -1.2
VPS41-214ENST00000490924 DEKP35659 375 aaKnown RBP7.57□□□□□ -1.2
VPS41-214ENST00000490924 NBPF1Q3BBV0 1214 aa7.57□□□□□ -1.2
VPS41-214ENST00000490924 ZNF385CQ66K41 422 aaPredicted RBP7.57□□□□□ -1.2
VPS41-214ENST00000490924 GPAT2Q6NUI2 795 aa7.57□□□□□ -1.2
VPS41-214ENST00000490924 EXOC6Q8TAG9 804 aa7.57□□□□□ -1.2
VPS41-214ENST00000490924 GMCL1Q96IK5 515 aa7.57□□□□□ -1.2
VPS41-214ENST00000490924 NSFL1CQ9UNZ2 370 aaKnown RBP7.57□□□□□ -1.2
VPS41-214ENST00000490924 POLR3AO14802 1390 aaPredicted RBP7.57□□□□□ -1.2
VPS41-214ENST00000490924 ABCA9Q8IUA7 1624 aa7.56□□□□□ -1.2
VPS41-214ENST00000490924 PPP2R1AP30153 589 aa7.56□□□□□ -1.2
VPS41-214ENST00000490924 PTGIRP43119 386 aa7.56□□□□□ -1.2
VPS41-214ENST00000490924 KRT76Q01546 638 aa7.56□□□□□ -1.2
VPS41-214ENST00000490924 DUSP27Q5VZP5 1158 aa7.56□□□□□ -1.2
VPS41-214ENST00000490924 CCDC125Q86Z20 511 aa7.56□□□□□ -1.2
VPS41-214ENST00000490924 ZNF592Q92610 1267 aa7.56□□□□□ -1.2
VPS41-214ENST00000490924 ZCCHC11Q5TAX3 1644 aaKnown RBP7.56□□□□□ -1.2
VPS41-214ENST00000490924 USP32Q8NFA0 1604 aa7.56□□□□□ -1.2
VPS41-214ENST00000490924 NKTRP30414 1462 aaKnown RBP7.55□□□□□ -1.2
VPS41-214ENST00000490924 SPAG9O60271 1321 aaKnown RBP7.55□□□□□ -1.2
VPS41-214ENST00000490924 KDM5AP29375 1690 aaKnown RBP7.55□□□□□ -1.2
VPS41-214ENST00000490924 E9PSI1 815 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 H7C1W4 665 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 ADAMTS2O95450 1211 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 SLURP2P0DP57 97 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 SRSF11Q05519 484 aaKnown RBP7.55□□□□□ -1.2
VPS41-214ENST00000490924 PDE3AQ14432 1141 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 WDR43Q15061 677 aaKnown RBP eCLIP7.55□□□□□ -1.2
VPS41-214ENST00000490924 PPP2R2DQ66LE6 453 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 RNF217Q8TC41 542 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 TRERF1Q96PN7 1200 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 POLR3GLQ9BT43 218 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 EFCAB6Q5THR3 1501 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 NSD2O96028 1365 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 MAP3K4Q9Y6R4 1608 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 ADGRL1O94910 1474 aa7.55□□□□□ -1.2
VPS41-214ENST00000490924 CGNL1Q0VF96 1302 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 MYOM1P52179 1685 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 TRAPPC8Q9Y2L5 1435 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 ATP7AQ04656 1500 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 CLTCL1P53675 1640 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 SLFN5Q08AF3 891 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 SH3D19Q5HYK7 790 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 RIPOR1Q6ZS17 1223 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 SEPT12Q8IYM1 358 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 ZNF784Q8NCA9 323 aaPredicted RBP7.54□□□□□ -1.2
VPS41-214ENST00000490924 NEDD1Q8NHV4 660 aa7.54□□□□□ -1.2
VPS41-214ENST00000490924 RPGRIP1LQ68CZ1 1315 aa7.53□□□□□ -1.2
VPS41-214ENST00000490924 CT47B1P0C2W7 299 aaPredicted RBP7.53□□□□□ -1.2
VPS41-214ENST00000490924 CCDC27Q2M243 656 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms