RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 BRIP1Q9BX63 1249 aa26.68■■□□□ 1.86
HDAC4-209ENST00000487617 MRS2Q9HD23 443 aa26.68■■□□□ 1.86
HDAC4-209ENST00000487617 NIP7Q9Y221 180 aaKnown RBP eCLIP26.68■■□□□ 1.86
HDAC4-209ENST00000487617 HLFQ16534 295 aa26.67■■□□□ 1.86
HDAC4-209ENST00000487617 KIF6Q6ZMV9 814 aa26.67■■□□□ 1.86
HDAC4-209ENST00000487617 NBPF5PQ86XG9 351 aaPredicted RBP26.67■■□□□ 1.86
HDAC4-209ENST00000487617 PDE6BP35913 854 aa26.66■■□□□ 1.86
HDAC4-209ENST00000487617 ST5P78524 1137 aa26.66■■□□□ 1.86
HDAC4-209ENST00000487617 TTLL7Q6ZT98 887 aa26.66■■□□□ 1.86
HDAC4-209ENST00000487617 CFAP44Q96MT7 982 aa26.66■■□□□ 1.86
HDAC4-209ENST00000487617 BRCA1P38398 1863 aaKnown RBP26.66■■□□□ 1.86
HDAC4-209ENST00000487617 ERVV-1B6SEH8 477 aa26.65■■□□□ 1.86
HDAC4-209ENST00000487617 KRT24Q2M2I5 525 aa26.65■■□□□ 1.86
HDAC4-209ENST00000487617 MAP3K15Q6ZN16 1313 aa26.65■■□□□ 1.86
HDAC4-209ENST00000487617 NECTIN2Q92692 538 aa26.64■■□□□ 1.86
HDAC4-209ENST00000487617 PDZRN3Q9UPQ7 1066 aa26.64■■□□□ 1.86
HDAC4-209ENST00000487617 CALD1Q05682 793 aaKnown RBP26.63■■□□□ 1.85
HDAC4-209ENST00000487617 TTLL6Q8N841 843 aa26.63■■□□□ 1.85
HDAC4-209ENST00000487617 ATP10DQ9P241 1426 aa26.63■■□□□ 1.85
HDAC4-209ENST00000487617 FAM177BA6PVY3 158 aa26.62■■□□□ 1.85
HDAC4-209ENST00000487617 PDIA6Q15084 440 aa26.62■■□□□ 1.85
HDAC4-209ENST00000487617 ZNF622Q969S3 477 aaKnown RBP eCLIP26.62■■□□□ 1.85
HDAC4-209ENST00000487617 ZBTB3Q9H5J0 574 aa26.62■■□□□ 1.85
HDAC4-209ENST00000487617 ANXA1P04083 346 aa26.61■■□□□ 1.85
HDAC4-209ENST00000487617 PROSER3Q2NL68 480 aa26.61■■□□□ 1.85
HDAC4-209ENST00000487617 TPTE2Q6XPS3 522 aa26.61■■□□□ 1.85
HDAC4-209ENST00000487617 MBIPQ9NS73 344 aa26.61■■□□□ 1.85
HDAC4-209ENST00000487617 ADCY9O60503 1353 aa26.6■■□□□ 1.85
HDAC4-209ENST00000487617 LRP10Q7Z4F1 713 aa26.6■■□□□ 1.85
HDAC4-209ENST00000487617 IFT57Q9NWB7 429 aa26.6■■□□□ 1.85
HDAC4-209ENST00000487617 ZNF853P0CG23 659 aa26.59■■□□□ 1.85
HDAC4-209ENST00000487617 ARFGEF1Q9Y6D6 1849 aa26.58■■□□□ 1.85
HDAC4-209ENST00000487617 HOXB7P09629 217 aa26.58■■□□□ 1.85
HDAC4-209ENST00000487617 GNAI1P63096 354 aa26.58■■□□□ 1.85
HDAC4-209ENST00000487617 ANKRD31Q8N7Z5 1873 aa26.57■■□□□ 1.84
HDAC4-209ENST00000487617 SENP3-EIF4A1A0A087X0R7 540 aa26.57■■□□□ 1.84
HDAC4-209ENST00000487617 GTF2E1P29083 439 aaPredicted RBP26.57■■□□□ 1.84
HDAC4-209ENST00000487617 HDGFL1Q5TGJ6 251 aa26.57■■□□□ 1.84
HDAC4-209ENST00000487617 DDX21Q9NR30 783 aaKnown RBP eCLIP26.57■■□□□ 1.84
HDAC4-209ENST00000487617 GPTP24298 496 aa26.56■■□□□ 1.84
HDAC4-209ENST00000487617 DUSP27Q5VZP5 1158 aa26.56■■□□□ 1.84
HDAC4-209ENST00000487617 GIGYF2Q6Y7W6 1299 aaKnown RBP26.56■■□□□ 1.84
HDAC4-209ENST00000487617 ZNF526Q8TF50 670 aaPredicted RBP26.56■■□□□ 1.84
HDAC4-209ENST00000487617 AIMP1Q12904 312 aaKnown RBP26.55■■□□□ 1.84
HDAC4-209ENST00000487617 C9orf131Q5VYM1 1079 aa26.55■■□□□ 1.84
HDAC4-209ENST00000487617 COPS6Q7L5N1 327 aa26.55■■□□□ 1.84
HDAC4-209ENST00000487617 NYXQ9GZU5 481 aa26.55■■□□□ 1.84
HDAC4-209ENST00000487617 CHPF2Q9P2E5 772 aa26.55■■□□□ 1.84
HDAC4-209ENST00000487617 DLEC1Q9Y238 1755 aa26.55■■□□□ 1.84
HDAC4-209ENST00000487617 SRGNP10124 158 aa26.54■■□□□ 1.84
HDAC4-209ENST00000487617 STYK1Q6J9G0 422 aa26.54■■□□□ 1.84
HDAC4-209ENST00000487617 XAGE3Q8WTP9 111 aa26.54■■□□□ 1.84
HDAC4-209ENST00000487617 MASTLQ96GX5 879 aa26.54■■□□□ 1.84
HDAC4-209ENST00000487617 GPBP1L1Q9HC44 474 aaPredicted RBP26.54■■□□□ 1.84
HDAC4-209ENST00000487617 CNKSR1Q969H4 720 aa26.53■■□□□ 1.84
HDAC4-209ENST00000487617 UBN2Q6ZU65 1347 aa26.52■■□□□ 1.84
HDAC4-209ENST00000487617 NUTM1Q86Y26 1132 aa26.52■■□□□ 1.84
HDAC4-209ENST00000487617 ZNF34Q8IZ26 560 aa26.52■■□□□ 1.84
HDAC4-209ENST00000487617 ZNF219Q9P2Y4 722 aaPredicted RBP26.52■■□□□ 1.84
HDAC4-209ENST00000487617 RASSF7Q02833 373 aa26.51■■□□□ 1.83
HDAC4-209ENST00000487617 CCDC27Q2M243 656 aa26.51■■□□□ 1.83
HDAC4-209ENST00000487617 SUSD4Q5VX71 490 aa26.51■■□□□ 1.83
HDAC4-209ENST00000487617 RNF181Q9P0P0 153 aa26.51■■□□□ 1.83
HDAC4-209ENST00000487617 COL11A2P13942 1736 aaPredicted RBP26.51■■□□□ 1.83
HDAC4-209ENST00000487617 KLRG2A4D1S0 409 aaPredicted RBP26.5■■□□□ 1.83
HDAC4-209ENST00000487617 C21orf2O43822 256 aa26.5■■□□□ 1.83
HDAC4-209ENST00000487617 NPR1P16066 1061 aa26.5■■□□□ 1.83
HDAC4-209ENST00000487617 WWC1Q8IX03 1113 aa26.5■■□□□ 1.83
HDAC4-209ENST00000487617 DBF4Q9UBU7 674 aaPredicted RBP26.5■■□□□ 1.83
HDAC4-209ENST00000487617 NUP98P52948 1817 aa26.49■■□□□ 1.83
HDAC4-209ENST00000487617 ELL2O00472 640 aaPredicted RBP26.49■■□□□ 1.83
HDAC4-209ENST00000487617 ERFEQ4G0M1 354 aa26.49■■□□□ 1.83
HDAC4-209ENST00000487617 PARP10Q53GL7 1025 aa26.49■■□□□ 1.83
HDAC4-209ENST00000487617 PRPF40BQ6NWY9 871 aaKnown RBP26.49■■□□□ 1.83
HDAC4-209ENST00000487617 IBTKQ9P2D0 1353 aaPredicted RBP26.48■■□□□ 1.83
HDAC4-209ENST00000487617 PPP1R42Q7Z4L9 355 aa26.48■■□□□ 1.83
HDAC4-209ENST00000487617 ABCC12Q96J65 1359 aa26.47■■□□□ 1.83
HDAC4-209ENST00000487617 HSP90AB3PQ58FF7 597 aa26.47■■□□□ 1.83
HDAC4-209ENST00000487617 NTSR2O95665 410 aa26.46■■□□□ 1.83
HDAC4-209ENST00000487617 NCBP3Q53F19 620 aaKnown RBP26.46■■□□□ 1.83
HDAC4-209ENST00000487617 FAM9BQ8IZU0 186 aa26.46■■□□□ 1.83
HDAC4-209ENST00000487617 C8orf58Q8NAV2 365 aa26.46■■□□□ 1.83
HDAC4-209ENST00000487617 HYPKQ9NX55 129 aa26.46■■□□□ 1.83
HDAC4-209ENST00000487617 NFKBIEO00221 500 aa26.45■■□□□ 1.82
HDAC4-209ENST00000487617 LMNB1P20700 586 aa26.45■■□□□ 1.82
HDAC4-209ENST00000487617 C1QTNF8P60827 252 aa26.45■■□□□ 1.82
HDAC4-209ENST00000487617 SALL2Q9Y467 1007 aaPredicted RBP26.45■■□□□ 1.82
HDAC4-209ENST00000487617 TSR2Q969E8 191 aaKnown RBP26.44■■□□□ 1.82
HDAC4-209ENST00000487617 UTP14AQ9BVJ6 771 aaKnown RBP26.44■■□□□ 1.82
HDAC4-209ENST00000487617 TCIRG1Q13488 830 aa26.43■■□□□ 1.82
HDAC4-209ENST00000487617 SOGA3Q5TF21 947 aa26.43■■□□□ 1.82
HDAC4-209ENST00000487617 PLBD2Q8NHP8 589 aa26.43■■□□□ 1.82
HDAC4-209ENST00000487617 PRELPP51888 382 aa26.42■■□□□ 1.82
HDAC4-209ENST00000487617 ANKRD13DQ6ZTN6 518 aa26.42■■□□□ 1.82
HDAC4-209ENST00000487617 IL16Q14005 1332 aa26.41■■□□□ 1.82
HDAC4-209ENST00000487617 ALDH1B1P30837 517 aa26.41■■□□□ 1.82
HDAC4-209ENST00000487617 CRY2Q49AN0 593 aa26.41■■□□□ 1.82
HDAC4-209ENST00000487617 NLRP10Q86W26 655 aa26.41■■□□□ 1.82
HDAC4-209ENST00000487617 TSPYL6Q8N831 410 aa26.41■■□□□ 1.82
HDAC4-209ENST00000487617 SLX4Q8IY92 1834 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms