RNA–Protein interactions for RNA: ENST00000487244.5

UBE4B-209, Transcript of ubiquitination factor E4B, humanhuman

TSL 1 (best)

Gene UBE4B, Length 818 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-209ENST00000487244 KDM3BQ7LBC6 1761 aa9.52□□□□□ -0.89
UBE4B-209ENST00000487244 CNTNAP4Q9C0A0 1308 aa9.52□□□□□ -0.89
UBE4B-209ENST00000487244 KCNQ3O43525 872 aa9.51□□□□□ -0.89
UBE4B-209ENST00000487244 CRKLP46109 303 aaKnown RBP9.51□□□□□ -0.89
UBE4B-209ENST00000487244 TEFQ10587 303 aa9.51□□□□□ -0.89
UBE4B-209ENST00000487244 CCDC184Q52MB2 194 aa9.51□□□□□ -0.89
UBE4B-209ENST00000487244 DNAJC10Q8IXB1 793 aa9.51□□□□□ -0.89
UBE4B-209ENST00000487244 THUMPD2Q9BTF0 503 aaKnown RBP9.51□□□□□ -0.89
UBE4B-209ENST00000487244 SSFA2P28290 1259 aa9.5□□□□□ -0.89
UBE4B-209ENST00000487244 CCDC146Q8IYE0 955 aa9.5□□□□□ -0.89
UBE4B-209ENST00000487244 SLC16A10Q8TF71 515 aa9.5□□□□□ -0.89
UBE4B-209ENST00000487244 ZNF496Q96IT1 587 aaPredicted RBP9.5□□□□□ -0.89
UBE4B-209ENST00000487244 FHDC1Q9C0D6 1143 aaPredicted RBP9.5□□□□□ -0.89
UBE4B-209ENST00000487244 NFE2L2Q16236 605 aa9.49□□□□□ -0.89
UBE4B-209ENST00000487244 INTS5Q6P9B9 1019 aaKnown RBP9.49□□□□□ -0.89
UBE4B-209ENST00000487244 ZNF790Q6PG37 636 aa9.49□□□□□ -0.89
UBE4B-209ENST00000487244 TMEM92Q6UXU6 159 aa9.49□□□□□ -0.89
UBE4B-209ENST00000487244 ARXQ96QS3 562 aa9.49□□□□□ -0.89
UBE4B-209ENST00000487244 MAPK8IP3Q9UPT6 1336 aa9.49□□□□□ -0.89
UBE4B-209ENST00000487244 LAMB4A4D0S4 1761 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 BTBD11A6QL63 1104 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 RPS6KA4O75676 772 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 CYP19A1P11511 503 aaPredicted RBP9.48□□□□□ -0.89
UBE4B-209ENST00000487244 RC3H1Q5TC82 1133 aaKnown RBP9.48□□□□□ -0.89
UBE4B-209ENST00000487244 TTC5Q8N0Z6 440 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 SPRYD3Q8NCJ5 442 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 FLAD1Q8NFF5 587 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 TMC2Q8TDI7 906 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 RTF1Q92541 710 aaKnown RBP9.48□□□□□ -0.89
UBE4B-209ENST00000487244 ARHGEF1Q92888 912 aaKnown RBP9.48□□□□□ -0.89
UBE4B-209ENST00000487244 MIS18AQ9NYP9 233 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 ADAMTS8Q9UP79 889 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 RRP7AQ9Y3A4 280 aaKnown RBP9.48□□□□□ -0.89
UBE4B-209ENST00000487244 RTCBQ9Y3I0 505 aaKnown RBP9.48□□□□□ -0.89
UBE4B-209ENST00000487244 GOLGB1Q14789 3259 aaKnown RBP9.48□□□□□ -0.89
UBE4B-209ENST00000487244 HEG1Q9ULI3 1381 aa9.48□□□□□ -0.89
UBE4B-209ENST00000487244 PRAMEF22A3QJZ6 481 aa9.47□□□□□ -0.89
UBE4B-209ENST00000487244 HTATSF1O43719 755 aaKnown RBP9.47□□□□□ -0.89
UBE4B-209ENST00000487244 POLD1P28340 1107 aa9.47□□□□□ -0.89
UBE4B-209ENST00000487244 WDR43Q15061 677 aaKnown RBP eCLIP9.47□□□□□ -0.89
UBE4B-209ENST00000487244 CCDC87Q9NVE4 849 aa9.47□□□□□ -0.89
UBE4B-209ENST00000487244 SRP68Q9UHB9 627 aaKnown RBP9.47□□□□□ -0.89
UBE4B-209ENST00000487244 ZBTB1Q9Y2K1 713 aa9.47□□□□□ -0.89
UBE4B-209ENST00000487244 SCN7AQ01118 1682 aa9.46□□□□□ -0.89
UBE4B-209ENST00000487244 NEFMP07197 916 aa9.46□□□□□ -0.9
UBE4B-209ENST00000487244 HMGB2P26583 209 aaKnown RBP9.46□□□□□ -0.9
UBE4B-209ENST00000487244 TMPOP42166 694 aaKnown RBP9.46□□□□□ -0.9
UBE4B-209ENST00000487244 TRAPPC3LQ5T215 181 aa9.46□□□□□ -0.9
UBE4B-209ENST00000487244 VSIG10Q8N0Z9 540 aa9.46□□□□□ -0.9
UBE4B-209ENST00000487244 NLGN2Q8NFZ4 835 aa9.46□□□□□ -0.9
UBE4B-209ENST00000487244 SYT17Q9BSW7 474 aa9.46□□□□□ -0.9
UBE4B-209ENST00000487244 KIF13BQ9NQT8 1826 aa9.46□□□□□ -0.9
UBE4B-209ENST00000487244 SOS1Q07889 1333 aaPredicted RBP9.46□□□□□ -0.9
UBE4B-209ENST00000487244 KIAA1551Q9HCM1 1747 aa9.45□□□□□ -0.9
UBE4B-209ENST00000487244 BCORQ6W2J9 1755 aa9.45□□□□□ -0.9
UBE4B-209ENST00000487244 AFDNP55196 1824 aaKnown RBP9.45□□□□□ -0.9
UBE4B-209ENST00000487244 GYS1P13807 737 aa9.45□□□□□ -0.9
UBE4B-209ENST00000487244 RFC4P35249 363 aa9.45□□□□□ -0.9
UBE4B-209ENST00000487244 PIP4K2AP48426 406 aaPredicted RBP9.45□□□□□ -0.9
UBE4B-209ENST00000487244 RIPK4P57078 832 aa9.45□□□□□ -0.9
UBE4B-209ENST00000487244 NEUROD2Q15784 382 aa9.45□□□□□ -0.9
UBE4B-209ENST00000487244 FMNL2Q96PY5 1086 aa9.45□□□□□ -0.9
UBE4B-209ENST00000487244 USP42Q9H9J4 1324 aaKnown RBP9.45□□□□□ -0.9
UBE4B-209ENST00000487244 COL15A1P39059 1388 aa9.45□□□□□ -0.9
UBE4B-209ENST00000487244 N4BP2Q86UW6 1770 aaPredicted RBP9.45□□□□□ -0.9
UBE4B-209ENST00000487244 SENP3-EIF4A1A0A087X0R7 540 aa9.44□□□□□ -0.9
UBE4B-209ENST00000487244 C2orf72A6NCS6 295 aa9.44□□□□□ -0.9
UBE4B-209ENST00000487244 MMP10P09238 476 aa9.44□□□□□ -0.9
UBE4B-209ENST00000487244 CANXP27824 592 aaKnown RBP9.44□□□□□ -0.9
UBE4B-209ENST00000487244 TAF7Q15545 349 aaPredicted RBP9.44□□□□□ -0.9
UBE4B-209ENST00000487244 PAXIP1Q6ZW49 1069 aaPredicted RBP9.44□□□□□ -0.9
UBE4B-209ENST00000487244 RUNDC1Q96C34 613 aa9.44□□□□□ -0.9
UBE4B-209ENST00000487244 PNNQ9H307 717 aaKnown RBP9.44□□□□□ -0.9
UBE4B-209ENST00000487244 USP16Q9Y5T5 823 aa9.44□□□□□ -0.9
UBE4B-209ENST00000487244 UTRNP46939 3433 aa9.44□□□□□ -0.9
UBE4B-209ENST00000487244 ANP32CO43423 234 aa9.43□□□□□ -0.9
UBE4B-209ENST00000487244 A1BGP04217 495 aa9.43□□□□□ -0.9
UBE4B-209ENST00000487244 DOK7Q18PE1 504 aa9.43□□□□□ -0.9
UBE4B-209ENST00000487244 USPL1Q5W0Q7 1092 aa9.43□□□□□ -0.9
UBE4B-209ENST00000487244 CFAP44Q96MT7 982 aa9.43□□□□□ -0.9
UBE4B-209ENST00000487244 KIF3CO14782 793 aa9.42□□□□□ -0.9
UBE4B-209ENST00000487244 STARD3NLO95772 234 aa9.42□□□□□ -0.9
UBE4B-209ENST00000487244 EIF5P55010 431 aaKnown RBP9.42□□□□□ -0.9
UBE4B-209ENST00000487244 DDR1Q08345 913 aa9.42□□□□□ -0.9
UBE4B-209ENST00000487244 ZNF710Q8N1W2 664 aa9.42□□□□□ -0.9
UBE4B-209ENST00000487244 BCL2L12Q9HB09 334 aa9.42□□□□□ -0.9
UBE4B-209ENST00000487244 MRS2Q9HD23 443 aa9.42□□□□□ -0.9
UBE4B-209ENST00000487244 ZNF330Q9Y3S2 320 aaPredicted RBP9.42□□□□□ -0.9
UBE4B-209ENST00000487244 BRCA1P38398 1863 aaKnown RBP9.42□□□□□ -0.9
UBE4B-209ENST00000487244 NRXN2Q9P2S2 1712 aa9.42□□□□□ -0.9
UBE4B-209ENST00000487244 C10orf71Q711Q0 1435 aa9.41□□□□□ -0.9
UBE4B-209ENST00000487244 NBPF26B4DH59 902 aa9.41□□□□□ -0.9
UBE4B-209ENST00000487244 APAF1O14727 1248 aa9.41□□□□□ -0.9
UBE4B-209ENST00000487244 ST18O60284 1047 aa9.41□□□□□ -0.9
UBE4B-209ENST00000487244 SNRPA1P09661 255 aaKnown RBP9.41□□□□□ -0.9
UBE4B-209ENST00000487244 EIF4A1P60842 406 aaKnown RBP9.41□□□□□ -0.9
UBE4B-209ENST00000487244 NBPF10Q6P3W6 841 aaKnown RBP9.41□□□□□ -0.9
UBE4B-209ENST00000487244 NLGN1Q8N2Q7 840 aa9.41□□□□□ -0.9
UBE4B-209ENST00000487244 NBPF15Q8N660 670 aa9.41□□□□□ -0.9
UBE4B-209ENST00000487244 CHD4Q14839 1912 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms