RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 COL18A1P39060 1754 aa9.58□□□□□ -0.88
HDAC3-209ENST00000486618 GPR162Q16538 588 aa9.58□□□□□ -0.88
HDAC3-209ENST00000486618 ARHGEF25Q86VW2 580 aa9.58□□□□□ -0.88
HDAC3-209ENST00000486618 NLRP7Q8WX94 980 aa9.58□□□□□ -0.88
HDAC3-209ENST00000486618 CCDC7Q96M83 1385 aa9.58□□□□□ -0.88
HDAC3-209ENST00000486618 MAP3K5Q99683 1374 aa9.58□□□□□ -0.88
HDAC3-209ENST00000486618 CPSF1Q10570 1443 aaKnown RBP9.57□□□□□ -0.88
HDAC3-209ENST00000486618 GIGYF1O75420 1035 aaPredicted RBP9.57□□□□□ -0.88
HDAC3-209ENST00000486618 NBPF1Q3BBV0 1214 aa9.57□□□□□ -0.88
HDAC3-209ENST00000486618 KMT5BQ4FZB7 885 aa9.57□□□□□ -0.88
HDAC3-209ENST00000486618 RGPD5Q99666 1765 aa9.56□□□□□ -0.88
HDAC3-209ENST00000486618 ACTN4O43707 911 aaKnown RBP9.56□□□□□ -0.88
HDAC3-209ENST00000486618 MAP2K5Q13163 448 aa9.56□□□□□ -0.88
HDAC3-209ENST00000486618 BLOC1S3Q6QNY0 202 aa9.56□□□□□ -0.88
HDAC3-209ENST00000486618 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.56□□□□□ -0.88
HDAC3-209ENST00000486618 NKX2-3Q8TAU0 364 aa9.56□□□□□ -0.88
HDAC3-209ENST00000486618 SLC16A10Q8TF71 515 aa9.56□□□□□ -0.88
HDAC3-209ENST00000486618 EVC2Q86UK5 1308 aa9.56□□□□□ -0.88
HDAC3-209ENST00000486618 ZPR1O75312 459 aa9.55□□□□□ -0.88
HDAC3-209ENST00000486618 POLD1P28340 1107 aa9.55□□□□□ -0.88
HDAC3-209ENST00000486618 TTC21BQ7Z4L5 1316 aa9.55□□□□□ -0.88
HDAC3-209ENST00000486618 TTC21AQ8NDW8 1320 aa9.55□□□□□ -0.88
HDAC3-209ENST00000486618 QRICH2Q9H0J4 1663 aa9.55□□□□□ -0.88
HDAC3-209ENST00000486618 PPP1R18Q6NYC8 613 aa9.54□□□□□ -0.88
HDAC3-209ENST00000486618 ACSBG1Q96GR2 724 aa9.54□□□□□ -0.88
HDAC3-209ENST00000486618 TNS2Q63HR2 1409 aa9.54□□□□□ -0.88
HDAC3-209ENST00000486618 PIK3C2AO00443 1686 aa9.54□□□□□ -0.88
HDAC3-209ENST00000486618 NHSQ6T4R5 1651 aa9.53□□□□□ -0.88
HDAC3-209ENST00000486618 IL2RBP14784 551 aa9.53□□□□□ -0.88
HDAC3-209ENST00000486618 NLRP2Q9NX02 1062 aa9.53□□□□□ -0.88
HDAC3-209ENST00000486618 ABCC6O95255 1503 aa9.52□□□□□ -0.88
HDAC3-209ENST00000486618 GRIN3BO60391 1043 aa9.52□□□□□ -0.89
HDAC3-209ENST00000486618 NEFLP07196 543 aa9.52□□□□□ -0.89
HDAC3-209ENST00000486618 SLC27A3Q5K4L6 730 aa9.52□□□□□ -0.89
HDAC3-209ENST00000486618 TRPM1Q7Z4N2 1603 aa9.52□□□□□ -0.89
HDAC3-209ENST00000486618 DDX11L8A8MPP1 907 aa9.51□□□□□ -0.89
HDAC3-209ENST00000486618 TLL1O43897 1013 aa9.51□□□□□ -0.89
HDAC3-209ENST00000486618 ZNF827Q17R98 1081 aa9.51□□□□□ -0.89
HDAC3-209ENST00000486618 TAF7LQ5H9L4 462 aa9.51□□□□□ -0.89
HDAC3-209ENST00000486618 RDH13Q8NBN7 331 aa9.51□□□□□ -0.89
HDAC3-209ENST00000486618 PUS7Q96PZ0 661 aaKnown RBP9.51□□□□□ -0.89
HDAC3-209ENST00000486618 BTAF1O14981 1849 aa9.51□□□□□ -0.89
HDAC3-209ENST00000486618 PAPPAQ13219 1627 aa9.5□□□□□ -0.89
HDAC3-209ENST00000486618 IRF6O14896 467 aa9.5□□□□□ -0.89
HDAC3-209ENST00000486618 LRRC4BQ9NT99 713 aa9.5□□□□□ -0.89
HDAC3-209ENST00000486618 KTN1Q86UP2 1357 aaKnown RBP9.5□□□□□ -0.89
HDAC3-209ENST00000486618 QSER1Q2KHR3 1735 aa9.49□□□□□ -0.89
HDAC3-209ENST00000486618 PDE4CQ08493 712 aa9.49□□□□□ -0.89
HDAC3-209ENST00000486618 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.49□□□□□ -0.89
HDAC3-209ENST00000486618 TFCP2L1Q9NZI6 479 aa9.49□□□□□ -0.89
HDAC3-209ENST00000486618 NFAT5O94916 1531 aa9.49□□□□□ -0.89
HDAC3-209ENST00000486618 SULF1Q8IWU6 871 aa9.48□□□□□ -0.89
HDAC3-209ENST00000486618 ANKRD24Q8TF21 1146 aa9.48□□□□□ -0.89
HDAC3-209ENST00000486618 CCDC102AQ96A19 550 aa9.48□□□□□ -0.89
HDAC3-209ENST00000486618 PNPLA7Q6ZV29 1317 aa9.48□□□□□ -0.89
HDAC3-209ENST00000486618 HMGB2P26583 209 aaKnown RBP9.47□□□□□ -0.89
HDAC3-209ENST00000486618 PUS10Q3MIT2 529 aaKnown RBP9.47□□□□□ -0.89
HDAC3-209ENST00000486618 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.47□□□□□ -0.89
HDAC3-209ENST00000486618 DDX54Q8TDD1 881 aaKnown RBP9.47□□□□□ -0.89
HDAC3-209ENST00000486618 IRX2Q9BZI1 471 aaPredicted RBP9.47□□□□□ -0.89
HDAC3-209ENST00000486618 COL24A1Q17RW2 1714 aa9.47□□□□□ -0.89
HDAC3-209ENST00000486618 USP31Q70CQ4 1352 aa9.47□□□□□ -0.89
HDAC3-209ENST00000486618 UTRNP46939 3433 aa9.47□□□□□ -0.89
HDAC3-209ENST00000486618 IGSF3O75054 1194 aa9.46□□□□□ -0.9
HDAC3-209ENST00000486618 NR1I2O75469 434 aa9.46□□□□□ -0.9
HDAC3-209ENST00000486618 NLGN2Q8NFZ4 835 aa9.46□□□□□ -0.9
HDAC3-209ENST00000486618 SYTL4Q96C24 671 aaPredicted RBP9.46□□□□□ -0.9
HDAC3-209ENST00000486618 SHANK3Q9BYB0 1731 aa9.45□□□□□ -0.9
HDAC3-209ENST00000486618 LTN1O94822 1766 aa9.45□□□□□ -0.9
HDAC3-209ENST00000486618 GGCXP38435 758 aa9.45□□□□□ -0.9
HDAC3-209ENST00000486618 GCGRP47871 477 aa9.45□□□□□ -0.9
HDAC3-209ENST00000486618 FUT2Q10981 343 aa9.45□□□□□ -0.9
HDAC3-209ENST00000486618 HDGFL2Q7Z4V5 671 aaPredicted RBP9.45□□□□□ -0.9
HDAC3-209ENST00000486618 PRKD2Q9BZL6 878 aa9.45□□□□□ -0.9
HDAC3-209ENST00000486618 GPBP1L1Q9HC44 474 aaPredicted RBP9.45□□□□□ -0.9
HDAC3-209ENST00000486618 YBX3P16989 372 aaKnown RBP eCLIP9.44□□□□□ -0.9
HDAC3-209ENST00000486618 MDM2Q00987 491 aaPredicted RBP9.44□□□□□ -0.9
HDAC3-209ENST00000486618 NME9Q86XW9 330 aa9.44□□□□□ -0.9
HDAC3-209ENST00000486618 SCUBE3Q8IX30 993 aa9.44□□□□□ -0.9
HDAC3-209ENST00000486618 L3MBTL2Q969R5 705 aa9.44□□□□□ -0.9
HDAC3-209ENST00000486618 TMUB1Q9BVT8 246 aa9.44□□□□□ -0.9
HDAC3-209ENST00000486618 MON2Q7Z3U7 1717 aa9.44□□□□□ -0.9
HDAC3-209ENST00000486618 USP54Q70EL1 1684 aa9.43□□□□□ -0.9
HDAC3-209ENST00000486618 ATP10DQ9P241 1426 aa9.43□□□□□ -0.9
HDAC3-209ENST00000486618 ROCK2O75116 1388 aaKnown RBP9.43□□□□□ -0.9
HDAC3-209ENST00000486618 ANKRD36BQ8N2N9 1353 aa9.43□□□□□ -0.9
HDAC3-209ENST00000486618 HSPA6P17066 643 aa9.43□□□□□ -0.9
HDAC3-209ENST00000486618 MORN1Q5T089 497 aa9.43□□□□□ -0.9
HDAC3-209ENST00000486618 FLAD1Q8NFF5 587 aa9.43□□□□□ -0.9
HDAC3-209ENST00000486618 IP6K1Q92551 441 aa9.43□□□□□ -0.9
HDAC3-209ENST00000486618 CCNL1Q9UK58 526 aaPredicted RBP9.43□□□□□ -0.9
HDAC3-209ENST00000486618 CD2APQ9Y5K6 639 aa9.43□□□□□ -0.9
HDAC3-209ENST00000486618 TUBGCP6Q96RT7 1819 aa9.42□□□□□ -0.9
HDAC3-209ENST00000486618 RNF223E7ERA6 249 aa9.42□□□□□ -0.9
HDAC3-209ENST00000486618 ADH1BP00325 375 aa9.42□□□□□ -0.9
HDAC3-209ENST00000486618 CD46P15529 392 aa9.42□□□□□ -0.9
HDAC3-209ENST00000486618 KCNQ4P56696 695 aa9.42□□□□□ -0.9
HDAC3-209ENST00000486618 COL23A1Q86Y22 540 aaPredicted RBP9.42□□□□□ -0.9
HDAC3-209ENST00000486618 ZCRB1Q8TBF4 217 aaKnown RBP9.42□□□□□ -0.9
HDAC3-209ENST00000486618 TMC1Q8TDI8 760 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms