RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TTLL7Q6ZT98 887 aa19.12■□□□□ 0.65
USP4-212ENST00000486549 C8orf58Q8NAV2 365 aa19.12■□□□□ 0.65
USP4-212ENST00000486549 ZNF652Q9Y2D9 606 aa19.12■□□□□ 0.65
USP4-212ENST00000486549 NUP98P52948 1817 aa19.11■□□□□ 0.65
USP4-212ENST00000486549 NRXN2Q9P2S2 1712 aa19.11■□□□□ 0.65
USP4-212ENST00000486549 SERPINB2P05120 415 aa19.11■□□□□ 0.65
USP4-212ENST00000486549 WDR63Q8IWG1 891 aa19.11■□□□□ 0.65
USP4-212ENST00000486549 ZNF784Q8NCA9 323 aaPredicted RBP19.11■□□□□ 0.65
USP4-212ENST00000486549 CHPF2Q9P2E5 772 aa19.11■□□□□ 0.65
USP4-212ENST00000486549 UTRNP46939 3433 aa19.11■□□□□ 0.65
USP4-212ENST00000486549 KIAA1551Q9HCM1 1747 aa19.11■□□□□ 0.65
USP4-212ENST00000486549 FANCIQ9NVI1 1328 aa19.1■□□□□ 0.65
USP4-212ENST00000486549 YBX3P16989 372 aaKnown RBP eCLIP19.1■□□□□ 0.65
USP4-212ENST00000486549 HLFQ16534 295 aa19.1■□□□□ 0.65
USP4-212ENST00000486549 ZBTB3Q9H5J0 574 aa19.1■□□□□ 0.65
USP4-212ENST00000486549 WWC3Q9ULE0 1092 aa19.1■□□□□ 0.65
USP4-212ENST00000486549 CARMIL3Q8ND23 1372 aa19.09■□□□□ 0.65
USP4-212ENST00000486549 MAP3K15Q6ZN16 1313 aa19.09■□□□□ 0.65
USP4-212ENST00000486549 AIMP1Q12904 312 aaKnown RBP19.09■□□□□ 0.65
USP4-212ENST00000486549 TSPYL6Q8N831 410 aa19.09■□□□□ 0.65
USP4-212ENST00000486549 SETDB2Q96T68 719 aa19.09■□□□□ 0.65
USP4-212ENST00000486549 DDX21Q9NR30 783 aaKnown RBP eCLIP19.09■□□□□ 0.65
USP4-212ENST00000486549 PXDNLA1KZ92 1463 aa19.09■□□□□ 0.65
USP4-212ENST00000486549 CLEC4GQ6UXB4 293 aa19.08■□□□□ 0.64
USP4-212ENST00000486549 LRP10Q7Z4F1 713 aa19.08■□□□□ 0.64
USP4-212ENST00000486549 XAGE3Q8WTP9 111 aa19.08■□□□□ 0.64
USP4-212ENST00000486549 NPHP1O15259 732 aa19.07■□□□□ 0.64
USP4-212ENST00000486549 COPS6Q7L5N1 327 aa19.07■□□□□ 0.64
USP4-212ENST00000486549 SPINK5Q9NQ38 1064 aaPredicted RBP19.07■□□□□ 0.64
USP4-212ENST00000486549 DBF4Q9UBU7 674 aaPredicted RBP19.07■□□□□ 0.64
USP4-212ENST00000486549 NIP7Q9Y221 180 aaKnown RBP eCLIP19.07■□□□□ 0.64
USP4-212ENST00000486549 FAM177BA6PVY3 158 aa19.06■□□□□ 0.64
USP4-212ENST00000486549 ERVV-1B6SEH8 477 aa19.06■□□□□ 0.64
USP4-212ENST00000486549 CCDC24Q8N4L8 307 aa19.06■□□□□ 0.64
USP4-212ENST00000486549 A0A0G2JLW4 131 aa19.05■□□□□ 0.64
USP4-212ENST00000486549 DPEP1P16444 411 aa19.05■□□□□ 0.64
USP4-212ENST00000486549 TWISTNBQ3B726 338 aaPredicted RBP19.05■□□□□ 0.64
USP4-212ENST00000486549 CNBD1Q8NA66 436 aa19.05■□□□□ 0.64
USP4-212ENST00000486549 MYH16Q9H6N6 1097 aa19.05■□□□□ 0.64
USP4-212ENST00000486549 ANKRD31Q8N7Z5 1873 aa19.05■□□□□ 0.64
USP4-212ENST00000486549 ZNF521Q96K83 1311 aa19.04■□□□□ 0.64
USP4-212ENST00000486549 ANKRD36CQ5JPF3 1778 aa19.04■□□□□ 0.64
USP4-212ENST00000486549 RGL2O15211 777 aa19.04■□□□□ 0.64
USP4-212ENST00000486549 GPTP24298 496 aa19.04■□□□□ 0.64
USP4-212ENST00000486549 GOLGA2Q08379 1002 aa19.04■□□□□ 0.64
USP4-212ENST00000486549 PRR5LQ6MZQ0 368 aa19.04■□□□□ 0.64
USP4-212ENST00000486549 NBPF5PQ86XG9 351 aaPredicted RBP19.04■□□□□ 0.64
USP4-212ENST00000486549 GOLGB1Q14789 3259 aaKnown RBP19.03■□□□□ 0.64
USP4-212ENST00000486549 ATP10DQ9P241 1426 aa19.03■□□□□ 0.64
USP4-212ENST00000486549 TCERG1O14776 1098 aaKnown RBP19.03■□□□□ 0.64
USP4-212ENST00000486549 CHRNA5P30532 468 aa19.03■□□□□ 0.64
USP4-212ENST00000486549 EXOSC9Q06265 439 aaKnown RBP19.03■□□□□ 0.64
USP4-212ENST00000486549 CCDC30Q5VVM6 783 aa19.03■□□□□ 0.64
USP4-212ENST00000486549 HYPKQ9NX55 129 aa19.03■□□□□ 0.64
USP4-212ENST00000486549 BRCA1P38398 1863 aaKnown RBP19.03■□□□□ 0.64
USP4-212ENST00000486549 GIGYF2Q6Y7W6 1299 aaKnown RBP19.02■□□□□ 0.64
USP4-212ENST00000486549 ARFGEF2Q9Y6D5 1785 aa19.01■□□□□ 0.63
USP4-212ENST00000486549 ST5P78524 1137 aa19.01■□□□□ 0.63
USP4-212ENST00000486549 CHMP4AQ9BY43 222 aa19.01■□□□□ 0.63
USP4-212ENST00000486549 PHAXQ9H814 394 aaKnown RBP19.01■□□□□ 0.63
USP4-212ENST00000486549 UBN2Q6ZU65 1347 aa19■□□□□ 0.63
USP4-212ENST00000486549 STK31Q9BXU1 1019 aa19■□□□□ 0.63
USP4-212ENST00000486549 DLEC1Q9Y238 1755 aa19■□□□□ 0.63
USP4-212ENST00000486549 COL11A2P13942 1736 aaPredicted RBP19■□□□□ 0.63
USP4-212ENST00000486549 GTF2E1P29083 439 aaPredicted RBP18.99■□□□□ 0.63
USP4-212ENST00000486549 TPTE2Q6XPS3 522 aa18.99■□□□□ 0.63
USP4-212ENST00000486549 C2CD5Q86YS7 1000 aa18.99■□□□□ 0.63
USP4-212ENST00000486549 PIM2Q9P1W9 311 aa18.99■□□□□ 0.63
USP4-212ENST00000486549 BCS1LQ9Y276 419 aa18.99■□□□□ 0.63
USP4-212ENST00000486549 KCNA3P22001 575 aa18.98■□□□□ 0.63
USP4-212ENST00000486549 ANKRD13DQ6ZTN6 518 aa18.98■□□□□ 0.63
USP4-212ENST00000486549 ZNF34Q8IZ26 560 aa18.98■□□□□ 0.63
USP4-212ENST00000486549 PLBD2Q8NHP8 589 aa18.98■□□□□ 0.63
USP4-212ENST00000486549 E9PSI1 815 aa18.97■□□□□ 0.63
USP4-212ENST00000486549 VAMP4O75379 141 aa18.97■□□□□ 0.63
USP4-212ENST00000486549 PDE6BP35913 854 aa18.97■□□□□ 0.63
USP4-212ENST00000486549 HSP90AB3PQ58FF7 597 aa18.97■□□□□ 0.63
USP4-212ENST00000486549 SUSD4Q5VX71 490 aa18.97■□□□□ 0.63
USP4-212ENST00000486549 NUTM1Q86Y26 1132 aa18.97■□□□□ 0.63
USP4-212ENST00000486549 BRIP1Q9BX63 1249 aa18.97■□□□□ 0.63
USP4-212ENST00000486549 CACNA1SQ13698 1873 aa18.97■□□□□ 0.63
USP4-212ENST00000486549 TNRC6CQ9HCJ0 1690 aaKnown RBP18.96■□□□□ 0.63
USP4-212ENST00000486549 H0YIN7 160 aa18.96■□□□□ 0.63
USP4-212ENST00000486549 DALRD3Q5D0E6 543 aaKnown RBP18.96■□□□□ 0.63
USP4-212ENST00000486549 RIC3Q7Z5B4 369 aa18.96■□□□□ 0.63
USP4-212ENST00000486549 ZNF428Q96B54 188 aa18.96■□□□□ 0.63
USP4-212ENST00000486549 CDCA7LQ96GN5 454 aa18.96■□□□□ 0.63
USP4-212ENST00000486549 NYXQ9GZU5 481 aa18.96■□□□□ 0.63
USP4-212ENST00000486549 PDZRN3Q9UPQ7 1066 aa18.96■□□□□ 0.63
USP4-212ENST00000486549 ARFGEF1Q9Y6D6 1849 aa18.95■□□□□ 0.62
USP4-212ENST00000486549 ABCC12Q96J65 1359 aa18.95■□□□□ 0.62
USP4-212ENST00000486549 TCIRG1Q13488 830 aa18.95■□□□□ 0.62
USP4-212ENST00000486549 ERFEQ4G0M1 354 aa18.95■□□□□ 0.62
USP4-212ENST00000486549 PARP10Q53GL7 1025 aa18.95■□□□□ 0.62
USP4-212ENST00000486549 CACNA1FO60840 1977 aa18.95■□□□□ 0.62
USP4-212ENST00000486549 IBTKQ9P2D0 1353 aaPredicted RBP18.94■□□□□ 0.62
USP4-212ENST00000486549 NTSR2O95665 410 aa18.94■□□□□ 0.62
USP4-212ENST00000486549 DDX58O95786 925 aaKnown RBP18.94■□□□□ 0.62
USP4-212ENST00000486549 SLC4A2P04920 1241 aa18.94■□□□□ 0.62
USP4-212ENST00000486549 HNRNPUQ00839 825 aaKnown RBP eCLIP18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms