RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ZCCHC2Q9C0B9 1178 aaKnown RBP11.38□□□□□ -0.59
USP40-213ENST00000483216 ANKIB1Q9P2G1 1089 aa11.38□□□□□ -0.59
USP40-213ENST00000483216 SAMD5Q5TGI4 173 aa11.37□□□□□ -0.59
USP40-213ENST00000483216 PHLDB3Q6NSJ2 640 aa11.37□□□□□ -0.59
USP40-213ENST00000483216 TRERF1Q96PN7 1200 aa11.37□□□□□ -0.59
USP40-213ENST00000483216 CFHR5Q9BXR6 569 aa11.37□□□□□ -0.59
USP40-213ENST00000483216 NEUROD4Q9HD90 331 aa11.37□□□□□ -0.59
USP40-213ENST00000483216 PCDHGC4Q9Y5F7 938 aa11.37□□□□□ -0.59
USP40-213ENST00000483216 GJA3Q9Y6H8 435 aa11.37□□□□□ -0.59
USP40-213ENST00000483216 B4GALNT3Q6L9W6 998 aa11.36□□□□□ -0.59
USP40-213ENST00000483216 KLRG1Q96E93 195 aa11.36□□□□□ -0.59
USP40-213ENST00000483216 SUSD3Q96L08 255 aa11.36□□□□□ -0.59
USP40-213ENST00000483216 MKNK1Q9BUB5 465 aa11.36□□□□□ -0.59
USP40-213ENST00000483216 NDFIP2Q9NV92 336 aa11.36□□□□□ -0.59
USP40-213ENST00000483216 LRRC69Q6ZNQ3 347 aa11.35□□□□□ -0.59
USP40-213ENST00000483216 CAPN12Q6ZSI9 719 aa11.35□□□□□ -0.59
USP40-213ENST00000483216 PHF24Q9UPV7 400 aa11.35□□□□□ -0.59
USP40-213ENST00000483216 GPR25O00155 361 aa11.34□□□□□ -0.59
USP40-213ENST00000483216 ATXN7O15265 892 aaPredicted RBP11.34□□□□□ -0.59
USP40-213ENST00000483216 GMPRP36959 345 aa11.34□□□□□ -0.59
USP40-213ENST00000483216 ATXN7L1Q9ULK2 861 aaPredicted RBP11.34□□□□□ -0.59
USP40-213ENST00000483216 BNIP3LO60238 219 aa11.33□□□□□ -0.6
USP40-213ENST00000483216 FAM157BP0CG42 384 aa11.33□□□□□ -0.6
USP40-213ENST00000483216 C11orf91Q3C1V1 193 aa11.33□□□□□ -0.6
USP40-213ENST00000483216 COX20Q5RI15 118 aa11.33□□□□□ -0.6
USP40-213ENST00000483216 C16orf46Q6P387 395 aa11.33□□□□□ -0.6
USP40-213ENST00000483216 HSH2DQ96JZ2 352 aa11.33□□□□□ -0.6
USP40-213ENST00000483216 COL25A1Q9BXS0 654 aaPredicted RBP11.33□□□□□ -0.6
USP40-213ENST00000483216 LRFN2Q9ULH4 789 aa11.33□□□□□ -0.6
USP40-213ENST00000483216 DGKZQ13574 1117 aa11.32□□□□□ -0.6
USP40-213ENST00000483216 GAS6Q14393 721 aa11.32□□□□□ -0.6
USP40-213ENST00000483216 IER5Q5VY09 327 aa11.32□□□□□ -0.6
USP40-213ENST00000483216 ZNF280CQ8ND82 737 aa11.32□□□□□ -0.6
USP40-213ENST00000483216 TNP2Q05952 138 aa11.31□□□□□ -0.6
USP40-213ENST00000483216 NAA30Q147X3 362 aaPredicted RBP11.31□□□□□ -0.6
USP40-213ENST00000483216 SAP130Q9H0E3 1048 aa11.31□□□□□ -0.6
USP40-213ENST00000483216 KLK14Q9P0G3 267 aa11.31□□□□□ -0.6
USP40-213ENST00000483216 BCS1LQ9Y276 419 aa11.31□□□□□ -0.6
USP40-213ENST00000483216 TGFBR3LH3BV60 316 aa11.3□□□□□ -0.6
USP40-213ENST00000483216 WIPF1O43516 503 aa11.3□□□□□ -0.6
USP40-213ENST00000483216 RNFT1Q5M7Z0 435 aa11.3□□□□□ -0.6
USP40-213ENST00000483216 ABHD17AQ96GS6 310 aa11.3□□□□□ -0.6
USP40-213ENST00000483216 SEPT3Q9UH03 358 aa11.3□□□□□ -0.6
USP40-213ENST00000483216 EFSO43281 561 aa11.29□□□□□ -0.6
USP40-213ENST00000483216 MAPTP10636 758 aaKnown RBP11.29□□□□□ -0.6
USP40-213ENST00000483216 SCNN1AP37088 669 aa11.29□□□□□ -0.6
USP40-213ENST00000483216 KRT76Q01546 638 aa11.29□□□□□ -0.6
USP40-213ENST00000483216 LAMC2Q13753 1193 aa11.29□□□□□ -0.6
USP40-213ENST00000483216 DMGDHQ9UI17 866 aaKnown RBP11.29□□□□□ -0.6
USP40-213ENST00000483216 MTMR7Q9Y216 660 aa11.29□□□□□ -0.6
USP40-213ENST00000483216 KHNYNO15037 678 aaKnown RBP11.28□□□□□ -0.6
USP40-213ENST00000483216 BTLAQ7Z6A9 289 aa11.28□□□□□ -0.6
USP40-213ENST00000483216 MBIPQ9NS73 344 aa11.28□□□□□ -0.6
USP40-213ENST00000483216 DCDC2BA2VCK2 349 aa11.27□□□□□ -0.61
USP40-213ENST00000483216 FGFR3P22607 806 aa11.27□□□□□ -0.61
USP40-213ENST00000483216 TYRO3Q06418 890 aa11.27□□□□□ -0.61
USP40-213ENST00000483216 IFT43Q96FT9 208 aa11.27□□□□□ -0.61
USP40-213ENST00000483216 CEP63Q96MT8 703 aa11.27□□□□□ -0.61
USP40-213ENST00000483216 CNTNAP3BQ96NU0 1288 aa11.27□□□□□ -0.61
USP40-213ENST00000483216 TRAIPQ9BWF2 469 aa11.27□□□□□ -0.61
USP40-213ENST00000483216 CNTNAP3Q9BZ76 1288 aa11.27□□□□□ -0.61
USP40-213ENST00000483216 TNFRSF10BO14763 440 aa11.26□□□□□ -0.61
USP40-213ENST00000483216 BRD1O95696 1058 aa11.26□□□□□ -0.61
USP40-213ENST00000483216 MX2P20592 715 aa11.26□□□□□ -0.61
USP40-213ENST00000483216 BRD2P25440 801 aaKnown RBP11.26□□□□□ -0.61
USP40-213ENST00000483216 ARID4AP29374 1257 aaPredicted RBP11.26□□□□□ -0.61
USP40-213ENST00000483216 FAM182BQ5T319 152 aa11.26□□□□□ -0.61
USP40-213ENST00000483216 HCN2Q9UL51 889 aa11.26□□□□□ -0.61
USP40-213ENST00000483216 KCNQ4P56696 695 aa11.25□□□□□ -0.61
USP40-213ENST00000483216 SRSF11Q05519 484 aaKnown RBP11.25□□□□□ -0.61
USP40-213ENST00000483216 HELQQ8TDG4 1101 aa11.25□□□□□ -0.61
USP40-213ENST00000483216 BRD7Q9NPI1 651 aa11.25□□□□□ -0.61
USP40-213ENST00000483216 MICAL2O94851 1124 aa11.24□□□□□ -0.61
USP40-213ENST00000483216 GTF3C2Q8WUA4 911 aaPredicted RBP11.24□□□□□ -0.61
USP40-213ENST00000483216 MARK1Q9P0L2 795 aa11.24□□□□□ -0.61
USP40-213ENST00000483216 STIM2Q9P246 746 aa11.24□□□□□ -0.61
USP40-213ENST00000483216 NSFL1CQ9UNZ2 370 aaKnown RBP11.24□□□□□ -0.61
USP40-213ENST00000483216 CTBSQ01459 385 aa11.23□□□□□ -0.61
USP40-213ENST00000483216 STRN4Q9NRL3 753 aa11.23□□□□□ -0.61
USP40-213ENST00000483216 CD33P20138 364 aa11.22□□□□□ -0.61
USP40-213ENST00000483216 INPP5BP32019 993 aa11.22□□□□□ -0.61
USP40-213ENST00000483216 IDH3AP50213 366 aa11.22□□□□□ -0.61
USP40-213ENST00000483216 TXNDC2Q86VQ3 553 aa11.22□□□□□ -0.61
USP40-213ENST00000483216 TREML1Q86YW5 311 aa11.22□□□□□ -0.61
USP40-213ENST00000483216 ETFBKMTQ8IXQ9 262 aa11.22□□□□□ -0.61
USP40-213ENST00000483216 IGF1RP08069 1367 aa11.21□□□□□ -0.61
USP40-213ENST00000483216 SLURP2P0DP57 97 aa11.21□□□□□ -0.61
USP40-213ENST00000483216 MAP2K3P46734 347 aa11.21□□□□□ -0.61
USP40-213ENST00000483216 SFSWAPQ12872 951 aaKnown RBP11.21□□□□□ -0.61
USP40-213ENST00000483216 KCNH4Q9UQ05 1017 aa11.21□□□□□ -0.61
USP40-213ENST00000483216 DNMT3AQ9Y6K1 912 aaPredicted RBP11.21□□□□□ -0.61
USP40-213ENST00000483216 C2CD2LO14523 706 aa11.2□□□□□ -0.62
USP40-213ENST00000483216 BMP4P12644 408 aa11.2□□□□□ -0.62
USP40-213ENST00000483216 ARSDP51689 593 aa11.2□□□□□ -0.62
USP40-213ENST00000483216 FAM26DQ5JW98 314 aa11.2□□□□□ -0.62
USP40-213ENST00000483216 ABTB2Q8N961 1025 aa11.2□□□□□ -0.62
USP40-213ENST00000483216 OPLAHO14841 1288 aa11.19□□□□□ -0.62
USP40-213ENST00000483216 ADAMTS2O95450 1211 aa11.19□□□□□ -0.62
USP40-213ENST00000483216 EPB42P16452 691 aa11.19□□□□□ -0.62
USP40-213ENST00000483216 EGFL7Q9UHF1 273 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms