RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 N4BP2Q86UW6 1770 aaPredicted RBP15.79■□□□□ 0.12
SYNE1-223ENST00000476519 SRGNP10124 158 aa15.78■□□□□ 0.12
SYNE1-223ENST00000476519 HLFQ16534 295 aa15.78■□□□□ 0.12
SYNE1-223ENST00000476519 STYK1Q6J9G0 422 aa15.78■□□□□ 0.12
SYNE1-223ENST00000476519 KIF6Q6ZMV9 814 aa15.78■□□□□ 0.12
SYNE1-223ENST00000476519 CCDC24Q8N4L8 307 aa15.78■□□□□ 0.12
SYNE1-223ENST00000476519 NGEFQ8N5V2 710 aa15.78■□□□□ 0.12
SYNE1-223ENST00000476519 MAP3K15Q6ZN16 1313 aa15.77■□□□□ 0.12
SYNE1-223ENST00000476519 KLRG2A4D1S0 409 aaPredicted RBP15.77■□□□□ 0.12
SYNE1-223ENST00000476519 MASTLQ96GX5 879 aa15.77■□□□□ 0.12
SYNE1-223ENST00000476519 NRXN2Q9P2S2 1712 aa15.77■□□□□ 0.11
SYNE1-223ENST00000476519 MYL6BP14649 208 aa15.76■□□□□ 0.11
SYNE1-223ENST00000476519 EIF2S2P20042 333 aaKnown RBP15.76■□□□□ 0.11
SYNE1-223ENST00000476519 LMNB1P20700 586 aa15.76■□□□□ 0.11
SYNE1-223ENST00000476519 TTLL7Q6ZT98 887 aa15.76■□□□□ 0.11
SYNE1-223ENST00000476519 RNF181Q9P0P0 153 aa15.76■□□□□ 0.11
SYNE1-223ENST00000476519 GTF2E1P29083 439 aaPredicted RBP15.75■□□□□ 0.11
SYNE1-223ENST00000476519 NYXQ9GZU5 481 aa15.75■□□□□ 0.11
SYNE1-223ENST00000476519 ZC3H4Q9UPT8 1303 aaKnown RBP15.74■□□□□ 0.11
SYNE1-223ENST00000476519 ZNF316A6NFI3 1004 aaPredicted RBP15.74■□□□□ 0.11
SYNE1-223ENST00000476519 KIF3CO14782 793 aa15.74■□□□□ 0.11
SYNE1-223ENST00000476519 NPR1P16066 1061 aa15.74■□□□□ 0.11
SYNE1-223ENST00000476519 PDIA6Q15084 440 aa15.74■□□□□ 0.11
SYNE1-223ENST00000476519 SOGA3Q5TF21 947 aa15.74■□□□□ 0.11
SYNE1-223ENST00000476519 CFAP44Q96MT7 982 aa15.74■□□□□ 0.11
SYNE1-223ENST00000476519 KDM2BQ8NHM5 1336 aa15.73■□□□□ 0.11
SYNE1-223ENST00000476519 SENP3-EIF4A1A0A087X0R7 540 aa15.73■□□□□ 0.11
SYNE1-223ENST00000476519 APAF1O14727 1248 aa15.73■□□□□ 0.11
SYNE1-223ENST00000476519 C21orf2O43822 256 aa15.73■□□□□ 0.11
SYNE1-223ENST00000476519 CALD1Q05682 793 aaKnown RBP15.73■□□□□ 0.11
SYNE1-223ENST00000476519 LRP10Q7Z4F1 713 aa15.73■□□□□ 0.11
SYNE1-223ENST00000476519 LAS1LQ9Y4W2 734 aaKnown RBP15.73■□□□□ 0.11
SYNE1-223ENST00000476519 AFDNP55196 1824 aaKnown RBP15.73■□□□□ 0.11
SYNE1-223ENST00000476519 BRCA1P38398 1863 aaKnown RBP15.72■□□□□ 0.11
SYNE1-223ENST00000476519 HOXB7P09629 217 aa15.72■□□□□ 0.11
SYNE1-223ENST00000476519 ALDH1B1P30837 517 aa15.72■□□□□ 0.11
SYNE1-223ENST00000476519 GIGYF2Q6Y7W6 1299 aaKnown RBP15.72■□□□□ 0.11
SYNE1-223ENST00000476519 ZNF34Q8IZ26 560 aa15.72■□□□□ 0.11
SYNE1-223ENST00000476519 ZBTB3Q9H5J0 574 aa15.72■□□□□ 0.11
SYNE1-223ENST00000476519 SCN7AQ01118 1682 aa15.72■□□□□ 0.11
SYNE1-223ENST00000476519 DLG5Q8TDM6 1919 aa15.71■□□□□ 0.11
SYNE1-223ENST00000476519 FAM177BA6PVY3 158 aa15.71■□□□□ 0.11
SYNE1-223ENST00000476519 NFKBIEO00221 500 aa15.71■□□□□ 0.11
SYNE1-223ENST00000476519 TOMM70O94826 608 aa15.71■□□□□ 0.11
SYNE1-223ENST00000476519 RASSF7Q02833 373 aa15.71■□□□□ 0.11
SYNE1-223ENST00000476519 PARP10Q53GL7 1025 aa15.71■□□□□ 0.11
SYNE1-223ENST00000476519 PRPF40BQ6NWY9 871 aaKnown RBP15.71■□□□□ 0.11
SYNE1-223ENST00000476519 C7orf43Q8WVR3 580 aa15.71■□□□□ 0.11
SYNE1-223ENST00000476519 DDX21Q9NR30 783 aaKnown RBP eCLIP15.71■□□□□ 0.11
SYNE1-223ENST00000476519 ARFGEF1Q9Y6D6 1849 aa15.71■□□□□ 0.1
SYNE1-223ENST00000476519 KDM3BQ7LBC6 1761 aa15.7■□□□□ 0.1
SYNE1-223ENST00000476519 ZNF853P0CG23 659 aa15.7■□□□□ 0.1
SYNE1-223ENST00000476519 PROSER3Q2NL68 480 aa15.7■□□□□ 0.1
SYNE1-223ENST00000476519 HSP90AB3PQ58FF7 597 aa15.7■□□□□ 0.1
SYNE1-223ENST00000476519 COPS6Q7L5N1 327 aa15.7■□□□□ 0.1
SYNE1-223ENST00000476519 PPP1R42Q7Z4L9 355 aa15.7■□□□□ 0.1
SYNE1-223ENST00000476519 LTBP3Q9NS15 1303 aa15.69■□□□□ 0.1
SYNE1-223ENST00000476519 GPTP24298 496 aa15.69■□□□□ 0.1
SYNE1-223ENST00000476519 PRELPP51888 382 aa15.69■□□□□ 0.1
SYNE1-223ENST00000476519 CRY2Q49AN0 593 aa15.69■□□□□ 0.1
SYNE1-223ENST00000476519 SUSD4Q5VX71 490 aa15.69■□□□□ 0.1
SYNE1-223ENST00000476519 TAOK3Q9H2K8 898 aa15.69■□□□□ 0.1
SYNE1-223ENST00000476519 NMRK2Q9NPI5 230 aa15.69■□□□□ 0.1
SYNE1-223ENST00000476519 IFT57Q9NWB7 429 aa15.69■□□□□ 0.1
SYNE1-223ENST00000476519 ZNF219Q9P2Y4 722 aaPredicted RBP15.69■□□□□ 0.1
SYNE1-223ENST00000476519 IBTKQ9P2D0 1353 aaPredicted RBP15.69■□□□□ 0.1
SYNE1-223ENST00000476519 CEP350Q5VT06 3117 aa15.68■□□□□ 0.1
SYNE1-223ENST00000476519 GLTPD2A6NH11 291 aa15.68■□□□□ 0.1
SYNE1-223ENST00000476519 GNAI1P63096 354 aa15.68■□□□□ 0.1
SYNE1-223ENST00000476519 KRT24Q2M2I5 525 aa15.68■□□□□ 0.1
SYNE1-223ENST00000476519 ERFEQ4G0M1 354 aa15.68■□□□□ 0.1
SYNE1-223ENST00000476519 NUTM1Q86Y26 1132 aa15.68■□□□□ 0.1
SYNE1-223ENST00000476519 NECTIN2Q92692 538 aa15.68■□□□□ 0.1
SYNE1-223ENST00000476519 UBN2Q6ZU65 1347 aa15.68■□□□□ 0.1
SYNE1-223ENST00000476519 ANP32CO43423 234 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 ANXA1P04083 346 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 HOXA10P31260 410 aaPredicted RBP15.67■□□□□ 0.1
SYNE1-223ENST00000476519 SLC10A5Q5PT55 438 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 HDGFL1Q5TGJ6 251 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 DUSP27Q5VZP5 1158 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 DPY19L2Q6NUT2 758 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 RTKN2Q8IZC4 609 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 XAGE3Q8WTP9 111 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 UTP14AQ9BVJ6 771 aaKnown RBP15.67■□□□□ 0.1
SYNE1-223ENST00000476519 CHMP4AQ9BY43 222 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 MBIPQ9NS73 344 aa15.67■□□□□ 0.1
SYNE1-223ENST00000476519 DBF4Q9UBU7 674 aaPredicted RBP15.67■□□□□ 0.1
SYNE1-223ENST00000476519 HSPA6P17066 643 aa15.66■□□□□ 0.1
SYNE1-223ENST00000476519 AIMP1Q12904 312 aaKnown RBP15.66■□□□□ 0.1
SYNE1-223ENST00000476519 TCIRG1Q13488 830 aa15.66■□□□□ 0.1
SYNE1-223ENST00000476519 CCDC184Q52MB2 194 aa15.66■□□□□ 0.1
SYNE1-223ENST00000476519 NCBP3Q53F19 620 aaKnown RBP15.66■□□□□ 0.1
SYNE1-223ENST00000476519 CCDC93Q567U6 631 aa15.66■□□□□ 0.1
SYNE1-223ENST00000476519 CC2D2BQ6DHV5 1058 aa15.66■□□□□ 0.1
SYNE1-223ENST00000476519 C16orf71Q8IYS4 520 aaPredicted RBP15.66■□□□□ 0.1
SYNE1-223ENST00000476519 RBM46Q8TBY0 533 aaKnown RBP15.66■□□□□ 0.1
SYNE1-223ENST00000476519 RRAGCQ9HB90 399 aa15.66■□□□□ 0.1
SYNE1-223ENST00000476519 HYPKQ9NX55 129 aa15.66■□□□□ 0.1
SYNE1-223ENST00000476519 BCORQ6W2J9 1755 aa15.66■□□□□ 0.1
SYNE1-223ENST00000476519 RNF123Q5XPI4 1314 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms