RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 ZSCAN30Q86W11 494 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 CLASRPQ8N2M8 674 aaKnown RBP5.97□□□□□ -1.45
CCDC39-204ENST00000476379 UBR1Q8IWV7 1749 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 ZKSCAN1P17029 563 aaPredicted RBP5.97□□□□□ -1.45
CCDC39-204ENST00000476379 FKBP4Q02790 459 aaKnown RBP eCLIP5.97□□□□□ -1.45
CCDC39-204ENST00000476379 DNM1Q05193 864 aaKnown RBP5.97□□□□□ -1.45
CCDC39-204ENST00000476379 SMC5Q8IY18 1101 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 QTRT2Q9H974 415 aaKnown RBP5.97□□□□□ -1.45
CCDC39-204ENST00000476379 PLEKHG3A1L390 1219 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 TRIM37O94972 964 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 PDE1AP54750 535 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 ZNF771Q7L3S4 317 aaPredicted RBP5.97□□□□□ -1.45
CCDC39-204ENST00000476379 SRCIN1Q9C0H9 1055 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 ANTXR1Q9H6X2 564 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 TMEM63CQ9P1W3 806 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 CHPF2Q9P2E5 772 aa5.97□□□□□ -1.45
CCDC39-204ENST00000476379 ZNF219Q9P2Y4 722 aaPredicted RBP5.97□□□□□ -1.45
CCDC39-204ENST00000476379 CCDC173Q0VFZ6 552 aa5.96□□□□□ -1.45
CCDC39-204ENST00000476379 RRP12Q5JTH9 1297 aaKnown RBP5.96□□□□□ -1.45
CCDC39-204ENST00000476379 CEP85Q6P2H3 762 aa5.96□□□□□ -1.45
CCDC39-204ENST00000476379 USP48Q86UV5 1035 aa5.96□□□□□ -1.45
CCDC39-204ENST00000476379 CFAP44Q96MT7 982 aa5.96□□□□□ -1.45
CCDC39-204ENST00000476379 GOLGA6L19H0YKK7 550 aa5.96□□□□□ -1.46
CCDC39-204ENST00000476379 PPARDQ03181 441 aa5.96□□□□□ -1.46
CCDC39-204ENST00000476379 AFF2P51816 1311 aa5.96□□□□□ -1.46
CCDC39-204ENST00000476379 USP6P35125 1406 aa5.96□□□□□ -1.46
CCDC39-204ENST00000476379 ATP7BP35670 1465 aa5.96□□□□□ -1.46
CCDC39-204ENST00000476379 ADAMTSL3P82987 1691 aa5.96□□□□□ -1.46
CCDC39-204ENST00000476379 SLFNL1Q499Z3 407 aa5.96□□□□□ -1.46
CCDC39-204ENST00000476379 SPATA31A3Q5VYP0 1347 aa5.96□□□□□ -1.46
CCDC39-204ENST00000476379 DDX46Q7L014 1031 aaKnown RBP5.96□□□□□ -1.46
CCDC39-204ENST00000476379 DEFB132Q7Z7B7 95 aa5.96□□□□□ -1.46
CCDC39-204ENST00000476379 ADCY5O95622 1261 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 NBPF7P0C2Y1 421 aaPredicted RBP5.95□□□□□ -1.46
CCDC39-204ENST00000476379 IL13P35225 146 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 BRPF1P55201 1214 aaPredicted RBP5.95□□□□□ -1.46
CCDC39-204ENST00000476379 HDAC1Q13547 482 aaPredicted RBP5.95□□□□□ -1.46
CCDC39-204ENST00000476379 CCDC30Q5VVM6 783 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 MSL1Q68DK7 614 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.95□□□□□ -1.46
CCDC39-204ENST00000476379 CCDC129Q6ZRS4 1044 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 ASAP1Q9ULH1 1129 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 MYOM2P54296 1465 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 BLMP54132 1417 aaPredicted RBP5.95□□□□□ -1.46
CCDC39-204ENST00000476379 FAM170AA1A519 330 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 RXRAP19793 462 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 GPTP24298 496 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 RAB3GAP1Q15042 981 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 HOMER1Q86YM7 354 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 GPIHBP1Q8IV16 184 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 SDF4Q9BRK5 362 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 RGPD8O14715 1765 aaPredicted RBP5.95□□□□□ -1.46
CCDC39-204ENST00000476379 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.95□□□□□ -1.46
CCDC39-204ENST00000476379 BTBD11A6QL63 1104 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 RAB11FIP3O75154 756 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 CHGBP05060 677 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 ARHGEF25Q86VW2 580 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 GJB2P29033 226 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 PDRG1Q9NUG6 133 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 LRRC7Q96NW7 1537 aa5.95□□□□□ -1.46
CCDC39-204ENST00000476379 RAD21O60216 631 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 SMC2O95347 1197 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 POLR3DP05423 398 aaPredicted RBP5.94□□□□□ -1.46
CCDC39-204ENST00000476379 TATP17735 454 aaPredicted RBP5.94□□□□□ -1.46
CCDC39-204ENST00000476379 TPD52L1Q16890 204 aaPredicted RBP5.94□□□□□ -1.46
CCDC39-204ENST00000476379 OTUD7BQ6GQQ9 843 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 CNTROBQ8N137 903 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 PDILTQ8N807 584 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 GPATCH3Q96I76 525 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 STAC3Q96MF2 364 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 USP26Q9BXU7 913 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 ZBTB3Q9H5J0 574 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 CLCN1P35523 988 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 GPT2Q8TD30 523 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 ME1P48163 572 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 CABP4P57796 275 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 LUZP1Q86V48 1076 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 TTC5Q8N0Z6 440 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 IL17REQ8NFR9 667 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 ZSWIM4Q9H7M6 989 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 IQSEC3Q9UPP2 1182 aaPredicted RBP5.94□□□□□ -1.46
CCDC39-204ENST00000476379 TBC1D2BQ9UPU7 963 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 QRICH2Q9H0J4 1663 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 PPLO60437 1756 aa5.94□□□□□ -1.46
CCDC39-204ENST00000476379 AK9Q5TCS8 1911 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 PSDA5PKW4 1024 aaPredicted RBP5.93□□□□□ -1.46
CCDC39-204ENST00000476379 A1BGP04217 495 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 GNAI3P08754 354 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 CDK11BP21127 795 aaKnown RBP5.93□□□□□ -1.46
CCDC39-204ENST00000476379 SAMD1Q6SPF0 538 aaPredicted RBP5.93□□□□□ -1.46
CCDC39-204ENST00000476379 SASS6Q6UVJ0 657 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 MYD88Q99836 296 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 MAP3K2Q9Y2U5 619 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 MST1RQ04912 1400 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 CPLX1O14810 134 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 CYP27B1O15528 508 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 AK2P54819 239 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 DDB1Q16531 1140 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 KLHL40Q2TBA0 621 aa5.93□□□□□ -1.46
CCDC39-204ENST00000476379 TRMT2AQ8IZ69 625 aaKnown RBP5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms