RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 FAM155AB1AL88 458 aaPredicted RBP6.91□□□□□ -1.3
USP4-209ENST00000475873 CTU1Q7Z7A3 348 aaKnown RBP6.91□□□□□ -1.3
USP4-209ENST00000475873 IFNL2Q8IZJ0 200 aa6.91□□□□□ -1.3
USP4-209ENST00000475873 HHIPL1Q96JK4 782 aa6.91□□□□□ -1.3
USP4-209ENST00000475873 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.91□□□□□ -1.3
USP4-209ENST00000475873 NARFQ9UHQ1 456 aa6.91□□□□□ -1.3
USP4-209ENST00000475873 SPG7Q9UQ90 795 aa6.91□□□□□ -1.3
USP4-209ENST00000475873 COLQQ9Y215 455 aaPredicted RBP6.91□□□□□ -1.3
USP4-209ENST00000475873 FLT4P35916 1363 aa6.91□□□□□ -1.3
USP4-209ENST00000475873 ZPR1O75312 459 aa6.9□□□□□ -1.3
USP4-209ENST00000475873 CELF2O95319 508 aaKnown RBP6.9□□□□□ -1.3
USP4-209ENST00000475873 PRR5LQ6MZQ0 368 aa6.9□□□□□ -1.3
USP4-209ENST00000475873 DLK2Q6UY11 383 aa6.9□□□□□ -1.3
USP4-209ENST00000475873 SLC51AQ86UW1 340 aa6.9□□□□□ -1.3
USP4-209ENST00000475873 DNAJC10Q8IXB1 793 aa6.9□□□□□ -1.3
USP4-209ENST00000475873 GLIS2Q9BZE0 524 aaPredicted RBP6.9□□□□□ -1.3
USP4-209ENST00000475873 RNF186Q9NXI6 227 aa6.9□□□□□ -1.3
USP4-209ENST00000475873 PITPNM2Q9BZ72 1349 aa6.9□□□□□ -1.3
USP4-209ENST00000475873 COL15A1P39059 1388 aa6.9□□□□□ -1.31
USP4-209ENST00000475873 POTEFA5A3E0 1075 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 ERVV-2B6SEH9 535 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 FYB1O15117 783 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 TRPA1O75762 1119 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 SRGNP10124 158 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 NOGQ13253 232 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 TBC1D9BQ66K14 1250 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 BICDL1Q6ZP65 573 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 GPC2Q8N158 579 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 EYA1Q99502 592 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 BRIP1Q9BX63 1249 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 GGNBP2Q9H3C7 697 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 SAGE1Q9NXZ1 904 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 TERF2IPQ9NYB0 399 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 ZBTB1Q9Y2K1 713 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 EMILIN1Q9Y6C2 1016 aa6.89□□□□□ -1.31
USP4-209ENST00000475873 ANKRD26Q9UPS8 1709 aa6.88□□□□□ -1.31
USP4-209ENST00000475873 CYP19A1P11511 503 aaPredicted RBP6.88□□□□□ -1.31
USP4-209ENST00000475873 FKBP4Q02790 459 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP4-209ENST00000475873 SYNE4Q8N205 404 aa6.88□□□□□ -1.31
USP4-209ENST00000475873 SPTBN5Q9NRC6 3674 aaKnown RBP6.88□□□□□ -1.31
USP4-209ENST00000475873 AKAP11Q9UKA4 1901 aa6.88□□□□□ -1.31
USP4-209ENST00000475873 SCN7AQ01118 1682 aa6.87□□□□□ -1.31
USP4-209ENST00000475873 PDE6BP35913 854 aa6.87□□□□□ -1.31
USP4-209ENST00000475873 KIF23Q02241 960 aaPredicted RBP6.87□□□□□ -1.31
USP4-209ENST00000475873 CCDC93Q567U6 631 aa6.87□□□□□ -1.31
USP4-209ENST00000475873 STYK1Q6J9G0 422 aa6.87□□□□□ -1.31
USP4-209ENST00000475873 OTUD5Q96G74 571 aa6.87□□□□□ -1.31
USP4-209ENST00000475873 PAPPA2Q9BXP8 1791 aa6.87□□□□□ -1.31
USP4-209ENST00000475873 ROCK2O75116 1388 aaKnown RBP6.86□□□□□ -1.31
USP4-209ENST00000475873 KIF24Q5T7B8 1368 aa6.86□□□□□ -1.31
USP4-209ENST00000475873 IARSP41252 1262 aaKnown RBP6.86□□□□□ -1.31
USP4-209ENST00000475873 HIRAP54198 1017 aaPredicted RBP6.86□□□□□ -1.31
USP4-209ENST00000475873 USP50Q70EL3 339 aaPredicted RBP6.86□□□□□ -1.31
USP4-209ENST00000475873 CNKSR1Q969H4 720 aa6.86□□□□□ -1.31
USP4-209ENST00000475873 CSRNP1Q96S65 589 aa6.86□□□□□ -1.31
USP4-209ENST00000475873 ZNF408Q9H9D4 720 aa6.86□□□□□ -1.31
USP4-209ENST00000475873 GJA3Q9Y6H8 435 aa6.86□□□□□ -1.31
USP4-209ENST00000475873 HUNKP57058 714 aa6.85□□□□□ -1.31
USP4-209ENST00000475873 CABP4P57796 275 aa6.85□□□□□ -1.31
USP4-209ENST00000475873 SOGA3Q5TF21 947 aa6.85□□□□□ -1.31
USP4-209ENST00000475873 NFATC2IPQ8NCF5 419 aa6.85□□□□□ -1.31
USP4-209ENST00000475873 L3MBTL2Q969R5 705 aa6.85□□□□□ -1.31
USP4-209ENST00000475873 MASTLQ96GX5 879 aa6.85□□□□□ -1.31
USP4-209ENST00000475873 PGAP2Q9UHJ9 254 aa6.85□□□□□ -1.31
USP4-209ENST00000475873 RBBP6Q7Z6E9 1792 aaKnown RBP6.85□□□□□ -1.31
USP4-209ENST00000475873 MNX1P50219 401 aaPredicted RBP6.84□□□□□ -1.31
USP4-209ENST00000475873 AKAP4Q5JQC9 854 aa6.84□□□□□ -1.31
USP4-209ENST00000475873 ZNF296Q8WUU4 475 aaPredicted RBP6.84□□□□□ -1.31
USP4-209ENST00000475873 PDZRN3Q9UPQ7 1066 aa6.84□□□□□ -1.31
USP4-209ENST00000475873 KIF20BQ96Q89 1820 aa6.83□□□□□ -1.32
USP4-209ENST00000475873 SHTN1A0MZ66 631 aa6.83□□□□□ -1.32
USP4-209ENST00000475873 LMOD1P29536 600 aaPredicted RBP6.83□□□□□ -1.32
USP4-209ENST00000475873 EIF5P55010 431 aaKnown RBP6.83□□□□□ -1.32
USP4-209ENST00000475873 PKN2Q16513 984 aaKnown RBP6.83□□□□□ -1.32
USP4-209ENST00000475873 RGMBQ6NW40 437 aa6.83□□□□□ -1.32
USP4-209ENST00000475873 FBXO46Q6PJ61 603 aaPredicted RBP6.83□□□□□ -1.32
USP4-209ENST00000475873 TRPM4Q8TD43 1214 aa6.83□□□□□ -1.32
USP4-209ENST00000475873 COL25A1Q9BXS0 654 aaPredicted RBP6.83□□□□□ -1.32
USP4-209ENST00000475873 GPRC5DQ9NZD1 345 aa6.83□□□□□ -1.32
USP4-209ENST00000475873 MUC3AQ02505 3323 aa6.83□□□□□ -1.32
USP4-209ENST00000475873 POLR2AP24928 1970 aaKnown RBP6.82□□□□□ -1.32
USP4-209ENST00000475873 WASHC2AQ641Q2 1341 aa6.82□□□□□ -1.32
USP4-209ENST00000475873 TTC28Q96AY4 2481 aa6.82□□□□□ -1.32
USP4-209ENST00000475873 KLRG2A4D1S0 409 aaPredicted RBP6.82□□□□□ -1.32
USP4-209ENST00000475873 H0YGN5 161 aa6.82□□□□□ -1.32
USP4-209ENST00000475873 SLC10A3P09131 477 aa6.82□□□□□ -1.32
USP4-209ENST00000475873 EN2P19622 333 aaPredicted RBP6.82□□□□□ -1.32
USP4-209ENST00000475873 CANXP27824 592 aaKnown RBP6.82□□□□□ -1.32
USP4-209ENST00000475873 SLC39A6Q13433 755 aa6.82□□□□□ -1.32
USP4-209ENST00000475873 CNBD1Q8NA66 436 aa6.82□□□□□ -1.32
USP4-209ENST00000475873 R3HDMLQ9H3Y0 253 aa6.82□□□□□ -1.32
USP4-209ENST00000475873 ADARB2Q9NS39 739 aaKnown RBP6.82□□□□□ -1.32
USP4-209ENST00000475873 SOX1O00570 391 aaPredicted RBP6.81□□□□□ -1.32
USP4-209ENST00000475873 TBC1D8O95759 1140 aa6.81□□□□□ -1.32
USP4-209ENST00000475873 EIF6P56537 245 aaKnown RBP6.81□□□□□ -1.32
USP4-209ENST00000475873 EIF4A2Q14240 407 aaKnown RBP6.81□□□□□ -1.32
USP4-209ENST00000475873 ZNF530Q6P9A1 599 aaPredicted RBP6.81□□□□□ -1.32
USP4-209ENST00000475873 USP48Q86UV5 1035 aa6.81□□□□□ -1.32
USP4-209ENST00000475873 RTKN2Q8IZC4 609 aa6.81□□□□□ -1.32
USP4-209ENST00000475873 PUS7Q96PZ0 661 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms