RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 FRAT1Q92837 279 aaPredicted RBP8.44□□□□□ -1.06
ATG4A-207ENST00000474825 WNK3Q9BYP7 1800 aa8.44□□□□□ -1.06
ATG4A-207ENST00000474825 BCL9O00512 1426 aa8.44□□□□□ -1.06
ATG4A-207ENST00000474825 ATRNO75882 1429 aa8.44□□□□□ -1.06
ATG4A-207ENST00000474825 GLI3P10071 1580 aa8.44□□□□□ -1.06
ATG4A-207ENST00000474825 PDAP1Q13442 181 aaKnown RBP8.43□□□□□ -1.06
ATG4A-207ENST00000474825 INTS3Q68E01 1043 aaKnown RBP8.43□□□□□ -1.06
ATG4A-207ENST00000474825 DDX54Q8TDD1 881 aaKnown RBP8.43□□□□□ -1.06
ATG4A-207ENST00000474825 ZNF496Q96IT1 587 aaPredicted RBP8.43□□□□□ -1.06
ATG4A-207ENST00000474825 GJD4Q96KN9 370 aaPredicted RBP8.43□□□□□ -1.06
ATG4A-207ENST00000474825 USP35Q9P2H5 1018 aa8.43□□□□□ -1.06
ATG4A-207ENST00000474825 FBXO3Q9UK99 471 aa8.43□□□□□ -1.06
ATG4A-207ENST00000474825 DDX19BQ9UMR2 479 aa8.43□□□□□ -1.06
ATG4A-207ENST00000474825 COG6Q9Y2V7 657 aa8.43□□□□□ -1.06
ATG4A-207ENST00000474825 IBTKQ9P2D0 1353 aaPredicted RBP8.43□□□□□ -1.06
ATG4A-207ENST00000474825 PAPPAQ13219 1627 aa8.43□□□□□ -1.06
ATG4A-207ENST00000474825 ZBTB7BO15156 539 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-207ENST00000474825 SNRPA1P09661 255 aaKnown RBP8.42□□□□□ -1.06
ATG4A-207ENST00000474825 CANXP27824 592 aaKnown RBP8.42□□□□□ -1.06
ATG4A-207ENST00000474825 SLC39A6Q13433 755 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 PDIA6Q15084 440 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 DDB1Q16531 1140 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 HDGFL1Q5TGJ6 251 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 LRP10Q7Z4F1 713 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 CCDC125Q86Z20 511 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 VSIG10Q8N0Z9 540 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 TMEM57Q8N5G2 664 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 MARCH10Q8NA82 808 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-207ENST00000474825 CLUAP1Q96AJ1 413 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 FMNL2Q96PY5 1086 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 STK31Q9BXU1 1019 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 ZBTB40Q9NUA8 1239 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 DBF4Q9UBU7 674 aaPredicted RBP8.42□□□□□ -1.06
ATG4A-207ENST00000474825 KDM2BQ8NHM5 1336 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 KCPQ6ZWJ8 1503 aa8.42□□□□□ -1.06
ATG4A-207ENST00000474825 VIRMAQ69YN4 1812 aaKnown RBP8.42□□□□□ -1.06
ATG4A-207ENST00000474825 TOGARAM1Q9Y4F4 1720 aa8.41□□□□□ -1.06
ATG4A-207ENST00000474825 THSD7AQ9UPZ6 1657 aa8.41□□□□□ -1.06
ATG4A-207ENST00000474825 ERBB4Q15303 1308 aa8.41□□□□□ -1.06
ATG4A-207ENST00000474825 RIMBP2O15034 1052 aa8.41□□□□□ -1.06
ATG4A-207ENST00000474825 FLIIQ13045 1269 aa8.41□□□□□ -1.06
ATG4A-207ENST00000474825 B4GALNT3Q6L9W6 998 aa8.41□□□□□ -1.06
ATG4A-207ENST00000474825 G2E3Q7L622 706 aa8.41□□□□□ -1.06
ATG4A-207ENST00000474825 FTSJ3Q8IY81 847 aaKnown RBP8.41□□□□□ -1.06
ATG4A-207ENST00000474825 PIGBQ92521 554 aa8.41□□□□□ -1.06
ATG4A-207ENST00000474825 DDX21Q9NR30 783 aaKnown RBP eCLIP8.41□□□□□ -1.06
ATG4A-207ENST00000474825 CCDC9Q9Y3X0 531 aaKnown RBP8.41□□□□□ -1.06
ATG4A-207ENST00000474825 UBR2Q8IWV8 1755 aa8.4□□□□□ -1.06
ATG4A-207ENST00000474825 TCERG1O14776 1098 aaKnown RBP8.4□□□□□ -1.06
ATG4A-207ENST00000474825 PTGER2P43116 358 aa8.4□□□□□ -1.06
ATG4A-207ENST00000474825 TTC5Q8N0Z6 440 aa8.4□□□□□ -1.06
ATG4A-207ENST00000474825 CCDC136Q96JN2 1154 aa8.4□□□□□ -1.06
ATG4A-207ENST00000474825 CHMP4BQ9H444 224 aaKnown RBP8.4□□□□□ -1.06
ATG4A-207ENST00000474825 ATG3Q9NT62 314 aa8.4□□□□□ -1.06
ATG4A-207ENST00000474825 HYPKQ9NX55 129 aa8.4□□□□□ -1.06
ATG4A-207ENST00000474825 TMOD3Q9NYL9 352 aa8.4□□□□□ -1.06
ATG4A-207ENST00000474825 CACNA1FO60840 1977 aa8.4□□□□□ -1.06
ATG4A-207ENST00000474825 PXDNLA1KZ92 1463 aa8.39□□□□□ -1.07
ATG4A-207ENST00000474825 PRAMEF22A3QJZ6 481 aa8.39□□□□□ -1.07
ATG4A-207ENST00000474825 CCT4P50991 539 aaKnown RBP8.39□□□□□ -1.07
ATG4A-207ENST00000474825 FAM98CQ17RN3 349 aaKnown RBP8.39□□□□□ -1.07
ATG4A-207ENST00000474825 VARS2Q5ST30 1063 aaKnown RBP8.39□□□□□ -1.07
ATG4A-207ENST00000474825 TEX13AQ9BXU3 409 aaPredicted RBP8.39□□□□□ -1.07
ATG4A-207ENST00000474825 CHPF2Q9P2E5 772 aa8.39□□□□□ -1.07
ATG4A-207ENST00000474825 PCDHB15Q9Y5E8 787 aa8.39□□□□□ -1.07
ATG4A-207ENST00000474825 ATP10DQ9P241 1426 aa8.38□□□□□ -1.07
ATG4A-207ENST00000474825 EIF2S2P20042 333 aaKnown RBP8.38□□□□□ -1.07
ATG4A-207ENST00000474825 HDAC1Q13547 482 aaPredicted RBP8.38□□□□□ -1.07
ATG4A-207ENST00000474825 CENPQQ7L2Z9 268 aaPredicted RBP8.38□□□□□ -1.07
ATG4A-207ENST00000474825 ZNF687Q8N1G0 1237 aa8.38□□□□□ -1.07
ATG4A-207ENST00000474825 PHAXQ9H814 394 aaKnown RBP8.38□□□□□ -1.07
ATG4A-207ENST00000474825 ZSWIM6Q9HCJ5 1215 aa8.38□□□□□ -1.07
ATG4A-207ENST00000474825 ASAP1Q9ULH1 1129 aa8.38□□□□□ -1.07
ATG4A-207ENST00000474825 USP16Q9Y5T5 823 aa8.38□□□□□ -1.07
ATG4A-207ENST00000474825 A0A0G2JS52 829 aa8.37□□□□□ -1.07
ATG4A-207ENST00000474825 PRIM1P49642 420 aaKnown RBP8.37□□□□□ -1.07
ATG4A-207ENST00000474825 MYT1Q01538 1121 aa8.37□□□□□ -1.07
ATG4A-207ENST00000474825 SF3B2Q13435 895 aaKnown RBP8.37□□□□□ -1.07
ATG4A-207ENST00000474825 PROSER3Q2NL68 480 aa8.37□□□□□ -1.07
ATG4A-207ENST00000474825 ITPRIPQ8IWB1 547 aa8.37□□□□□ -1.07
ATG4A-207ENST00000474825 SLC4A9Q96Q91 983 aa8.37□□□□□ -1.07
ATG4A-207ENST00000474825 ADCY9O60503 1353 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 CICQ96RK0 1608 aaPredicted RBP8.36□□□□□ -1.07
ATG4A-207ENST00000474825 NBPF26B4DH59 902 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 IGHDP01880 384 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 FKBP5Q13451 457 aaPredicted RBP8.36□□□□□ -1.07
ATG4A-207ENST00000474825 BEND3Q5T5X7 828 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 NBPF14Q5TI25 921 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 NBPF10Q6P3W6 841 aaKnown RBP8.36□□□□□ -1.07
ATG4A-207ENST00000474825 KSR2Q6VAB6 950 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 SEPT12Q8IYM1 358 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 KLHL34Q8N239 644 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 NBPF15Q8N660 670 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 NECTIN2Q92692 538 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 C5P01031 1676 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 ITGB4P16144 1822 aa8.36□□□□□ -1.07
ATG4A-207ENST00000474825 PI4KAP2A4QPH2 592 aa8.35□□□□□ -1.07
ATG4A-207ENST00000474825 F6X3S4 739 aa8.35□□□□□ -1.07
ATG4A-207ENST00000474825 CYP19A1P11511 503 aaPredicted RBP8.35□□□□□ -1.07
ATG4A-207ENST00000474825 PI4KAP1Q8N8J0 262 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms