RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 A0A087WUV0 522 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-210ENST00000473258 DYTNA2CJ06 578 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 PSMD7P51665 324 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 ALS2CR12Q96Q35 445 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 PPP6R1Q9UPN7 881 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 RSF1Q96T23 1441 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-210ENST00000473258 XBP1P17861 261 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 SCAND2PQ9GZW5 306 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-210ENST00000473258 DDX19AQ9NUU7 478 aaKnown RBP10.32□□□□□ -0.76
COL6A3-210ENST00000473258 GFAPP14136 432 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 TMED1Q13445 227 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 HSP90AA5PQ58FG0 334 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 NAA16Q6N069 864 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-210ENST00000473258 STAG1Q8WVM7 1258 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 EVCP57679 992 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 TRIM68Q6AZZ1 485 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 INTS8Q75QN2 995 aaKnown RBP10.32□□□□□ -0.76
COL6A3-210ENST00000473258 XAB2Q9HCS7 855 aaKnown RBP10.32□□□□□ -0.76
COL6A3-210ENST00000473258 SRGAP3O43295 1099 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 ZWINTO95229 277 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 TRIM21P19474 475 aaKnown RBP10.32□□□□□ -0.76
COL6A3-210ENST00000473258 GTF2E1P29083 439 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-210ENST00000473258 YY1AP1Q9H869 796 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 IKBKGQ9Y6K9 419 aa10.32□□□□□ -0.76
COL6A3-210ENST00000473258 RPSAP08865 295 aaKnown RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 IFIT2P09913 472 aaKnown RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 POLE2P56282 527 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 PIBF1Q8WXW3 757 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 GEMIN8Q9NWZ8 242 aaKnown RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 DHX16O60231 1041 aaKnown RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 GIGYF1O75420 1035 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 VIMP08670 466 aaKnown RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 PPP2R3AQ06190 1150 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 RASEFQ8IZ41 740 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 JADE2Q9NQC1 790 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 PDRG1Q9NUG6 133 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 LIMCH1Q9UPQ0 1083 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 CIB2O75838 187 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 YEATS4O95619 227 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 MATR3P43243 847 aaKnown RBP eCLIP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 SART3Q15020 963 aaKnown RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 MUM1Q2TAK8 710 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 CXorf56Q9H5V9 222 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 TNIKQ9UKE5 1360 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 A0A1W2PRG0 241 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 GOLGA6CA6NDK9 693 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 ZNF500O60304 480 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 GOLGA6DP0CG33 693 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 ZFXP17010 805 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 ALDH3A1P30838 453 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 CACNA2D4Q7Z3S7 1137 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 RALYLQ86SE5 291 aaKnown RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 KIF2CQ99661 725 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 TANGO6Q9C0B7 1094 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 GOLGA6AQ9NYA3 693 aa10.31□□□□□ -0.76
COL6A3-210ENST00000473258 RRP7AQ9Y3A4 280 aaKnown RBP10.31□□□□□ -0.76
COL6A3-210ENST00000473258 PCYT1AP49585 367 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 ANKRD1Q15327 319 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 TTC19Q6DKK2 380 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-210ENST00000473258 GSDMBQ8TAX9 411 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 PRPF31Q8WWY3 499 aaKnown RBP10.3□□□□□ -0.76
COL6A3-210ENST00000473258 HAUS1Q96CS2 278 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 RBM27Q9P2N5 1060 aaKnown RBP10.3□□□□□ -0.76
COL6A3-210ENST00000473258 SMIM23A6NLE4 172 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 DYNC1I2Q13409 638 aaKnown RBP10.3□□□□□ -0.76
COL6A3-210ENST00000473258 PDE3AQ14432 1141 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 APAF1O14727 1248 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 ELF2Q15723 593 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 HOMER2Q9NSB8 354 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 CETN2P41208 172 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 IRX5P78411 483 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-210ENST00000473258 MFSD4BQ5TF39 518 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 CKAP2LQ8IYA6 745 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 CYP46A1Q9Y6A2 500 aa10.3□□□□□ -0.76
COL6A3-210ENST00000473258 MGEA5O60502 916 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 CFAP58Q5T655 872 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 LCA5Q86VQ0 697 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 HOOK3Q86VS8 718 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 KIAA1524Q8TCG1 905 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 LRRC45Q96CN5 670 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 ZSCAN31Q96LW9 406 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-210ENST00000473258 ATP2B1P20020 1258 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 SKOR1P84550 965 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 CCDC170Q8IYT3 715 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 ACRBPQ8NEB7 543 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 SELENOSQ9BQE4 189 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.29□□□□□ -0.76
COL6A3-210ENST00000473258 AKNAQ7Z591 1439 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 MYO1CO00159 1063 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 CCDC152Q4G0S7 254 aa10.29□□□□□ -0.76
COL6A3-210ENST00000473258 IQCGQ9H095 443 aaKnown RBP10.29□□□□□ -0.76
COL6A3-210ENST00000473258 ERICH2A1L162 156 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 STX1AQ16623 288 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 CCDC30Q5VVM6 783 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 SYT10Q6XYQ8 523 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 GOLGA3Q08378 1498 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 BICDL2A1A5D9 508 aa10.28□□□□□ -0.76
COL6A3-210ENST00000473258 TPD52P55327 224 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-210ENST00000473258 PHLDB3Q6NSJ2 640 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms